HEADER LYASE 11-OCT-24 9JXU TITLE CRYSTAL STRUCTURE OF CYSTEINE SYNTHASE A FROM LIMOSILACTOBACILLUS TITLE 2 REUTERI LR1 IN ITS APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.47; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIMOSILACTOBACILLUS REUTERI; SOURCE 3 ORGANISM_COMMON: LACTOBACILLUS REUTERI; SOURCE 4 ORGANISM_TAXID: 1598; SOURCE 5 GENE: CYSK, B1A73_08060, B5F04_07160, B5G22_06315, GTO86_10515; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CYSTEINE SYNTHASE, LRECYSK, CYSK, APO FORM, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR I.O.MATYUTA,E.K.LES,M.E.MINYAEV,A.A.POMETUN,V.I.TISHKOV,V.O.POPOV, AUTHOR 2 K.M.BOYKO REVDAT 2 25-DEC-24 9JXU 1 AUTHOR REVDAT 1 13-NOV-24 9JXU 0 JRNL AUTH E.K.SHAPOSHNIKOV,E.K.LES,N.Y.CHIKUROVA,I.O.MATYUTA, JRNL AUTH 2 K.M.BOYKO,M.E.MINYAEV,V.O.POPOV,A.V.GORBOVSKAIA, JRNL AUTH 3 A.A.SHIROKOVA,A.A.LOGINOVA,S.S.SAVIN,S.Y.KLEYMENOV, JRNL AUTH 4 A.V.CHERNOBROVKINA,E.V.POMETUN,V.I.TISHKOV,A.A.POMETUN JRNL TITL STRUCTURE-FUNCTIONAL EXAMINATION OF NOVEL CYSTEINE SYNTHASE JRNL TITL 2 A (CYSK) FROM LIMOSILACTOBACILLUS REUTERI LR1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0430 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 30892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1583 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : -0.64000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.254 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.205 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.527 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4086 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5538 ; 2.937 ; 1.803 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 557 ; 8.112 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 8 ; 6.951 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;17.812 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 659 ; 0.246 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3000 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2222 ; 5.315 ; 3.244 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2769 ; 7.570 ; 5.827 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1864 ; 6.628 ; 3.502 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5873 ;11.366 ;37.630 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9JXU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1300052270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32499 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.27300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 1.33100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5XOQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.15 M LITHIUM SULFATE MONOHYDRATE, REMARK 280 0.1 M CITRIC ACID PH 3.5, 18% PEG6000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 50.64600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 ASN A 153 REMARK 465 PRO A 154 REMARK 465 ALA A 155 REMARK 465 ASN A 156 REMARK 465 PRO A 157 REMARK 465 ALA A 158 REMARK 465 ILE A 159 REMARK 465 HIS A 160 REMARK 465 SER A 214 REMARK 465 PRO A 215 REMARK 465 VAL A 216 REMARK 465 LEU A 217 REMARK 465 LYS A 218 REMARK 465 GLU A 219 REMARK 465 GLY A 220 REMARK 465 LYS A 221 REMARK 465 GLY A 222 REMARK 465 GLY A 223 REMARK 465 LYS A 224 REMARK 465 HIS A 225 REMARK 465 LYS A 226 REMARK 465 ILE A 227 REMARK 465 GLN A 228 REMARK 465 GLY A 229 REMARK 465 ILE A 230 REMARK 465 SER A 231 REMARK 465 ALA A 232 REMARK 465 GLY A 233 REMARK 465 PHE A 234 REMARK 465 ILE A 235 REMARK 465 PRO A 236 REMARK 465 LYS A 237 REMARK 465 VAL A 238 REMARK 465 LEU A 239 REMARK 465 ASP A 240 REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 ASN B 156 REMARK 465 PRO B 157 REMARK 465 ALA B 158 REMARK 465 ILE B 159 REMARK 465 GLU B 213 REMARK 465 SER B 214 REMARK 465 PRO B 215 REMARK 465 VAL B 216 REMARK 465 LEU B 217 REMARK 465 LYS B 218 REMARK 465 GLU B 219 REMARK 465 GLY B 220 REMARK 465 LYS B 221 REMARK 465 GLY B 222 REMARK 465 GLY B 223 REMARK 465 LYS B 224 REMARK 465 HIS B 225 REMARK 465 LYS B 226 REMARK 465 ILE B 227 REMARK 465 GLN B 228 REMARK 465 GLY B 229 REMARK 465 ILE B 230 REMARK 465 SER B 231 REMARK 465 ALA B 232 REMARK 465 GLY B 233 REMARK 465 PHE B 234 REMARK 465 ILE B 235 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 5 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 LYS A 51 CE NZ REMARK 470 LYS A 64 CE NZ REMARK 470 ASN A 81 CG OD1 ND2 REMARK 470 THR A 104 CG2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 130 CE NZ REMARK 470 LYS A 141 CD CE NZ REMARK 470 ASP A 152 CG OD1 OD2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LYS A 199 NZ REMARK 470 GLU A 213 CG CD OE1 OE2 REMARK 470 ASP A 242 CG OD1 OD2 REMARK 470 ILE A 247 CD1 REMARK 470 ILE A 250 CD1 REMARK 470 LYS A 251 CE NZ REMARK 470 LYS A 287 CE NZ REMARK 470 LYS A 290 CE NZ REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 306 CG CD1 CD2 REMARK 470 SER A 307 OG REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 ASN A 312 CG OD1 ND2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 LYS B 51 CE NZ REMARK 470 LYS B 64 CG CD CE NZ REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 GLN B 69 CG CD OE1 NE2 REMARK 470 ASN B 81 CG OD1 ND2 REMARK 470 ARG B 109 NE CZ NH1 NH2 REMARK 470 ILE B 121 CD1 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 GLU B 137 OE1 OE2 REMARK 470 LYS B 141 CG CD CE NZ REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 MET B 149 CG SD CE REMARK 470 GLN B 150 CG CD OE1 NE2 REMARK 470 ASP B 152 CG OD1 OD2 REMARK 470 ASN B 153 CG OD1 ND2 REMARK 470 HIS B 160 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 LYS B 199 CE NZ REMARK 470 LYS B 251 CE NZ REMARK 470 LYS B 287 CE NZ REMARK 470 LYS B 290 CE NZ REMARK 470 ARG B 304 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 309 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 PHE A 44 CB - CA - C ANGL. DEV. = -12.9 DEGREES REMARK 500 ASN A 45 CB - CA - C ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG A 53 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 53 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 THR A 78 OG1 - CB - CG2 ANGL. DEV. = 14.7 DEGREES REMARK 500 LEU A 86 CB - CG - CD1 ANGL. DEV. = 12.6 DEGREES REMARK 500 LYS A 93 CD - CE - NZ ANGL. DEV. = -15.3 DEGREES REMARK 500 MET A 101 CG - SD - CE ANGL. DEV. = -17.5 DEGREES REMARK 500 MET A 113 CG - SD - CE ANGL. DEV. = 13.6 DEGREES REMARK 500 LEU A 120 CB - CG - CD1 ANGL. DEV. = 14.3 DEGREES REMARK 500 MET A 147 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 LYS A 199 CB - CG - CD ANGL. DEV. = 15.6 DEGREES REMARK 500 LEU A 288 CB - CG - CD1 ANGL. DEV. = -10.4 DEGREES REMARK 500 LYS A 292 CB - CG - CD ANGL. DEV. = 16.1 DEGREES REMARK 500 ASN A 312 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 LEU B 17 CB - CG - CD2 ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG B 28 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ASN B 45 CB - CA - C ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG B 53 CD - NE - CZ ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG B 53 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 MET B 58 CG - SD - CE ANGL. DEV. = 12.6 DEGREES REMARK 500 LYS B 93 CB - CG - CD ANGL. DEV. = -17.1 DEGREES REMARK 500 LEU B 120 CB - CG - CD1 ANGL. DEV. = -15.8 DEGREES REMARK 500 LEU B 169 CB - CG - CD1 ANGL. DEV. = 10.8 DEGREES REMARK 500 LYS B 198 CB - CG - CD ANGL. DEV. = 18.6 DEGREES REMARK 500 GLU B 210 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 LYS B 237 N - CA - CB ANGL. DEV. = 12.7 DEGREES REMARK 500 ASN B 312 CB - CA - C ANGL. DEV. = 12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 45 131.32 -173.61 REMARK 500 GLU A 103 -8.38 -55.87 REMARK 500 GLU A 103 -18.46 -45.85 REMARK 500 MET A 149 64.08 70.02 REMARK 500 ASN A 312 -115.60 -85.19 REMARK 500 GLU B 103 -19.85 -49.88 REMARK 500 SER B 106 54.45 70.09 REMARK 500 GLU B 108 -39.93 83.57 REMARK 500 LYS B 237 91.82 106.14 REMARK 500 ASN B 312 -115.06 -85.43 REMARK 500 REMARK 500 REMARK: NULL DBREF1 9JXU A 8 313 UNP A0A1S9AE02_LIMRT DBREF2 9JXU A A0A1S9AE02 2 307 DBREF1 9JXU B 8 313 UNP A0A1S9AE02_LIMRT DBREF2 9JXU B A0A1S9AE02 2 307 SEQADV 9JXU MET A 1 UNP A0A1S9AE0 INITIATING METHIONINE SEQADV 9JXU HIS A 2 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS A 3 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS A 4 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS A 5 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS A 6 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS A 7 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU MET B 1 UNP A0A1S9AE0 INITIATING METHIONINE SEQADV 9JXU HIS B 2 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS B 3 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS B 4 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS B 5 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS B 6 UNP A0A1S9AE0 EXPRESSION TAG SEQADV 9JXU HIS B 7 UNP A0A1S9AE0 EXPRESSION TAG SEQRES 1 A 313 MET HIS HIS HIS HIS HIS HIS THR LYS ILE THR ASN SER SEQRES 2 A 313 ILE VAL ASN LEU ILE GLY ASN THR PRO ILE VAL LYS LEU SEQRES 3 A 313 ASN ARG VAL VAL PRO GLU ASP ALA ALA ASP VAL TYR VAL SEQRES 4 A 313 LYS LEU GLU PHE PHE ASN PRO GLY GLY SER ILE LYS ASP SEQRES 5 A 313 ARG ILE ALA LEU ALA MET ILE GLU GLU ALA GLU LYS ALA SEQRES 6 A 313 GLY LYS LEU GLN ALA GLY GLY THR ILE VAL GLU PRO THR SEQRES 7 A 313 SER GLY ASN THR GLY VAL GLY LEU ALA MET VAL ALA ALA SEQRES 8 A 313 ALA LYS GLY TYR HIS LEU VAL ILE THR MET PRO GLU THR SEQRES 9 A 313 MET SER VAL GLU ARG ARG LYS LEU MET GLN GLY TYR GLY SEQRES 10 A 313 ALA GLU LEU ILE LEU THR PRO GLY ALA ASP GLY MET LYS SEQRES 11 A 313 GLY ALA ILE ALA LYS ALA GLU GLU LEU VAL LYS GLU LYS SEQRES 12 A 313 GLY TYR PHE MET PRO MET GLN PHE ASP ASN PRO ALA ASN SEQRES 13 A 313 PRO ALA ILE HIS GLU GLU THR THR GLY LYS GLU ILE LEU SEQRES 14 A 313 GLU ALA PHE GLY ASP ASP ILE PRO ASP ALA PHE VAL ALA SEQRES 15 A 313 GLY VAL GLY THR GLY GLY THR LEU THR GLY VAL GLY HIS SEQRES 16 A 313 ALA LEU LYS LYS ALA ASN PRO ASN VAL GLN ILE TYR ALA SEQRES 17 A 313 LEU GLU PRO ALA GLU SER PRO VAL LEU LYS GLU GLY LYS SEQRES 18 A 313 GLY GLY LYS HIS LYS ILE GLN GLY ILE SER ALA GLY PHE SEQRES 19 A 313 ILE PRO LYS VAL LEU ASP THR ASP VAL TYR ASN GLY ILE SEQRES 20 A 313 LEU GLU ILE LYS SER ASP ASP ALA ILE THR MET ALA ARG SEQRES 21 A 313 GLU VAL GLY HIS GLN GLU GLY ILE LEU VAL GLY ILE SER SEQRES 22 A 313 ALA GLY ALA ASN ILE LYS GLY ALA ILE GLU VAL ALA LYS SEQRES 23 A 313 LYS LEU GLY LYS GLY LYS GLN VAL ILE THR VAL ALA PRO SEQRES 24 A 313 ASP GLY GLY ASP ARG TYR LEU SER THR GLU LEU PHE ASN SEQRES 25 A 313 TYR SEQRES 1 B 313 MET HIS HIS HIS HIS HIS HIS THR LYS ILE THR ASN SER SEQRES 2 B 313 ILE VAL ASN LEU ILE GLY ASN THR PRO ILE VAL LYS LEU SEQRES 3 B 313 ASN ARG VAL VAL PRO GLU ASP ALA ALA ASP VAL TYR VAL SEQRES 4 B 313 LYS LEU GLU PHE PHE ASN PRO GLY GLY SER ILE LYS ASP SEQRES 5 B 313 ARG ILE ALA LEU ALA MET ILE GLU GLU ALA GLU LYS ALA SEQRES 6 B 313 GLY LYS LEU GLN ALA GLY GLY THR ILE VAL GLU PRO THR SEQRES 7 B 313 SER GLY ASN THR GLY VAL GLY LEU ALA MET VAL ALA ALA SEQRES 8 B 313 ALA LYS GLY TYR HIS LEU VAL ILE THR MET PRO GLU THR SEQRES 9 B 313 MET SER VAL GLU ARG ARG LYS LEU MET GLN GLY TYR GLY SEQRES 10 B 313 ALA GLU LEU ILE LEU THR PRO GLY ALA ASP GLY MET LYS SEQRES 11 B 313 GLY ALA ILE ALA LYS ALA GLU GLU LEU VAL LYS GLU LYS SEQRES 12 B 313 GLY TYR PHE MET PRO MET GLN PHE ASP ASN PRO ALA ASN SEQRES 13 B 313 PRO ALA ILE HIS GLU GLU THR THR GLY LYS GLU ILE LEU SEQRES 14 B 313 GLU ALA PHE GLY ASP ASP ILE PRO ASP ALA PHE VAL ALA SEQRES 15 B 313 GLY VAL GLY THR GLY GLY THR LEU THR GLY VAL GLY HIS SEQRES 16 B 313 ALA LEU LYS LYS ALA ASN PRO ASN VAL GLN ILE TYR ALA SEQRES 17 B 313 LEU GLU PRO ALA GLU SER PRO VAL LEU LYS GLU GLY LYS SEQRES 18 B 313 GLY GLY LYS HIS LYS ILE GLN GLY ILE SER ALA GLY PHE SEQRES 19 B 313 ILE PRO LYS VAL LEU ASP THR ASP VAL TYR ASN GLY ILE SEQRES 20 B 313 LEU GLU ILE LYS SER ASP ASP ALA ILE THR MET ALA ARG SEQRES 21 B 313 GLU VAL GLY HIS GLN GLU GLY ILE LEU VAL GLY ILE SER SEQRES 22 B 313 ALA GLY ALA ASN ILE LYS GLY ALA ILE GLU VAL ALA LYS SEQRES 23 B 313 LYS LEU GLY LYS GLY LYS GLN VAL ILE THR VAL ALA PRO SEQRES 24 B 313 ASP GLY GLY ASP ARG TYR LEU SER THR GLU LEU PHE ASN SEQRES 25 B 313 TYR HET PGE A 401 10 HET EDO A 402 4 HET PEG A 403 7 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET SO4 A 408 5 HET SO4 A 409 5 HET SO4 A 410 5 HET EDO B 401 4 HET SO4 B 402 5 HETNAM PGE TRIETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PGE C6 H14 O4 FORMUL 4 EDO 6(C2 H6 O2) FORMUL 5 PEG C4 H10 O3 FORMUL 10 SO4 4(O4 S 2-) FORMUL 15 HOH *86(H2 O) HELIX 1 AA1 SER A 13 ILE A 18 5 6 HELIX 2 AA2 GLU A 42 ASN A 45 5 4 HELIX 3 AA3 SER A 49 ALA A 65 1 17 HELIX 4 AA4 GLY A 83 GLY A 94 1 12 HELIX 5 AA5 SER A 106 TYR A 116 1 11 HELIX 6 AA6 PRO A 124 ALA A 126 5 3 HELIX 7 AA7 ASP A 127 GLY A 144 1 18 HELIX 8 AA8 GLU A 162 PHE A 172 1 11 HELIX 9 AA9 GLY A 187 ASN A 201 1 15 HELIX 10 AB1 LYS A 251 GLY A 267 1 17 HELIX 11 AB2 GLY A 271 GLY A 289 1 19 HELIX 12 AB3 GLY A 301 LEU A 306 5 6 HELIX 13 AB4 SER B 13 ILE B 18 5 6 HELIX 14 AB5 GLU B 42 ASN B 45 5 4 HELIX 15 AB6 SER B 49 ALA B 65 1 17 HELIX 16 AB7 SER B 79 GLY B 94 1 16 HELIX 17 AB8 GLU B 108 TYR B 116 1 9 HELIX 18 AB9 PRO B 124 ASP B 127 5 4 HELIX 19 AC1 GLY B 128 GLY B 144 1 17 HELIX 20 AC2 GLU B 161 PHE B 172 1 12 HELIX 21 AC3 GLY B 187 ASN B 201 1 15 HELIX 22 AC4 LYS B 251 GLY B 267 1 17 HELIX 23 AC5 GLY B 271 GLY B 289 1 19 HELIX 24 AC6 GLY B 301 LEU B 306 5 6 SHEET 1 AA1 7 ILE A 10 THR A 11 0 SHEET 2 AA1 7 ILE B 23 LYS B 25 1 O ILE B 23 N THR A 11 SHEET 3 AA1 7 ASP B 36 LYS B 40 -1 O VAL B 39 N VAL B 24 SHEET 4 AA1 7 GLN B 293 VAL B 297 1 O VAL B 294 N ASP B 36 SHEET 5 AA1 7 ALA B 179 GLY B 183 1 N ALA B 179 O ILE B 295 SHEET 6 AA1 7 GLN B 205 PRO B 211 1 O GLN B 205 N PHE B 180 SHEET 7 AA1 7 GLY B 246 ILE B 250 1 O LEU B 248 N ALA B 208 SHEET 1 AA2 7 GLY A 246 ILE A 250 0 SHEET 2 AA2 7 GLN A 205 PRO A 211 1 N ALA A 208 O LEU A 248 SHEET 3 AA2 7 ALA A 179 GLY A 183 1 N ALA A 182 O LEU A 209 SHEET 4 AA2 7 GLN A 293 VAL A 297 1 O ILE A 295 N ALA A 179 SHEET 5 AA2 7 ASP A 36 LYS A 40 1 N ASP A 36 O VAL A 294 SHEET 6 AA2 7 ILE A 23 LYS A 25 -1 N VAL A 24 O VAL A 39 SHEET 7 AA2 7 ILE B 10 THR B 11 1 O THR B 11 N ILE A 23 SHEET 1 AA3 3 THR A 73 PRO A 77 0 SHEET 2 AA3 3 HIS A 96 PRO A 102 1 O VAL A 98 N ILE A 74 SHEET 3 AA3 3 GLU A 119 THR A 123 1 O GLU A 119 N LEU A 97 SHEET 1 AA4 3 THR B 73 PRO B 77 0 SHEET 2 AA4 3 HIS B 96 PRO B 102 1 O VAL B 98 N ILE B 74 SHEET 3 AA4 3 GLU B 119 THR B 123 1 O GLU B 119 N LEU B 97 CRYST1 53.642 101.292 63.530 90.00 107.33 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018642 0.000000 0.005817 0.00000 SCALE2 0.000000 0.009872 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016489 0.00000