HEADER LIPID BINDING PROTEIN 14-OCT-24 9JZP TITLE CRYSTAL STRUCTURE OF NIR2 C-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMBRANE-ASSOCIATED PHOSPHATIDYLINOSITOL TRANSFER PROTEIN COMPND 3 1; COMPND 4 CHAIN: A, B, C; COMPND 5 SYNONYM: DROSOPHILA RETINAL DEGENERATION B HOMOLOG 1,RDGB1,MPT-1, COMPND 6 PHOSPHATIDYLINOSITOL TRANSFER PROTEIN,MEMBRANE-ASSOCIATED 1,PITPNM 1, COMPND 7 PYK2 N-TERMINAL DOMAIN-INTERACTING RECEPTOR 2,NIR-2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PITPNM1, DRES9, MPT1, NIR2, PITPNM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PLC SIGNALING, PI CYCLE, MEMBRANE CONTACT SITE, LIPID TRANSFER, LIPID KEYWDS 2 BINDING, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.KIM,C.LEE REVDAT 2 05-NOV-25 9JZP 1 JRNL REVDAT 1 15-OCT-25 9JZP 0 JRNL AUTH D.KIM,S.LEE,Y.JUN,C.LEE JRNL TITL NIR2 CRYSTAL STRUCTURES REVEAL A PHOSPHATIDIC ACID-SENSING JRNL TITL 2 MECHANISM AT ER-PM CONTACT SITES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 49122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 41129229 JRNL DOI 10.1073/PNAS.2516849122 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 34281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.4070 - 5.3140 0.99 2909 152 0.1830 0.2430 REMARK 3 2 5.3140 - 4.2186 0.99 2800 150 0.1521 0.2015 REMARK 3 3 4.2186 - 3.6856 0.97 2713 140 0.1697 0.1876 REMARK 3 4 3.6856 - 3.3487 0.99 2757 153 0.1823 0.2414 REMARK 3 5 3.3487 - 3.1087 1.00 2744 131 0.2172 0.3122 REMARK 3 6 3.1087 - 2.9254 1.00 2755 149 0.2289 0.3127 REMARK 3 7 2.9254 - 2.7789 0.98 2677 150 0.2306 0.2849 REMARK 3 8 2.7789 - 2.6580 0.98 2672 126 0.2276 0.2775 REMARK 3 9 2.6580 - 2.5557 1.00 2730 154 0.2217 0.3235 REMARK 3 10 2.5557 - 2.4675 1.00 2715 134 0.2216 0.2628 REMARK 3 11 2.4675 - 2.3903 1.00 2725 143 0.2168 0.2742 REMARK 3 12 2.3903 - 2.3220 0.88 2371 131 0.1998 0.2480 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5711 REMARK 3 ANGLE : 1.116 7768 REMARK 3 CHIRALITY : 0.046 886 REMARK 3 PLANARITY : 0.006 998 REMARK 3 DIHEDRAL : 12.247 2032 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 915:1015 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.251 15.563 7.947 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.2997 REMARK 3 T33: 0.2675 T12: -0.0256 REMARK 3 T13: 0.0031 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.9671 L22: 0.9567 REMARK 3 L33: 1.3897 L12: -0.5801 REMARK 3 L13: -0.5658 L23: 0.1550 REMARK 3 S TENSOR REMARK 3 S11: 0.1338 S12: -0.1010 S13: 0.0336 REMARK 3 S21: -0.1336 S22: -0.0855 S23: -0.0867 REMARK 3 S31: -0.0334 S32: 0.1117 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 1016:1175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.802 15.557 -17.017 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.1693 REMARK 3 T33: 0.2393 T12: -0.0152 REMARK 3 T13: 0.0038 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.4045 L22: 1.9129 REMARK 3 L33: 2.4681 L12: -0.5564 REMARK 3 L13: 0.3459 L23: -0.0889 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: -0.0043 S13: 0.0800 REMARK 3 S21: -0.0731 S22: 0.0059 S23: 0.0951 REMARK 3 S31: -0.0235 S32: -0.0078 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN B AND RESID 914:1015 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.366 38.704 -28.379 REMARK 3 T TENSOR REMARK 3 T11: 0.2635 T22: 0.3231 REMARK 3 T33: 0.3037 T12: 0.0085 REMARK 3 T13: 0.0024 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 0.5106 L22: 0.7343 REMARK 3 L33: 1.2692 L12: 0.7619 REMARK 3 L13: 0.6846 L23: 0.6972 REMARK 3 S TENSOR REMARK 3 S11: -0.0828 S12: 0.1127 S13: 0.0753 REMARK 3 S21: -0.1577 S22: 0.0518 S23: 0.0593 REMARK 3 S31: -0.0591 S32: 0.1768 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 1016:1171 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.328 41.605 -33.527 REMARK 3 T TENSOR REMARK 3 T11: 0.2693 T22: 0.2568 REMARK 3 T33: 0.3191 T12: -0.0094 REMARK 3 T13: -0.0048 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.7121 L22: 2.3738 REMARK 3 L33: 1.4060 L12: -0.5935 REMARK 3 L13: 0.6645 L23: -0.3920 REMARK 3 S TENSOR REMARK 3 S11: 0.0281 S12: 0.0295 S13: 0.0054 REMARK 3 S21: 0.0350 S22: 0.0002 S23: 0.1798 REMARK 3 S31: -0.0230 S32: -0.0030 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN C AND RESID 913:1015 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.436 61.511 -1.375 REMARK 3 T TENSOR REMARK 3 T11: 0.5721 T22: 0.6141 REMARK 3 T33: 0.3782 T12: -0.1054 REMARK 3 T13: 0.0078 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 0.9928 L22: 0.5019 REMARK 3 L33: 0.7338 L12: -0.0130 REMARK 3 L13: 0.2029 L23: 0.6304 REMARK 3 S TENSOR REMARK 3 S11: 0.1519 S12: 0.0611 S13: -0.0001 REMARK 3 S21: 0.1545 S22: -0.0856 S23: -0.0020 REMARK 3 S31: 0.2626 S32: -0.5733 S33: -0.0002 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN C AND RESID 1016:1144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.342 67.592 -6.082 REMARK 3 T TENSOR REMARK 3 T11: 0.5589 T22: 0.4361 REMARK 3 T33: 0.4174 T12: -0.0386 REMARK 3 T13: 0.0343 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.5348 L22: 0.7721 REMARK 3 L33: 0.4808 L12: 0.0757 REMARK 3 L13: 0.2246 L23: 0.3137 REMARK 3 S TENSOR REMARK 3 S11: 0.0414 S12: -0.0199 S13: 0.1419 REMARK 3 S21: 0.0399 S22: 0.0376 S23: -0.1984 REMARK 3 S31: -0.1167 S32: -0.0539 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9JZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1300052602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34340 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.322 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.55900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 9% POLYETHYLENE GLYCOL (PEG) 4000, REMARK 280 100MM HEPES PH 7.5, 1% ETHANOL, 4MM CALCIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.99950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.46500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.51200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.46500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.99950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.51200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 907 REMARK 465 GLY A 908 REMARK 465 SER A 909 REMARK 465 VAL A 910 REMARK 465 LYS A 911 REMARK 465 ILE A 912 REMARK 465 ARG A 913 REMARK 465 ASN A 914 REMARK 465 HIS A 1176 REMARK 465 ALA A 1177 REMARK 465 PRO A 1178 REMARK 465 SER A 1179 REMARK 465 GLY A 1180 REMARK 465 PRO A 1181 REMARK 465 PRO A 1182 REMARK 465 ARG A 1183 REMARK 465 ALA A 1184 REMARK 465 ALA A 1185 REMARK 465 LEU A 1186 REMARK 465 ALA A 1187 REMARK 465 LYS A 1188 REMARK 465 SER A 1189 REMARK 465 SER A 1190 REMARK 465 SER B 907 REMARK 465 GLY B 908 REMARK 465 SER B 909 REMARK 465 VAL B 910 REMARK 465 LYS B 911 REMARK 465 ILE B 912 REMARK 465 ARG B 913 REMARK 465 VAL B 1034 REMARK 465 SER B 1035 REMARK 465 ILE B 1036 REMARK 465 MET B 1037 REMARK 465 GLY B 1038 REMARK 465 SER B 1039 REMARK 465 ASP B 1040 REMARK 465 ASP B 1093 REMARK 465 GLY B 1094 REMARK 465 LEU B 1095 REMARK 465 THR B 1096 REMARK 465 HIS B 1097 REMARK 465 GLY B 1172 REMARK 465 SER B 1173 REMARK 465 HIS B 1174 REMARK 465 SER B 1175 REMARK 465 HIS B 1176 REMARK 465 ALA B 1177 REMARK 465 PRO B 1178 REMARK 465 SER B 1179 REMARK 465 GLY B 1180 REMARK 465 PRO B 1181 REMARK 465 PRO B 1182 REMARK 465 ARG B 1183 REMARK 465 ALA B 1184 REMARK 465 ALA B 1185 REMARK 465 LEU B 1186 REMARK 465 ALA B 1187 REMARK 465 LYS B 1188 REMARK 465 SER B 1189 REMARK 465 SER B 1190 REMARK 465 SER C 907 REMARK 465 GLY C 908 REMARK 465 SER C 909 REMARK 465 VAL C 910 REMARK 465 LYS C 911 REMARK 465 ILE C 912 REMARK 465 GLY C 1028 REMARK 465 SER C 1029 REMARK 465 PHE C 1030 REMARK 465 THR C 1031 REMARK 465 ALA C 1032 REMARK 465 SER C 1033 REMARK 465 VAL C 1034 REMARK 465 SER C 1035 REMARK 465 ILE C 1036 REMARK 465 MET C 1037 REMARK 465 GLY C 1038 REMARK 465 SER C 1039 REMARK 465 ASP C 1040 REMARK 465 PRO C 1041 REMARK 465 LYS C 1042 REMARK 465 VAL C 1043 REMARK 465 ARG C 1044 REMARK 465 ALA C 1045 REMARK 465 GLY C 1145 REMARK 465 ARG C 1146 REMARK 465 ALA C 1147 REMARK 465 VAL C 1148 REMARK 465 ARG C 1149 REMARK 465 LYS C 1150 REMARK 465 LEU C 1151 REMARK 465 GLN C 1152 REMARK 465 ALA C 1153 REMARK 465 GLN C 1154 REMARK 465 CYS C 1155 REMARK 465 GLN C 1156 REMARK 465 PHE C 1157 REMARK 465 LEU C 1158 REMARK 465 SER C 1159 REMARK 465 ASP C 1160 REMARK 465 GLY C 1161 REMARK 465 TYR C 1162 REMARK 465 VAL C 1163 REMARK 465 ALA C 1164 REMARK 465 HIS C 1165 REMARK 465 LEU C 1166 REMARK 465 GLY C 1167 REMARK 465 GLN C 1168 REMARK 465 LEU C 1169 REMARK 465 GLU C 1170 REMARK 465 ALA C 1171 REMARK 465 GLY C 1172 REMARK 465 SER C 1173 REMARK 465 HIS C 1174 REMARK 465 SER C 1175 REMARK 465 HIS C 1176 REMARK 465 ALA C 1177 REMARK 465 PRO C 1178 REMARK 465 SER C 1179 REMARK 465 GLY C 1180 REMARK 465 PRO C 1181 REMARK 465 PRO C 1182 REMARK 465 ARG C 1183 REMARK 465 ALA C 1184 REMARK 465 ALA C 1185 REMARK 465 LEU C 1186 REMARK 465 ALA C 1187 REMARK 465 LYS C 1188 REMARK 465 SER C 1189 REMARK 465 SER C 1190 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS C 965 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 944 36.18 74.40 REMARK 500 HIS C1005 22.88 42.26 REMARK 500 REMARK 500 REMARK: NULL DBREF 9JZP A 910 1190 UNP O35954 PITM1_MOUSE 910 1190 DBREF 9JZP B 910 1190 UNP O35954 PITM1_MOUSE 910 1190 DBREF 9JZP C 910 1190 UNP O35954 PITM1_MOUSE 910 1190 SEQADV 9JZP SER A 907 UNP O35954 EXPRESSION TAG SEQADV 9JZP GLY A 908 UNP O35954 EXPRESSION TAG SEQADV 9JZP SER A 909 UNP O35954 EXPRESSION TAG SEQADV 9JZP SER B 907 UNP O35954 EXPRESSION TAG SEQADV 9JZP GLY B 908 UNP O35954 EXPRESSION TAG SEQADV 9JZP SER B 909 UNP O35954 EXPRESSION TAG SEQADV 9JZP SER C 907 UNP O35954 EXPRESSION TAG SEQADV 9JZP GLY C 908 UNP O35954 EXPRESSION TAG SEQADV 9JZP SER C 909 UNP O35954 EXPRESSION TAG SEQRES 1 A 284 SER GLY SER VAL LYS ILE ARG ASN VAL THR SER ASN HIS SEQRES 2 A 284 ARG ALA SER ASP THR VAL VAL CYS GLU GLY ARG PRO GLN SEQRES 3 A 284 VAL LEU ASN GLY ARG PHE MET TYR GLY PRO LEU ASP VAL SEQRES 4 A 284 VAL THR LEU THR GLY GLU LYS VAL ASP VAL TYR VAL MET SEQRES 5 A 284 THR GLN PRO LEU SER GLY LYS TRP ILE HIS PHE GLY THR SEQRES 6 A 284 GLU VAL THR ASN SER SER GLY ARG LEU THR PHE PRO VAL SEQRES 7 A 284 PRO SER GLU ARG ALA LEU GLY ILE GLY VAL TYR PRO VAL SEQRES 8 A 284 ARG MET VAL VAL ARG GLY ASP HIS THR TYR ALA GLU CYS SEQRES 9 A 284 CYS LEU THR VAL VAL SER ARG GLY THR GLU ALA VAL VAL SEQRES 10 A 284 PHE SER ILE ASP GLY SER PHE THR ALA SER VAL SER ILE SEQRES 11 A 284 MET GLY SER ASP PRO LYS VAL ARG ALA GLY ALA VAL ASP SEQRES 12 A 284 VAL VAL ARG HIS TRP GLN ASP SER GLY TYR LEU ILE VAL SEQRES 13 A 284 TYR VAL THR GLY ARG PRO ASP MET GLN LYS HIS ARG VAL SEQRES 14 A 284 VAL ALA TRP LEU SER GLN HIS ASN PHE PRO HIS GLY VAL SEQRES 15 A 284 VAL SER PHE CYS ASP GLY LEU THR HIS ASP PRO LEU ARG SEQRES 16 A 284 GLN LYS ALA MET PHE LEU GLN SER LEU VAL GLN GLU VAL SEQRES 17 A 284 GLU LEU ASN ILE VAL ALA GLY TYR GLY SER PRO LYS ASP SEQRES 18 A 284 VAL ALA VAL TYR ALA ALA LEU GLY LEU SER PRO SER GLN SEQRES 19 A 284 THR TYR ILE VAL GLY ARG ALA VAL ARG LYS LEU GLN ALA SEQRES 20 A 284 GLN CYS GLN PHE LEU SER ASP GLY TYR VAL ALA HIS LEU SEQRES 21 A 284 GLY GLN LEU GLU ALA GLY SER HIS SER HIS ALA PRO SER SEQRES 22 A 284 GLY PRO PRO ARG ALA ALA LEU ALA LYS SER SER SEQRES 1 B 284 SER GLY SER VAL LYS ILE ARG ASN VAL THR SER ASN HIS SEQRES 2 B 284 ARG ALA SER ASP THR VAL VAL CYS GLU GLY ARG PRO GLN SEQRES 3 B 284 VAL LEU ASN GLY ARG PHE MET TYR GLY PRO LEU ASP VAL SEQRES 4 B 284 VAL THR LEU THR GLY GLU LYS VAL ASP VAL TYR VAL MET SEQRES 5 B 284 THR GLN PRO LEU SER GLY LYS TRP ILE HIS PHE GLY THR SEQRES 6 B 284 GLU VAL THR ASN SER SER GLY ARG LEU THR PHE PRO VAL SEQRES 7 B 284 PRO SER GLU ARG ALA LEU GLY ILE GLY VAL TYR PRO VAL SEQRES 8 B 284 ARG MET VAL VAL ARG GLY ASP HIS THR TYR ALA GLU CYS SEQRES 9 B 284 CYS LEU THR VAL VAL SER ARG GLY THR GLU ALA VAL VAL SEQRES 10 B 284 PHE SER ILE ASP GLY SER PHE THR ALA SER VAL SER ILE SEQRES 11 B 284 MET GLY SER ASP PRO LYS VAL ARG ALA GLY ALA VAL ASP SEQRES 12 B 284 VAL VAL ARG HIS TRP GLN ASP SER GLY TYR LEU ILE VAL SEQRES 13 B 284 TYR VAL THR GLY ARG PRO ASP MET GLN LYS HIS ARG VAL SEQRES 14 B 284 VAL ALA TRP LEU SER GLN HIS ASN PHE PRO HIS GLY VAL SEQRES 15 B 284 VAL SER PHE CYS ASP GLY LEU THR HIS ASP PRO LEU ARG SEQRES 16 B 284 GLN LYS ALA MET PHE LEU GLN SER LEU VAL GLN GLU VAL SEQRES 17 B 284 GLU LEU ASN ILE VAL ALA GLY TYR GLY SER PRO LYS ASP SEQRES 18 B 284 VAL ALA VAL TYR ALA ALA LEU GLY LEU SER PRO SER GLN SEQRES 19 B 284 THR TYR ILE VAL GLY ARG ALA VAL ARG LYS LEU GLN ALA SEQRES 20 B 284 GLN CYS GLN PHE LEU SER ASP GLY TYR VAL ALA HIS LEU SEQRES 21 B 284 GLY GLN LEU GLU ALA GLY SER HIS SER HIS ALA PRO SER SEQRES 22 B 284 GLY PRO PRO ARG ALA ALA LEU ALA LYS SER SER SEQRES 1 C 284 SER GLY SER VAL LYS ILE ARG ASN VAL THR SER ASN HIS SEQRES 2 C 284 ARG ALA SER ASP THR VAL VAL CYS GLU GLY ARG PRO GLN SEQRES 3 C 284 VAL LEU ASN GLY ARG PHE MET TYR GLY PRO LEU ASP VAL SEQRES 4 C 284 VAL THR LEU THR GLY GLU LYS VAL ASP VAL TYR VAL MET SEQRES 5 C 284 THR GLN PRO LEU SER GLY LYS TRP ILE HIS PHE GLY THR SEQRES 6 C 284 GLU VAL THR ASN SER SER GLY ARG LEU THR PHE PRO VAL SEQRES 7 C 284 PRO SER GLU ARG ALA LEU GLY ILE GLY VAL TYR PRO VAL SEQRES 8 C 284 ARG MET VAL VAL ARG GLY ASP HIS THR TYR ALA GLU CYS SEQRES 9 C 284 CYS LEU THR VAL VAL SER ARG GLY THR GLU ALA VAL VAL SEQRES 10 C 284 PHE SER ILE ASP GLY SER PHE THR ALA SER VAL SER ILE SEQRES 11 C 284 MET GLY SER ASP PRO LYS VAL ARG ALA GLY ALA VAL ASP SEQRES 12 C 284 VAL VAL ARG HIS TRP GLN ASP SER GLY TYR LEU ILE VAL SEQRES 13 C 284 TYR VAL THR GLY ARG PRO ASP MET GLN LYS HIS ARG VAL SEQRES 14 C 284 VAL ALA TRP LEU SER GLN HIS ASN PHE PRO HIS GLY VAL SEQRES 15 C 284 VAL SER PHE CYS ASP GLY LEU THR HIS ASP PRO LEU ARG SEQRES 16 C 284 GLN LYS ALA MET PHE LEU GLN SER LEU VAL GLN GLU VAL SEQRES 17 C 284 GLU LEU ASN ILE VAL ALA GLY TYR GLY SER PRO LYS ASP SEQRES 18 C 284 VAL ALA VAL TYR ALA ALA LEU GLY LEU SER PRO SER GLN SEQRES 19 C 284 THR TYR ILE VAL GLY ARG ALA VAL ARG LYS LEU GLN ALA SEQRES 20 C 284 GLN CYS GLN PHE LEU SER ASP GLY TYR VAL ALA HIS LEU SEQRES 21 C 284 GLY GLN LEU GLU ALA GLY SER HIS SER HIS ALA PRO SER SEQRES 22 C 284 GLY PRO PRO ARG ALA ALA LEU ALA LYS SER SER HET PEG A1201 17 HET PEG B1201 17 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 4 PEG 2(C4 H10 O3) FORMUL 6 HOH *143(H2 O) HELIX 1 AA1 PRO A 985 ALA A 989 5 5 HELIX 2 AA2 GLY A 1046 SER A 1057 1 12 HELIX 3 AA3 GLN A 1071 HIS A 1082 1 12 HELIX 4 AA4 ASP A 1098 GLU A 1113 1 16 HELIX 5 AA5 LYS A 1126 LEU A 1134 1 9 HELIX 6 AA6 SER A 1137 SER A 1139 5 3 HELIX 7 AA7 ALA A 1147 ALA A 1153 1 7 HELIX 8 AA8 GLY A 1161 GLY A 1172 1 12 HELIX 9 AA9 GLY B 941 VAL B 945 5 5 HELIX 10 AB1 PRO B 985 ALA B 989 5 5 HELIX 11 AB2 ILE B 1026 PHE B 1030 1 5 HELIX 12 AB3 GLY B 1046 SER B 1057 1 12 HELIX 13 AB4 PRO B 1068 MET B 1070 5 3 HELIX 14 AB5 GLN B 1071 HIS B 1082 1 12 HELIX 15 AB6 PRO B 1099 GLU B 1115 1 17 HELIX 16 AB7 LYS B 1126 LEU B 1134 1 9 HELIX 17 AB8 SER B 1137 SER B 1139 5 3 HELIX 18 AB9 VAL B 1148 GLN B 1152 5 5 HELIX 19 AC1 GLY B 1161 ALA B 1171 1 11 HELIX 20 AC2 GLY C 941 VAL C 945 5 5 HELIX 21 AC3 PRO C 985 ALA C 989 5 5 HELIX 22 AC4 ALA C 1047 SER C 1057 1 11 HELIX 23 AC5 GLN C 1071 HIS C 1082 1 12 HELIX 24 AC6 ARG C 1101 GLU C 1113 1 13 HELIX 25 AC7 SER C 1124 LEU C 1134 1 11 HELIX 26 AC8 SER C 1137 SER C 1139 5 3 SHEET 1 AA1 3 ARG A 920 ALA A 921 0 SHEET 2 AA1 3 VAL A 933 ARG A 937 -1 O ARG A 937 N ARG A 920 SHEET 3 AA1 3 ARG A 979 PRO A 983 -1 O PHE A 982 N LEU A 934 SHEET 1 AA2 5 THR A 924 CYS A 927 0 SHEET 2 AA2 5 TYR A1007 VAL A1015 1 O THR A1013 N THR A 924 SHEET 3 AA2 5 GLY A 993 VAL A1001 -1 N MET A 999 O ALA A1008 SHEET 4 AA2 5 LYS A 952 VAL A 957 -1 N ASP A 954 O VAL A1000 SHEET 5 AA2 5 ILE A 967 VAL A 973 -1 O PHE A 969 N VAL A 955 SHEET 1 AA3 2 MET A 939 TYR A 940 0 SHEET 2 AA3 2 VAL A 946 THR A 947 -1 O VAL A 946 N TYR A 940 SHEET 1 AA4 6 VAL A1088 CYS A1092 0 SHEET 2 AA4 6 LEU A1060 PRO A1068 1 N TYR A1063 O VAL A1088 SHEET 3 AA4 6 GLU A1020 SER A1025 1 N PHE A1024 O VAL A1062 SHEET 4 AA4 6 ASN A1117 GLY A1123 1 O TYR A1122 N SER A1025 SHEET 5 AA4 6 THR A1141 ILE A1143 1 O TYR A1142 N GLY A1121 SHEET 6 AA4 6 GLN A1156 PHE A1157 1 O GLN A1156 N THR A1141 SHEET 1 AA5 3 ARG B 920 ALA B 921 0 SHEET 2 AA5 3 VAL B 933 ARG B 937 -1 O ARG B 937 N ARG B 920 SHEET 3 AA5 3 ARG B 979 PRO B 983 -1 O PHE B 982 N LEU B 934 SHEET 1 AA6 5 THR B 924 CYS B 927 0 SHEET 2 AA6 5 TYR B1007 VAL B1015 1 O THR B1013 N THR B 924 SHEET 3 AA6 5 GLY B 993 VAL B1001 -1 N TYR B 995 O LEU B1012 SHEET 4 AA6 5 LYS B 952 VAL B 957 -1 N TYR B 956 O ARG B 998 SHEET 5 AA6 5 ILE B 967 VAL B 973 -1 O PHE B 969 N VAL B 955 SHEET 1 AA7 2 MET B 939 TYR B 940 0 SHEET 2 AA7 2 VAL B 946 THR B 947 -1 O VAL B 946 N TYR B 940 SHEET 1 AA8 6 VAL B1088 SER B1090 0 SHEET 2 AA8 6 LEU B1060 VAL B1064 1 N TYR B1063 O VAL B1088 SHEET 3 AA8 6 GLU B1020 SER B1025 1 N PHE B1024 O VAL B1062 SHEET 4 AA8 6 ASN B1117 GLY B1123 1 O TYR B1122 N VAL B1023 SHEET 5 AA8 6 THR B1141 ILE B1143 1 O TYR B1142 N GLY B1121 SHEET 6 AA8 6 GLN B1156 PHE B1157 1 O GLN B1156 N THR B1141 SHEET 1 AA9 2 THR B1031 ALA B1032 0 SHEET 2 AA9 2 LYS B1042 VAL B1043 -1 O LYS B1042 N ALA B1032 SHEET 1 AB1 3 ARG C 920 ALA C 921 0 SHEET 2 AB1 3 VAL C 933 ARG C 937 -1 O ARG C 937 N ARG C 920 SHEET 3 AB1 3 ARG C 979 PRO C 983 -1 O PHE C 982 N LEU C 934 SHEET 1 AB2 5 THR C 924 CYS C 927 0 SHEET 2 AB2 5 TYR C1007 VAL C1015 1 O THR C1013 N THR C 924 SHEET 3 AB2 5 GLY C 993 VAL C1001 -1 N MET C 999 O ALA C1008 SHEET 4 AB2 5 LYS C 952 VAL C 957 -1 N ASP C 954 O VAL C1000 SHEET 5 AB2 5 ILE C 967 VAL C 973 -1 O GLY C 970 N VAL C 955 SHEET 1 AB3 2 MET C 939 TYR C 940 0 SHEET 2 AB3 2 VAL C 946 THR C 947 -1 O VAL C 946 N TYR C 940 SHEET 1 AB4 5 VAL C1088 CYS C1092 0 SHEET 2 AB4 5 LEU C1060 PRO C1068 1 N TYR C1063 O VAL C1088 SHEET 3 AB4 5 GLU C1020 SER C1025 1 N PHE C1024 O VAL C1062 SHEET 4 AB4 5 ASN C1117 GLY C1123 1 O TYR C1122 N VAL C1023 SHEET 5 AB4 5 THR C1141 ILE C1143 1 O TYR C1142 N GLY C1121 CRYST1 61.999 109.024 116.930 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016129 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008552 0.00000 CONECT 5550 5551 5552 5557 5558 CONECT 5551 5550 5559 CONECT 5552 5550 5553 5560 5561 CONECT 5553 5552 5554 CONECT 5554 5553 5555 5562 5563 CONECT 5555 5554 5556 5564 5565 CONECT 5556 5555 5566 CONECT 5557 5550 CONECT 5558 5550 CONECT 5559 5551 CONECT 5560 5552 CONECT 5561 5552 CONECT 5562 5554 CONECT 5563 5554 CONECT 5564 5555 CONECT 5565 5555 CONECT 5566 5556 CONECT 5567 5568 5569 5574 5575 CONECT 5568 5567 5576 CONECT 5569 5567 5570 5577 5578 CONECT 5570 5569 5571 CONECT 5571 5570 5572 5579 5580 CONECT 5572 5571 5573 5581 5582 CONECT 5573 5572 5583 CONECT 5574 5567 CONECT 5575 5567 CONECT 5576 5568 CONECT 5577 5569 CONECT 5578 5569 CONECT 5579 5571 CONECT 5580 5571 CONECT 5581 5572 CONECT 5582 5572 CONECT 5583 5573 MASTER 467 0 2 26 49 0 0 6 5703 3 34 66 END