HEADER IMMUNE SYSTEM 18-OCT-24 9K2S TITLE KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DL2 IN COMPLEX WITH HLA- TITLE 2 C*1202 AND IY10 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE FROM P51 RT; COMPND 3 CHAIN: D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MHC CLASS I ANTIGEN; COMPND 7 CHAIN: A; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: KIR2DL2; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: KILLER CELL IMMUNOGLOBULIN LIKE RECEPTOR,TWO IG DOMAINS AND COMPND 17 LONG CYTOPLASMIC TAIL 2,KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR COMPND 18 2DL2,KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR TWO DOMAINS LONG COMPND 19 CYTOPLASMIC TAIL 2; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 (Z2/CDC-Z34 SOURCE 4 ISOLATE); SOURCE 5 ORGANISM_TAXID: 11683; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: HLA-C; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606; SOURCE 24 GENE: KIR2DL2, KIR2DL3; SOURCE 25 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 26 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CD8+ T CELLS, HIV-1, ESCAPE MUTANT, KIR2DL2, TCR, HLA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR T.CHIKATA,K.KUROKI,N.KUSE,A.KLISZCZAK,W.PAES,N.TOMIOKA,R.PARKER, AUTHOR 2 A.AFLALO,T.AKAHOSHI,R.YAMASHITA,R.SAKATA,H.KUSAKA,Y.WATANABE, AUTHOR 3 A.NICASTRI,H.MATSUBARA,T.OSE,S.KITA,S.OKA,H.GATANAGA,Z.LIN, AUTHOR 4 N.TERNETTE,P.BORROW,K.MAENAKA,M.TAKIGUCHI REVDAT 1 17-SEP-25 9K2S 0 JRNL AUTH T.CHIKATA,K.KUROKI,N.KUSE,A.KLISZCZAK,W.PAES,N.TOMIOKA, JRNL AUTH 2 R.PARKER,A.AFLALO,T.AKAHOSHI,R.YAMASHITA,R.SAKATA,H.KUSAKA, JRNL AUTH 3 Y.WATANABE,A.NICASTRI,H.MATSUBARA,T.OSE,S.KITA,S.OKA, JRNL AUTH 4 H.GATANAGA,Z.LIN,N.TERNETTE,P.BORROW,K.MAENAKA,M.TAKIGUCHI JRNL TITL KILLER CELL IMMUNOGLOBULIN-LIKE RECEPTOR 2DL2 IN COMPLEX JRNL TITL 2 WITH HLA-C*1202 AND IY10 PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 22781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6100 - 4.8000 0.91 2728 178 0.2102 0.2711 REMARK 3 2 4.8000 - 3.8100 0.93 2691 129 0.1854 0.2194 REMARK 3 3 3.8100 - 3.3300 0.94 2723 151 0.2315 0.2928 REMARK 3 4 3.3300 - 3.0200 0.95 2715 148 0.2654 0.3257 REMARK 3 5 3.0200 - 2.8100 0.95 2684 151 0.2900 0.3356 REMARK 3 6 2.8100 - 2.6400 0.95 2751 138 0.3021 0.3928 REMARK 3 7 2.6400 - 2.5100 0.95 2710 144 0.3169 0.3626 REMARK 3 8 2.5100 - 2.4000 0.91 2616 124 0.3161 0.3704 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.319 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4692 REMARK 3 ANGLE : 1.151 6365 REMARK 3 CHIRALITY : 0.062 655 REMARK 3 PLANARITY : 0.011 836 REMARK 3 DIHEDRAL : 16.474 1724 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8452 2.0351 -17.7186 REMARK 3 T TENSOR REMARK 3 T11: 0.1888 T22: 0.3485 REMARK 3 T33: 0.3056 T12: -0.0092 REMARK 3 T13: 0.0151 T23: 0.0829 REMARK 3 L TENSOR REMARK 3 L11: 7.5192 L22: 5.1308 REMARK 3 L33: 3.2286 L12: 4.0061 REMARK 3 L13: 4.8028 L23: 3.2570 REMARK 3 S TENSOR REMARK 3 S11: -0.7135 S12: 0.3622 S13: 0.2872 REMARK 3 S21: -0.5072 S22: 0.4231 S23: 0.5235 REMARK 3 S31: -0.1519 S32: 0.5780 S33: 0.2616 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 85 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3428 10.7758 -10.1836 REMARK 3 T TENSOR REMARK 3 T11: 0.2337 T22: 0.1531 REMARK 3 T33: 0.2216 T12: 0.0205 REMARK 3 T13: -0.0114 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 5.5877 L22: 2.2127 REMARK 3 L33: 1.1090 L12: 2.0355 REMARK 3 L13: -0.3020 L23: -0.3166 REMARK 3 S TENSOR REMARK 3 S11: 0.0022 S12: 0.2451 S13: 0.7251 REMARK 3 S21: -0.0807 S22: 0.0086 S23: 0.2931 REMARK 3 S31: -0.2574 S32: -0.0739 S33: -0.0350 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 86 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4795 -5.6861 -10.5971 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.1123 REMARK 3 T33: 0.2084 T12: 0.0378 REMARK 3 T13: -0.0107 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 3.9599 L22: 0.8072 REMARK 3 L33: 1.0732 L12: 1.6148 REMARK 3 L13: -0.0752 L23: 0.3115 REMARK 3 S TENSOR REMARK 3 S11: 0.2541 S12: 0.0116 S13: -0.2829 REMARK 3 S21: 0.0742 S22: -0.1404 S23: 0.0173 REMARK 3 S31: 0.0059 S32: 0.0370 S33: -0.1110 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9154 6.2971 17.2981 REMARK 3 T TENSOR REMARK 3 T11: 0.1448 T22: 0.2057 REMARK 3 T33: 0.2511 T12: 0.0106 REMARK 3 T13: -0.0243 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.7285 L22: 0.8542 REMARK 3 L33: 6.8230 L12: -0.2519 REMARK 3 L13: 0.4439 L23: 0.5915 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.1796 S13: -0.0906 REMARK 3 S21: 0.1154 S22: 0.0736 S23: -0.0937 REMARK 3 S31: 0.5641 S32: 0.2748 S33: -0.0402 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1314 14.5283 15.5057 REMARK 3 T TENSOR REMARK 3 T11: 0.2357 T22: 0.2354 REMARK 3 T33: 0.1660 T12: -0.0007 REMARK 3 T13: 0.1223 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 2.5140 L22: 3.2072 REMARK 3 L33: 3.3408 L12: -0.3848 REMARK 3 L13: -0.4800 L23: -0.5073 REMARK 3 S TENSOR REMARK 3 S11: -0.0417 S12: -0.3036 S13: -0.1715 REMARK 3 S21: -0.1286 S22: 0.0875 S23: 0.0915 REMARK 3 S31: 0.0661 S32: 0.1583 S33: 0.0039 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0905 15.5043 11.0346 REMARK 3 T TENSOR REMARK 3 T11: 0.1603 T22: 0.2813 REMARK 3 T33: 0.1689 T12: 0.0080 REMARK 3 T13: 0.0251 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.8598 L22: 7.0185 REMARK 3 L33: 2.9816 L12: 3.3124 REMARK 3 L13: 1.6049 L23: 3.3218 REMARK 3 S TENSOR REMARK 3 S11: -0.3023 S12: -0.1702 S13: 0.1455 REMARK 3 S21: -0.5014 S22: 0.0088 S23: 0.3140 REMARK 3 S31: -0.1777 S32: -0.2756 S33: 0.2833 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8443 16.4277 7.7502 REMARK 3 T TENSOR REMARK 3 T11: 0.2271 T22: 0.1780 REMARK 3 T33: 0.1210 T12: 0.0192 REMARK 3 T13: -0.0092 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 3.9132 L22: 4.1837 REMARK 3 L33: 3.1030 L12: 0.2542 REMARK 3 L13: -0.2025 L23: 3.5510 REMARK 3 S TENSOR REMARK 3 S11: 0.1325 S12: 0.1352 S13: 0.2383 REMARK 3 S21: 0.1088 S22: 0.1953 S23: -0.1487 REMARK 3 S31: -0.1197 S32: 0.1174 S33: -0.3282 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3500 28.5915 25.5297 REMARK 3 T TENSOR REMARK 3 T11: 0.5260 T22: 0.6110 REMARK 3 T33: 0.4081 T12: 0.0907 REMARK 3 T13: -0.0995 T23: -0.1984 REMARK 3 L TENSOR REMARK 3 L11: 1.9874 L22: 9.1952 REMARK 3 L33: 8.8971 L12: 4.0316 REMARK 3 L13: 2.6339 L23: 4.4647 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: -2.0026 S13: 0.8386 REMARK 3 S21: 1.7316 S22: 0.1406 S23: -0.5079 REMARK 3 S31: 0.5182 S32: 0.8021 S33: -0.1884 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 79 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5684 13.3263 15.8079 REMARK 3 T TENSOR REMARK 3 T11: 0.1887 T22: 0.2484 REMARK 3 T33: 0.2680 T12: 0.0273 REMARK 3 T13: 0.0253 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 4.1117 L22: 8.4672 REMARK 3 L33: 3.7947 L12: 0.8678 REMARK 3 L13: 0.5126 L23: 2.7510 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.5384 S13: -0.1290 REMARK 3 S21: 0.3276 S22: -0.2309 S23: 1.0384 REMARK 3 S31: -0.0600 S32: -0.4986 S33: 0.3099 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3677 16.2198 23.0602 REMARK 3 T TENSOR REMARK 3 T11: 0.2405 T22: 0.3688 REMARK 3 T33: 0.1500 T12: 0.0804 REMARK 3 T13: 0.0609 T23: -0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.1634 L22: 3.5429 REMARK 3 L33: 4.1449 L12: 1.1990 REMARK 3 L13: -3.3870 L23: -2.5517 REMARK 3 S TENSOR REMARK 3 S11: -0.1457 S12: -1.1034 S13: -0.1327 REMARK 3 S21: 0.4706 S22: -0.0747 S23: -0.0452 REMARK 3 S31: -0.3815 S32: 0.1373 S33: 0.2296 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 7 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1688 10.4573 -31.5453 REMARK 3 T TENSOR REMARK 3 T11: 0.2404 T22: 0.2038 REMARK 3 T33: 0.2004 T12: -0.0064 REMARK 3 T13: 0.0938 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 2.9832 L22: 2.4372 REMARK 3 L33: 2.7133 L12: -1.0122 REMARK 3 L13: 0.7292 L23: -0.0202 REMARK 3 S TENSOR REMARK 3 S11: 0.0834 S12: 0.1634 S13: 0.1643 REMARK 3 S21: -0.2168 S22: -0.0928 S23: -0.1448 REMARK 3 S31: -0.2543 S32: -0.3104 S33: 0.0221 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 103 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0602 -16.6715 -36.2031 REMARK 3 T TENSOR REMARK 3 T11: 0.2091 T22: 0.2072 REMARK 3 T33: 0.2755 T12: 0.0056 REMARK 3 T13: 0.0461 T23: -0.0562 REMARK 3 L TENSOR REMARK 3 L11: 2.5980 L22: 2.6496 REMARK 3 L33: 5.2497 L12: 0.8384 REMARK 3 L13: 2.5214 L23: 1.0965 REMARK 3 S TENSOR REMARK 3 S11: 0.0870 S12: 0.4369 S13: -0.1774 REMARK 3 S21: 0.1003 S22: 0.0925 S23: -0.2048 REMARK 3 S31: 0.5852 S32: 0.4927 S33: -0.1408 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 141 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3009 -13.6529 -34.0721 REMARK 3 T TENSOR REMARK 3 T11: 0.3070 T22: 0.1613 REMARK 3 T33: 0.2847 T12: -0.0073 REMARK 3 T13: 0.0063 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.5511 L22: 2.9527 REMARK 3 L33: 3.5225 L12: 0.7074 REMARK 3 L13: -1.2696 L23: 1.3085 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: 0.0564 S13: -0.0812 REMARK 3 S21: -0.2058 S22: 0.0284 S23: -0.2620 REMARK 3 S31: 0.0858 S32: -0.2222 S33: 0.0128 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9K2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1300050721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22791 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 48.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 10.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M K/NA TARTRATE, 20% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 22.29250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS A 2 REMARK 465 SER A 3 REMARK 465 ALA A 41 REMARK 465 ALA A 42 REMARK 465 MET B -18 REMARK 465 SER B -17 REMARK 465 ARG B -16 REMARK 465 SER B -15 REMARK 465 VAL B -14 REMARK 465 ALA B -13 REMARK 465 LEU B -12 REMARK 465 ALA B -11 REMARK 465 VAL B -10 REMARK 465 VAL B -9 REMARK 465 ALA B -8 REMARK 465 LEU B -7 REMARK 465 LEU B -6 REMARK 465 SER B -5 REMARK 465 LEU B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 LEU B -1 REMARK 465 GLU B 0 REMARK 465 ALA B 1 REMARK 465 MET C 0 REMARK 465 HIS C 1 REMARK 465 GLU C 2 REMARK 465 GLY C 3 REMARK 465 VAL C 4 REMARK 465 HIS C 5 REMARK 465 ARG C 6 REMARK 465 HIS C 85 REMARK 465 SER C 86 REMARK 465 PRO C 87 REMARK 465 TYR C 88 REMARK 465 GLN C 89 REMARK 465 GLU C 142 REMARK 465 GLY C 143 REMARK 465 GLY C 167 REMARK 465 PRO C 168 REMARK 465 ALA C 169 REMARK 465 THR C 170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO D 5 90.24 -68.30 REMARK 500 VAL D 6 -77.26 -87.08 REMARK 500 ASP A 30 -124.84 62.09 REMARK 500 GLU A 54 3.79 -64.03 REMARK 500 ASP A 115 103.67 -164.72 REMARK 500 TYR A 124 -67.11 -134.06 REMARK 500 ASP A 130 -9.50 -58.25 REMARK 500 SER A 196 -151.72 48.45 REMARK 500 GLN A 225 58.35 -100.60 REMARK 500 TRP B 61 -2.13 78.87 REMARK 500 HIS C 146 4.45 -155.85 REMARK 500 REMARK 500 REMARK: NULL DBREF 9K2S D 1 10 UNP P12499 POL_HV1Z2 897 906 DBREF1 9K2S A 2 277 UNP A0A165EYK7_HUMAN DBREF2 9K2S A A0A165EYK7 25 300 DBREF 9K2S B -18 100 UNP P61769 B2MG_HUMAN 1 119 DBREF 9K2S C 1 200 UNP Q8N742 Q8N742_HUMAN 22 221 SEQADV 9K2S VAL B -9 UNP P61769 LEU 10 CONFLICT SEQADV 9K2S MET C 0 UNP Q8N742 INITIATING METHIONINE SEQRES 1 D 10 ILE LEU LYS GLU PRO VAL HIS GLY VAL TYR SEQRES 1 A 276 CYS SER HIS SER MET ARG TYR PHE TYR THR ALA VAL SER SEQRES 2 A 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA ALA SER PRO ARG GLY GLU PRO ARG ALA PRO TRP VAL SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP ARG GLU THR GLN SEQRES 6 A 276 LYS TYR LYS ARG GLN ALA GLN ALA ASP ARG VAL SER LEU SEQRES 7 A 276 ARG ASN LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 276 SER HIS THR LEU GLN ARG MET TYR GLY CYS ASP LEU GLY SEQRES 9 A 276 PRO ASP GLY ARG LEU LEU ARG GLY TYR ASP GLN SER ALA SEQRES 10 A 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 ARG SER TRP THR ALA ALA ASP THR ALA ALA GLN ILE THR SEQRES 12 A 276 GLN ARG LYS TRP GLU ALA ALA ARG GLU ALA GLU GLN TRP SEQRES 13 A 276 ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 276 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG ALA SEQRES 15 A 276 GLU HIS PRO LYS THR HIS VAL THR HIS HIS PRO VAL SER SEQRES 16 A 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 276 VAL GLN HIS GLU GLY LEU PRO GLU PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 119 MET SER ARG SER VAL ALA LEU ALA VAL VAL ALA LEU LEU SEQRES 2 B 119 SER LEU SER GLY LEU GLU ALA ILE GLN ARG THR PRO LYS SEQRES 3 B 119 ILE GLN VAL TYR SER ARG HIS PRO ALA GLU ASN GLY LYS SEQRES 4 B 119 SER ASN PHE LEU ASN CYS TYR VAL SER GLY PHE HIS PRO SEQRES 5 B 119 SER ASP ILE GLU VAL ASP LEU LEU LYS ASN GLY GLU ARG SEQRES 6 B 119 ILE GLU LYS VAL GLU HIS SER ASP LEU SER PHE SER LYS SEQRES 7 B 119 ASP TRP SER PHE TYR LEU LEU TYR TYR THR GLU PHE THR SEQRES 8 B 119 PRO THR GLU LYS ASP GLU TYR ALA CYS ARG VAL ASN HIS SEQRES 9 B 119 VAL THR LEU SER GLN PRO LYS ILE VAL LYS TRP ASP ARG SEQRES 10 B 119 ASP MET SEQRES 1 C 201 MET HIS GLU GLY VAL HIS ARG LYS PRO SER LEU LEU ALA SEQRES 2 C 201 HIS PRO GLY ARG LEU VAL LYS SER GLU GLU THR VAL ILE SEQRES 3 C 201 LEU GLN CYS TRP SER ASP VAL ARG PHE GLU HIS PHE LEU SEQRES 4 C 201 LEU HIS ARG GLU GLY LYS PHE LYS ASP THR LEU HIS LEU SEQRES 5 C 201 ILE GLY GLU HIS HIS ASP GLY VAL SER LYS ALA ASN PHE SEQRES 6 C 201 SER ILE GLY PRO MET MET GLN ASP LEU ALA GLY THR TYR SEQRES 7 C 201 ARG CYS TYR GLY SER VAL THR HIS SER PRO TYR GLN LEU SEQRES 8 C 201 SER ALA PRO SER ASP PRO LEU ASP ILE VAL ILE THR GLY SEQRES 9 C 201 LEU TYR GLU LYS PRO SER LEU SER ALA GLN PRO GLY PRO SEQRES 10 C 201 THR VAL LEU ALA GLY GLU SER VAL THR LEU SER CYS SER SEQRES 11 C 201 SER ARG SER SER TYR ASP MET TYR HIS LEU SER ARG GLU SEQRES 12 C 201 GLY GLU ALA HIS GLU CYS ARG PHE SER ALA GLY PRO LYS SEQRES 13 C 201 VAL ASN GLY THR PHE GLN ALA ASP PHE PRO LEU GLY PRO SEQRES 14 C 201 ALA THR HIS GLY GLY THR TYR ARG CYS PHE GLY SER PHE SEQRES 15 C 201 ARG ASP SER PRO TYR GLU TRP SER ASN SER SER ASP PRO SEQRES 16 C 201 LEU LEU VAL SER VAL THR FORMUL 5 HOH *144(H2 O) HELIX 1 AA1 GLY A 57 TYR A 86 1 30 HELIX 2 AA2 ASP A 138 ALA A 151 1 14 HELIX 3 AA3 ARG A 152 GLY A 163 1 12 HELIX 4 AA4 GLY A 163 GLY A 176 1 14 HELIX 5 AA5 GLY A 176 GLN A 181 1 6 HELIX 6 AA6 GLU A 254 GLN A 256 5 3 HELIX 7 AA7 MET C 70 ALA C 74 5 5 SHEET 1 AA1 8 GLU A 47 PRO A 48 0 SHEET 2 AA1 8 THR A 32 ASP A 38 -1 N ARG A 36 O GLU A 47 SHEET 3 AA1 8 ARG A 22 VAL A 29 -1 N GLY A 27 O PHE A 34 SHEET 4 AA1 8 SER A 5 VAL A 13 -1 N ARG A 7 O TYR A 28 SHEET 5 AA1 8 THR A 95 LEU A 104 -1 O ARG A 98 N TYR A 10 SHEET 6 AA1 8 LEU A 110 TYR A 119 -1 O GLN A 116 N MET A 99 SHEET 7 AA1 8 LYS A 122 LEU A 127 -1 O ILE A 125 N SER A 117 SHEET 8 AA1 8 TRP A 134 ALA A 136 -1 O THR A 135 N ALA A 126 SHEET 1 AA2 4 LYS A 187 VAL A 195 0 SHEET 2 AA2 4 GLU A 199 PHE A 209 -1 O THR A 201 N HIS A 193 SHEET 3 AA2 4 PHE A 242 PRO A 251 -1 O VAL A 248 N LEU A 202 SHEET 4 AA2 4 THR A 229 LEU A 231 -1 N GLU A 230 O ALA A 247 SHEET 1 AA3 4 LYS A 187 VAL A 195 0 SHEET 2 AA3 4 GLU A 199 PHE A 209 -1 O THR A 201 N HIS A 193 SHEET 3 AA3 4 PHE A 242 PRO A 251 -1 O VAL A 248 N LEU A 202 SHEET 4 AA3 4 ARG A 235 PRO A 236 -1 N ARG A 235 O GLN A 243 SHEET 1 AA4 4 GLU A 223 ASP A 224 0 SHEET 2 AA4 4 THR A 215 ARG A 220 -1 N ARG A 220 O GLU A 223 SHEET 3 AA4 4 TYR A 258 GLN A 263 -1 O GLN A 263 N THR A 215 SHEET 4 AA4 4 LEU A 271 LEU A 273 -1 O LEU A 273 N CYS A 260 SHEET 1 AA5 4 LYS B 7 SER B 12 0 SHEET 2 AA5 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA5 4 PHE B 63 PHE B 71 -1 O THR B 69 N LEU B 24 SHEET 4 AA5 4 GLU B 51 HIS B 52 -1 N GLU B 51 O TYR B 68 SHEET 1 AA6 4 LYS B 7 SER B 12 0 SHEET 2 AA6 4 ASN B 22 PHE B 31 -1 O ASN B 25 N TYR B 11 SHEET 3 AA6 4 PHE B 63 PHE B 71 -1 O THR B 69 N LEU B 24 SHEET 4 AA6 4 SER B 56 PHE B 57 -1 N SER B 56 O TYR B 64 SHEET 1 AA7 4 GLU B 45 ARG B 46 0 SHEET 2 AA7 4 GLU B 37 LYS B 42 -1 N LYS B 42 O GLU B 45 SHEET 3 AA7 4 TYR B 79 ASN B 84 -1 O ARG B 82 N ASP B 39 SHEET 4 AA7 4 LYS B 92 LYS B 95 -1 O LYS B 92 N VAL B 83 SHEET 1 AA8 4 SER C 9 HIS C 13 0 SHEET 2 AA8 4 VAL C 24 SER C 30 -1 O GLN C 27 N LEU C 11 SHEET 3 AA8 4 VAL C 59 ILE C 66 -1 O ILE C 66 N VAL C 24 SHEET 4 AA8 4 GLU C 54 HIS C 56 -1 N GLU C 54 O LYS C 61 SHEET 1 AA9 5 LEU C 17 LYS C 19 0 SHEET 2 AA9 5 LEU C 97 THR C 102 1 O VAL C 100 N VAL C 18 SHEET 3 AA9 5 GLY C 75 SER C 82 -1 N GLY C 75 O ILE C 99 SHEET 4 AA9 5 HIS C 36 GLU C 42 -1 N LEU C 38 O TYR C 80 SHEET 5 AA9 5 ASP C 47 LEU C 51 -1 O LEU C 49 N LEU C 39 SHEET 1 AB1 3 SER C 109 GLN C 113 0 SHEET 2 AB1 3 THR C 125 SER C 130 -1 O SER C 129 N SER C 109 SHEET 3 AB1 3 PHE C 160 PRO C 165 -1 O PHE C 160 N SER C 130 SHEET 1 AB2 5 THR C 117 VAL C 118 0 SHEET 2 AB2 5 LEU C 195 VAL C 199 1 O SER C 198 N VAL C 118 SHEET 3 AB2 5 GLY C 173 PHE C 181 -1 N TYR C 175 O LEU C 195 SHEET 4 AB2 5 MET C 136 SER C 140 -1 N HIS C 138 O PHE C 178 SHEET 5 AB2 5 GLU C 147 PHE C 150 -1 O GLU C 147 N LEU C 139 SHEET 1 AB3 4 THR C 117 VAL C 118 0 SHEET 2 AB3 4 LEU C 195 VAL C 199 1 O SER C 198 N VAL C 118 SHEET 3 AB3 4 GLY C 173 PHE C 181 -1 N TYR C 175 O LEU C 195 SHEET 4 AB3 4 SER C 184 TRP C 188 -1 O SER C 184 N PHE C 181 SSBOND 1 CYS A 102 CYS A 165 1555 1555 2.02 SSBOND 2 CYS A 204 CYS A 260 1555 1555 2.00 SSBOND 3 CYS B 26 CYS B 81 1555 1555 2.02 SSBOND 4 CYS C 28 CYS C 79 1555 1555 2.02 SSBOND 5 CYS C 128 CYS C 177 1555 1555 2.05 CISPEP 1 TYR A 210 PRO A 211 0 -1.38 CISPEP 2 HIS B 32 PRO B 33 0 1.46 CISPEP 3 HIS C 13 PRO C 14 0 4.24 CISPEP 4 GLN C 113 PRO C 114 0 3.06 CISPEP 5 GLY C 153 PRO C 154 0 21.48 CRYST1 84.493 44.585 88.243 90.00 111.45 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011835 0.000000 0.004650 0.00000 SCALE2 0.000000 0.022429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012176 0.00000 CONECT 892 1398 CONECT 1398 892 CONECT 1727 2175 CONECT 2175 1727 CONECT 2524 2987 CONECT 2987 2524 CONECT 3319 3736 CONECT 3736 3319 CONECT 4046 4387 CONECT 4387 4046 MASTER 458 0 0 7 53 0 0 6 4711 4 10 49 END