HEADER GENE REGULATION 22-OCT-24 9K6H TITLE STRUCTURE OF HUMAN LINE-1 ORF2P WITH ENDOGENOUS DNA AND RNA/CDNA TITLE 2 HYBRID BOUND TO DNTP AND MN2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: LINE-1 RETROTRANSPOSABLE ELEMENT ORF2 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ORF2P; COMPND 5 EC: 2.7.7.49,3.1.21.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GENOMIC DNA (TOP STRAND); COMPND 9 CHAIN: B; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: GENOMIC DNA (BOTTOM STRAND); COMPND 12 CHAIN: C; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: COMPLEMENTARY DNA; COMPND 15 CHAIN: D; COMPND 16 MOL_ID: 5; COMPND 17 MOLECULE: TEMPLATE RNA; COMPND 18 CHAIN: E SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: TRICHOPLUSIA NI; SOURCE 9 ORGANISM_TAXID: 7111; SOURCE 10 MOL_ID: 3; SOURCE 11 ORGANISM_SCIENTIFIC: TRICHOPLUSIA NI; SOURCE 12 ORGANISM_TAXID: 7111; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: TRICHOPLUSIA NI; SOURCE 15 ORGANISM_TAXID: 7111; SOURCE 16 MOL_ID: 5; SOURCE 17 ORGANISM_SCIENTIFIC: TRICHOPLUSIA NI; SOURCE 18 ORGANISM_TAXID: 7111 KEYWDS ENDONUCLEASE, REVERSE TRANSCRIPTASE, GENE REGULATION EXPDTA ELECTRON MICROSCOPY AUTHOR W.JIN,C.YU,R.M.XU REVDAT 1 22-OCT-25 9K6H 0 JRNL AUTH W.JIN,C.YU,Y.ZHANG,C.CAO,T.XIA,G.SONG,Z.CAI,Y.XUE,B.ZHU, JRNL AUTH 2 R.M.XU JRNL TITL MECHANISM OF DNA TARGETING BY HUMAN LINE-1. JRNL REF SCIENCE V. 390 U3433 2025 JRNL REFN ESSN 1095-9203 JRNL PMID 41066570 JRNL DOI 10.1126/SCIENCE.ADU3433 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.000 REMARK 3 NUMBER OF PARTICLES : 268644 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9K6H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1300052823. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HUMAN LINE-1 ORF2P WITH REMARK 245 ENDOGENOUS DNA AND RNA/CDNA REMARK 245 HYBRID BOUND TO DNTP AND MN2+; REMARK 245 HUMAN LINE-1 ORF2P; ENDOGENOUS REMARK 245 DNA AND RNA/CDNA HYBRID REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS TALOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 ILE A 8 REMARK 465 THR A 9 REMARK 465 ILE A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 LEU A 13 REMARK 465 ASN A 14 REMARK 465 ILE A 15 REMARK 465 ASN A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 ASN A 19 REMARK 465 SER A 20 REMARK 465 ALA A 21 REMARK 465 ILE A 22 REMARK 465 LYS A 23 REMARK 465 ARG A 24 REMARK 465 HIS A 25 REMARK 465 ARG A 26 REMARK 465 LEU A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 TRP A 30 REMARK 465 ILE A 31 REMARK 465 LYS A 32 REMARK 465 SER A 33 REMARK 465 GLN A 34 REMARK 465 ASP A 35 REMARK 465 PRO A 36 REMARK 465 SER A 37 REMARK 465 VAL A 38 REMARK 465 CYS A 39 REMARK 465 CYS A 40 REMARK 465 ILE A 41 REMARK 465 GLN A 42 REMARK 465 GLU A 43 REMARK 465 THR A 44 REMARK 465 HIS A 45 REMARK 465 LEU A 46 REMARK 465 THR A 47 REMARK 465 CYS A 48 REMARK 465 ARG A 49 REMARK 465 ASP A 50 REMARK 465 THR A 51 REMARK 465 HIS A 52 REMARK 465 ARG A 53 REMARK 465 LEU A 54 REMARK 465 LYS A 55 REMARK 465 ILE A 56 REMARK 465 LYS A 57 REMARK 465 GLY A 58 REMARK 465 TRP A 59 REMARK 465 ARG A 60 REMARK 465 LYS A 61 REMARK 465 ILE A 62 REMARK 465 TYR A 63 REMARK 465 GLN A 64 REMARK 465 ALA A 65 REMARK 465 ASN A 66 REMARK 465 GLY A 67 REMARK 465 LYS A 68 REMARK 465 GLN A 69 REMARK 465 LYS A 70 REMARK 465 LYS A 71 REMARK 465 ALA A 72 REMARK 465 GLY A 73 REMARK 465 VAL A 74 REMARK 465 ALA A 75 REMARK 465 ILE A 76 REMARK 465 LEU A 77 REMARK 465 VAL A 78 REMARK 465 SER A 79 REMARK 465 ASP A 80 REMARK 465 LYS A 81 REMARK 465 THR A 82 REMARK 465 ASP A 83 REMARK 465 PHE A 84 REMARK 465 LYS A 85 REMARK 465 PRO A 86 REMARK 465 THR A 87 REMARK 465 LYS A 88 REMARK 465 ILE A 89 REMARK 465 LYS A 90 REMARK 465 ARG A 91 REMARK 465 ASP A 92 REMARK 465 LYS A 93 REMARK 465 GLU A 94 REMARK 465 GLY A 95 REMARK 465 HIS A 96 REMARK 465 TYR A 97 REMARK 465 ILE A 98 REMARK 465 MET A 99 REMARK 465 VAL A 100 REMARK 465 LYS A 101 REMARK 465 GLY A 102 REMARK 465 SER A 103 REMARK 465 ILE A 104 REMARK 465 GLN A 105 REMARK 465 GLN A 106 REMARK 465 GLU A 107 REMARK 465 GLU A 108 REMARK 465 LEU A 109 REMARK 465 THR A 110 REMARK 465 ILE A 111 REMARK 465 LEU A 112 REMARK 465 ASN A 113 REMARK 465 ILE A 114 REMARK 465 TYR A 115 REMARK 465 ALA A 116 REMARK 465 PRO A 117 REMARK 465 ASN A 118 REMARK 465 THR A 119 REMARK 465 GLY A 120 REMARK 465 ALA A 121 REMARK 465 PRO A 122 REMARK 465 ARG A 123 REMARK 465 PHE A 124 REMARK 465 ILE A 125 REMARK 465 LYS A 126 REMARK 465 GLN A 127 REMARK 465 VAL A 128 REMARK 465 LEU A 129 REMARK 465 SER A 130 REMARK 465 ASP A 131 REMARK 465 LEU A 132 REMARK 465 GLN A 133 REMARK 465 ARG A 134 REMARK 465 ASP A 135 REMARK 465 LEU A 136 REMARK 465 ASP A 137 REMARK 465 SER A 138 REMARK 465 HIS A 139 REMARK 465 THR A 140 REMARK 465 LEU A 141 REMARK 465 ILE A 142 REMARK 465 MET A 143 REMARK 465 GLY A 144 REMARK 465 ASP A 145 REMARK 465 PHE A 146 REMARK 465 ASN A 147 REMARK 465 THR A 148 REMARK 465 PRO A 149 REMARK 465 LEU A 150 REMARK 465 SER A 151 REMARK 465 THR A 152 REMARK 465 LEU A 153 REMARK 465 ASP A 154 REMARK 465 ARG A 155 REMARK 465 SER A 156 REMARK 465 THR A 157 REMARK 465 ARG A 158 REMARK 465 GLN A 159 REMARK 465 LYS A 160 REMARK 465 VAL A 161 REMARK 465 ASN A 162 REMARK 465 LYS A 163 REMARK 465 ASP A 164 REMARK 465 THR A 165 REMARK 465 GLN A 166 REMARK 465 GLU A 167 REMARK 465 LEU A 168 REMARK 465 ASN A 169 REMARK 465 SER A 170 REMARK 465 ALA A 171 REMARK 465 LEU A 172 REMARK 465 HIS A 173 REMARK 465 GLN A 174 REMARK 465 ALA A 175 REMARK 465 ASP A 176 REMARK 465 LEU A 177 REMARK 465 ILE A 178 REMARK 465 ASP A 179 REMARK 465 ILE A 180 REMARK 465 TYR A 181 REMARK 465 ARG A 182 REMARK 465 THR A 183 REMARK 465 LEU A 184 REMARK 465 HIS A 185 REMARK 465 PRO A 186 REMARK 465 LYS A 187 REMARK 465 SER A 188 REMARK 465 THR A 189 REMARK 465 GLU A 190 REMARK 465 TYR A 191 REMARK 465 THR A 192 REMARK 465 PHE A 193 REMARK 465 PHE A 194 REMARK 465 SER A 195 REMARK 465 ALA A 196 REMARK 465 PRO A 197 REMARK 465 HIS A 198 REMARK 465 HIS A 199 REMARK 465 THR A 200 REMARK 465 TYR A 201 REMARK 465 SER A 202 REMARK 465 LYS A 203 REMARK 465 ILE A 204 REMARK 465 ASP A 205 REMARK 465 HIS A 206 REMARK 465 ILE A 207 REMARK 465 VAL A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 LYS A 211 REMARK 465 ALA A 212 REMARK 465 LEU A 213 REMARK 465 LEU A 214 REMARK 465 SER A 215 REMARK 465 LYS A 216 REMARK 465 CYS A 217 REMARK 465 LYS A 218 REMARK 465 ARG A 219 REMARK 465 THR A 220 REMARK 465 GLU A 221 REMARK 465 ILE A 222 REMARK 465 ILE A 223 REMARK 465 THR A 224 REMARK 465 ASN A 225 REMARK 465 TYR A 226 REMARK 465 LEU A 227 REMARK 465 SER A 228 REMARK 465 ASP A 229 REMARK 465 HIS A 230 REMARK 465 SER A 231 REMARK 465 ALA A 232 REMARK 465 ILE A 233 REMARK 465 LYS A 234 REMARK 465 LEU A 235 REMARK 465 GLU A 236 REMARK 465 LEU A 237 REMARK 465 ARG A 238 REMARK 465 ILE A 239 REMARK 465 LYS A 240 REMARK 465 ASN A 241 REMARK 465 LEU A 242 REMARK 465 THR A 243 REMARK 465 GLN A 244 REMARK 465 SER A 245 REMARK 465 ARG A 246 REMARK 465 SER A 247 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 484 31.80 -92.98 REMARK 500 ALA A 701 -118.90 58.94 REMARK 500 ASN A 710 72.81 52.63 REMARK 500 GLN A 863 -178.81 -69.71 REMARK 500 THR A 871 -159.65 46.53 REMARK 500 MET A 908 73.78 50.86 REMARK 500 GLN A 925 50.82 -92.18 REMARK 500 ARG A1132 -11.64 72.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 601 O REMARK 620 2 ASP A 702 OD2 82.3 REMARK 620 3 DTP A1301 O2G 77.6 159.1 REMARK 620 4 DTP A1301 O2B 84.8 98.7 85.2 REMARK 620 5 DTP A1301 O1A 175.4 94.7 105.8 92.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1130 SG REMARK 620 2 CYS A1134 SG 109.4 REMARK 620 3 HIS A1142 NE2 107.3 100.9 REMARK 620 4 CYS A1147 SG 113.7 112.4 112.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-62127 RELATED DB: EMDB REMARK 900 STRUCTURE OF HUMAN LINE-1 ORF2P WITH ENDOGENOUS DNA AND RNA/CDNA REMARK 900 HYBRID BOUND TO DNTP AND MN2+ DBREF 9K6H A 2 1275 UNP O00370 LORF2_HUMAN 2 1275 DBREF 9K6H B 1 20 PDB 9K6H 9K6H 1 20 DBREF 9K6H C 19 30 PDB 9K6H 9K6H 19 30 DBREF 9K6H D -35 -26 PDB 9K6H 9K6H -35 -26 DBREF 9K6H E 24 35 PDB 9K6H 9K6H 24 35 SEQADV 9K6H THR A 5 UNP O00370 ASN 5 VARIANT SEQADV 9K6H ILE A 15 UNP O00370 VAL 15 VARIANT SEQADV 9K6H ALA A 21 UNP O00370 PRO 21 VARIANT SEQADV 9K6H THR A 152 UNP O00370 ILE 152 VARIANT SEQADV 9K6H ALA A 175 UNP O00370 THR 175 VARIANT SEQADV 9K6H MET A 595 UNP O00370 VAL 595 VARIANT SEQADV 9K6H THR A 625 UNP O00370 MET 625 VARIANT SEQADV 9K6H PHE A 627 UNP O00370 LEU 627 VARIANT SEQADV 9K6H THR A 744 UNP O00370 ASN 744 VARIANT SEQADV 9K6H GLU A 795 UNP O00370 ASP 795 VARIANT SEQADV 9K6H PHE A 932 UNP O00370 LEU 932 VARIANT SEQADV 9K6H LEU A 1141 UNP O00370 VAL 1141 VARIANT SEQADV 9K6H ASN A 1182 UNP O00370 LYS 1182 VARIANT SEQADV 9K6H GLU A 1183 UNP O00370 ASP 1183 VARIANT SEQADV 9K6H LYS A 1212 UNP O00370 ASN 1212 VARIANT SEQRES 1 A 1274 THR GLY SER THR SER HIS ILE THR ILE LEU THR LEU ASN SEQRES 2 A 1274 ILE ASN GLY LEU ASN SER ALA ILE LYS ARG HIS ARG LEU SEQRES 3 A 1274 ALA SER TRP ILE LYS SER GLN ASP PRO SER VAL CYS CYS SEQRES 4 A 1274 ILE GLN GLU THR HIS LEU THR CYS ARG ASP THR HIS ARG SEQRES 5 A 1274 LEU LYS ILE LYS GLY TRP ARG LYS ILE TYR GLN ALA ASN SEQRES 6 A 1274 GLY LYS GLN LYS LYS ALA GLY VAL ALA ILE LEU VAL SER SEQRES 7 A 1274 ASP LYS THR ASP PHE LYS PRO THR LYS ILE LYS ARG ASP SEQRES 8 A 1274 LYS GLU GLY HIS TYR ILE MET VAL LYS GLY SER ILE GLN SEQRES 9 A 1274 GLN GLU GLU LEU THR ILE LEU ASN ILE TYR ALA PRO ASN SEQRES 10 A 1274 THR GLY ALA PRO ARG PHE ILE LYS GLN VAL LEU SER ASP SEQRES 11 A 1274 LEU GLN ARG ASP LEU ASP SER HIS THR LEU ILE MET GLY SEQRES 12 A 1274 ASP PHE ASN THR PRO LEU SER THR LEU ASP ARG SER THR SEQRES 13 A 1274 ARG GLN LYS VAL ASN LYS ASP THR GLN GLU LEU ASN SER SEQRES 14 A 1274 ALA LEU HIS GLN ALA ASP LEU ILE ASP ILE TYR ARG THR SEQRES 15 A 1274 LEU HIS PRO LYS SER THR GLU TYR THR PHE PHE SER ALA SEQRES 16 A 1274 PRO HIS HIS THR TYR SER LYS ILE ASP HIS ILE VAL GLY SEQRES 17 A 1274 SER LYS ALA LEU LEU SER LYS CYS LYS ARG THR GLU ILE SEQRES 18 A 1274 ILE THR ASN TYR LEU SER ASP HIS SER ALA ILE LYS LEU SEQRES 19 A 1274 GLU LEU ARG ILE LYS ASN LEU THR GLN SER ARG SER THR SEQRES 20 A 1274 THR TRP LYS LEU ASN ASN LEU LEU LEU ASN ASP TYR TRP SEQRES 21 A 1274 VAL HIS ASN GLU MET LYS ALA GLU ILE LYS MET PHE PHE SEQRES 22 A 1274 GLU THR ASN GLU ASN LYS ASP THR THR TYR GLN ASN LEU SEQRES 23 A 1274 TRP ASP ALA PHE LYS ALA VAL CYS ARG GLY LYS PHE ILE SEQRES 24 A 1274 ALA LEU ASN ALA TYR LYS ARG LYS GLN GLU ARG SER LYS SEQRES 25 A 1274 ILE ASP THR LEU THR SER GLN LEU LYS GLU LEU GLU LYS SEQRES 26 A 1274 GLN GLU GLN THR HIS SER LYS ALA SER ARG ARG GLN GLU SEQRES 27 A 1274 ILE THR LYS ILE ARG ALA GLU LEU LYS GLU ILE GLU THR SEQRES 28 A 1274 GLN LYS THR LEU GLN LYS ILE ASN GLU SER ARG SER TRP SEQRES 29 A 1274 PHE PHE GLU ARG ILE ASN LYS ILE ASP ARG PRO LEU ALA SEQRES 30 A 1274 ARG LEU ILE LYS LYS LYS ARG GLU LYS ASN GLN ILE ASP SEQRES 31 A 1274 THR ILE LYS ASN ASP LYS GLY ASP ILE THR THR ASP PRO SEQRES 32 A 1274 THR GLU ILE GLN THR THR ILE ARG GLU TYR TYR LYS HIS SEQRES 33 A 1274 LEU TYR ALA ASN LYS LEU GLU ASN LEU GLU GLU MET ASP SEQRES 34 A 1274 THR PHE LEU ASP THR TYR THR LEU PRO ARG LEU ASN GLN SEQRES 35 A 1274 GLU GLU VAL GLU SER LEU ASN ARG PRO ILE THR GLY SER SEQRES 36 A 1274 GLU ILE VAL ALA ILE ILE ASN SER LEU PRO THR LYS LYS SEQRES 37 A 1274 SER PRO GLY PRO ASP GLY PHE THR ALA GLU PHE TYR GLN SEQRES 38 A 1274 ARG TYR LYS GLU GLU LEU VAL PRO PHE LEU LEU LYS LEU SEQRES 39 A 1274 PHE GLN SER ILE GLU LYS GLU GLY ILE LEU PRO ASN SER SEQRES 40 A 1274 PHE TYR GLU ALA SER ILE ILE LEU ILE PRO LYS PRO GLY SEQRES 41 A 1274 ARG ASP THR THR LYS LYS GLU ASN PHE ARG PRO ILE SER SEQRES 42 A 1274 LEU MET ASN ILE ASP ALA LYS ILE LEU ASN LYS ILE LEU SEQRES 43 A 1274 ALA ASN ARG ILE GLN GLN HIS ILE LYS LYS LEU ILE HIS SEQRES 44 A 1274 HIS ASP GLN VAL GLY PHE ILE PRO GLY MET GLN GLY TRP SEQRES 45 A 1274 PHE ASN ILE ARG LYS SER ILE ASN VAL ILE GLN HIS ILE SEQRES 46 A 1274 ASN ARG ALA LYS ASP LYS ASN HIS MET ILE ILE SER ILE SEQRES 47 A 1274 ASP ALA GLU LYS ALA PHE ASP LYS ILE GLN GLN PRO PHE SEQRES 48 A 1274 MET LEU LYS THR LEU ASN LYS LEU GLY ILE ASP GLY THR SEQRES 49 A 1274 TYR PHE LYS ILE ILE ARG ALA ILE TYR ASP LYS PRO THR SEQRES 50 A 1274 ALA ASN ILE ILE LEU ASN GLY GLN LYS LEU GLU ALA PHE SEQRES 51 A 1274 PRO LEU LYS THR GLY THR ARG GLN GLY CYS PRO LEU SER SEQRES 52 A 1274 PRO LEU LEU PHE ASN ILE VAL LEU GLU VAL LEU ALA ARG SEQRES 53 A 1274 ALA ILE ARG GLN GLU LYS GLU ILE LYS GLY ILE GLN LEU SEQRES 54 A 1274 GLY LYS GLU GLU VAL LYS LEU SER LEU PHE ALA ASP ASP SEQRES 55 A 1274 MET ILE VAL TYR LEU GLU ASN PRO ILE VAL SER ALA GLN SEQRES 56 A 1274 ASN LEU LEU LYS LEU ILE SER ASN PHE SER LYS VAL SER SEQRES 57 A 1274 GLY TYR LYS ILE ASN VAL GLN LYS SER GLN ALA PHE LEU SEQRES 58 A 1274 TYR THR ASN ASN ARG GLN THR GLU SER GLN ILE MET GLY SEQRES 59 A 1274 GLU LEU PRO PHE THR ILE ALA SER LYS ARG ILE LYS TYR SEQRES 60 A 1274 LEU GLY ILE GLN LEU THR ARG ASP VAL LYS ASP LEU PHE SEQRES 61 A 1274 LYS GLU ASN TYR LYS PRO LEU LEU LYS GLU ILE LYS GLU SEQRES 62 A 1274 GLU THR ASN LYS TRP LYS ASN ILE PRO CYS SER TRP VAL SEQRES 63 A 1274 GLY ARG ILE ASN ILE VAL LYS MET ALA ILE LEU PRO LYS SEQRES 64 A 1274 VAL ILE TYR ARG PHE ASN ALA ILE PRO ILE LYS LEU PRO SEQRES 65 A 1274 MET THR PHE PHE THR GLU LEU GLU LYS THR THR LEU LYS SEQRES 66 A 1274 PHE ILE TRP ASN GLN LYS ARG ALA ARG ILE ALA LYS SER SEQRES 67 A 1274 ILE LEU SER GLN LYS ASN LYS ALA GLY GLY ILE THR LEU SEQRES 68 A 1274 PRO ASP PHE LYS LEU TYR TYR LYS ALA THR VAL THR LYS SEQRES 69 A 1274 THR ALA TRP TYR TRP TYR GLN ASN ARG ASP ILE ASP GLN SEQRES 70 A 1274 TRP ASN ARG THR GLU PRO SER GLU ILE MET PRO HIS ILE SEQRES 71 A 1274 TYR ASN TYR LEU ILE PHE ASP LYS PRO GLU LYS ASN LYS SEQRES 72 A 1274 GLN TRP GLY LYS ASP SER LEU PHE ASN LYS TRP CYS TRP SEQRES 73 A 1274 GLU ASN TRP LEU ALA ILE CYS ARG LYS LEU LYS LEU ASP SEQRES 74 A 1274 PRO PHE LEU THR PRO TYR THR LYS ILE ASN SER ARG TRP SEQRES 75 A 1274 ILE LYS ASP LEU ASN VAL LYS PRO LYS THR ILE LYS THR SEQRES 76 A 1274 LEU GLU GLU ASN LEU GLY ILE THR ILE GLN ASP ILE GLY SEQRES 77 A 1274 VAL GLY LYS ASP PHE MET SER LYS THR PRO LYS ALA MET SEQRES 78 A 1274 ALA THR LYS ASP LYS ILE ASP LYS TRP ASP LEU ILE LYS SEQRES 79 A 1274 LEU LYS SER PHE CYS THR ALA LYS GLU THR THR ILE ARG SEQRES 80 A 1274 VAL ASN ARG GLN PRO THR THR TRP GLU LYS ILE PHE ALA SEQRES 81 A 1274 THR TYR SER SER ASP LYS GLY LEU ILE SER ARG ILE TYR SEQRES 82 A 1274 ASN GLU LEU LYS GLN ILE TYR LYS LYS LYS THR ASN ASN SEQRES 83 A 1274 PRO ILE LYS LYS TRP ALA LYS ASP MET ASN ARG HIS PHE SEQRES 84 A 1274 SER LYS GLU ASP ILE TYR ALA ALA LYS LYS HIS MET LYS SEQRES 85 A 1274 LYS CYS SER SER SER LEU ALA ILE ARG GLU MET GLN ILE SEQRES 86 A 1274 LYS THR THR MET ARG TYR HIS LEU THR PRO VAL ARG MET SEQRES 87 A 1274 ALA ILE ILE LYS LYS SER GLY ASN ASN ARG CYS TRP ARG SEQRES 88 A 1274 GLY CYS GLY GLU ILE GLY THR LEU LEU HIS CYS TRP TRP SEQRES 89 A 1274 ASP CYS LYS LEU VAL GLN PRO LEU TRP LYS SER VAL TRP SEQRES 90 A 1274 ARG PHE LEU ARG ASP LEU GLU LEU GLU ILE PRO PHE ASP SEQRES 91 A 1274 PRO ALA ILE PRO LEU LEU GLY ILE TYR PRO ASN GLU TYR SEQRES 92 A 1274 LYS SER CYS CYS TYR LYS ASP THR CYS THR ARG MET PHE SEQRES 93 A 1274 ILE ALA ALA LEU PHE THR ILE ALA LYS THR TRP ASN GLN SEQRES 94 A 1274 PRO LYS CYS PRO THR MET ILE ASP TRP ILE LYS LYS MET SEQRES 95 A 1274 TRP HIS ILE TYR THR MET GLU TYR TYR ALA ALA ILE LYS SEQRES 96 A 1274 ASN ASP GLU PHE ILE SER PHE VAL GLY THR TRP MET LYS SEQRES 97 A 1274 LEU GLU THR ILE ILE LEU SER LYS LEU SER GLN GLU GLN SEQRES 98 A 1274 LYS THR LYS HIS ARG ILE PHE SER LEU ILE GLY GLY ASN SEQRES 1 B 20 DA DA DA DA DA DA DA DA DA DA DA DA DC SEQRES 2 B 20 DC DC DC DC DC DC DC SEQRES 1 C 12 DT DT DT DT DT DT DT DT DT DT DT DT SEQRES 1 D 10 DA DA DA DA DA DA DA DA DA DA SEQRES 1 E 12 U U U U U U U U U U U U HET DTP A1301 30 HET ZN A1302 1 HET MN A1303 1 HETNAM DTP 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE HETNAM ZN ZINC ION HETNAM MN MANGANESE (II) ION FORMUL 6 DTP C10 H16 N5 O12 P3 FORMUL 7 ZN ZN 2+ FORMUL 8 MN MN 2+ HELIX 1 AA1 ASN A 253 ASN A 258 1 6 HELIX 2 AA2 ASP A 259 ASN A 277 1 19 HELIX 3 AA3 THR A 283 ARG A 311 1 29 HELIX 4 AA4 ARG A 311 HIS A 331 1 21 HELIX 5 AA5 LYS A 333 ARG A 369 1 37 HELIX 6 AA6 ASP A 374 LYS A 382 1 9 HELIX 7 AA7 ASP A 403 TYR A 419 1 17 HELIX 8 AA8 ASN A 425 TYR A 436 1 12 HELIX 9 AA9 ASN A 442 ASN A 450 1 9 HELIX 10 AB1 THR A 454 LEU A 465 1 12 HELIX 11 AB2 THR A 477 TYR A 484 1 8 HELIX 12 AB3 TYR A 484 GLY A 503 1 20 HELIX 13 AB4 PRO A 506 PHE A 509 5 4 HELIX 14 AB5 LYS A 526 GLU A 528 5 3 HELIX 15 AB6 ASN A 537 GLN A 553 1 17 HELIX 16 AB7 HIS A 554 ILE A 559 1 6 HELIX 17 AB8 GLY A 572 ALA A 589 1 18 HELIX 18 AB9 GLN A 609 LEU A 620 1 12 HELIX 19 AC1 GLY A 624 TYR A 634 1 11 HELIX 20 AC2 LEU A 663 GLU A 682 1 20 HELIX 21 AC3 ASN A 710 GLY A 730 1 21 HELIX 22 AC4 ASN A 746 LEU A 757 1 12 HELIX 23 AC5 ASP A 776 LYS A 778 5 3 HELIX 24 AC6 ASP A 779 TYR A 785 1 7 HELIX 25 AC7 TYR A 785 LYS A 800 1 16 HELIX 26 AC8 SER A 805 ALA A 816 1 12 HELIX 27 AC9 ALA A 816 ILE A 828 1 13 HELIX 28 AD1 PRO A 833 TRP A 849 1 17 HELIX 29 AD2 ALA A 857 SER A 862 1 6 HELIX 30 AD3 ASP A 874 LYS A 885 1 12 HELIX 31 AD4 LYS A 885 ASN A 893 1 9 HELIX 32 AD5 ASP A 897 THR A 902 1 6 HELIX 33 AD6 ILE A 911 LEU A 915 5 5 HELIX 34 AD7 PHE A 932 LEU A 947 1 16 HELIX 35 AD8 SER A 961 ASP A 966 1 6 HELIX 36 AD9 LYS A 970 LEU A 981 1 12 HELIX 37 AE1 THR A 984 GLY A 989 1 6 HELIX 38 AE2 VAL A 990 PHE A 994 5 5 HELIX 39 AE3 THR A 998 ASP A 1006 1 9 HELIX 40 AE4 ASP A 1009 THR A 1021 1 13 HELIX 41 AE5 ALA A 1022 ASN A 1030 1 9 HELIX 42 AE6 THR A 1034 THR A 1042 1 9 HELIX 43 AE7 GLY A 1048 TYR A 1061 1 14 HELIX 44 AE8 ASN A 1067 MET A 1076 1 10 HELIX 45 AE9 SER A 1081 CYS A 1095 1 15 HELIX 46 AF1 SER A 1098 MET A 1110 1 13 HELIX 47 AF2 THR A 1115 LYS A 1123 1 9 HELIX 48 AF3 THR A 1139 TRP A 1145 1 7 HELIX 49 AF4 VAL A 1150 ASP A 1163 1 14 HELIX 50 AF5 PRO A 1172 GLY A 1178 1 7 HELIX 51 AF6 TYR A 1189 THR A 1207 1 19 HELIX 52 AF7 THR A 1215 ASP A 1238 1 24 HELIX 53 AF8 GLU A 1239 LYS A 1257 1 19 HELIX 54 AF9 SER A 1259 ARG A 1267 1 9 SHEET 1 AA1 2 ILE A 393 LYS A 394 0 SHEET 2 AA1 2 ILE A 400 THR A 401 -1 O THR A 401 N ILE A 393 SHEET 1 AA2 4 PHE A 530 LEU A 535 0 SHEET 2 AA2 4 GLU A 511 PRO A 518 -1 N ILE A 517 O ARG A 531 SHEET 3 AA2 4 THR A 638 LEU A 643 1 O ILE A 642 N ILE A 514 SHEET 4 AA2 4 GLN A 646 LYS A 647 -1 O GLN A 646 N LEU A 643 SHEET 1 AA3 4 PHE A 530 LEU A 535 0 SHEET 2 AA3 4 GLU A 511 PRO A 518 -1 N ILE A 517 O ARG A 531 SHEET 3 AA3 4 THR A 638 LEU A 643 1 O ILE A 642 N ILE A 514 SHEET 4 AA3 4 PHE A 651 PRO A 652 -1 O PHE A 651 N ALA A 639 SHEET 1 AA4 5 LEU A 697 PHE A 700 0 SHEET 2 AA4 5 ASP A 703 GLU A 709 -1 O ILE A 705 N SER A 698 SHEET 3 AA4 5 ASN A 593 ASP A 600 -1 N ILE A 599 O MET A 704 SHEET 4 AA4 5 GLN A 739 THR A 744 -1 O TYR A 743 N HIS A 594 SHEET 5 AA4 5 THR A 760 ILE A 761 1 O THR A 760 N ALA A 740 SHEET 1 AA5 2 ILE A 688 LEU A 690 0 SHEET 2 AA5 2 GLU A 693 VAL A 695 -1 O VAL A 695 N ILE A 688 SHEET 1 AA6 2 ARG A 765 TYR A 768 0 SHEET 2 AA6 2 ILE A 771 THR A 774 -1 O ILE A 771 N TYR A 768 LINK O ALA A 601 MN MN A1303 1555 1555 2.13 LINK OD2 ASP A 702 MN MN A1303 1555 1555 2.17 LINK SG CYS A1130 ZN ZN A1302 1555 1555 2.31 LINK SG CYS A1134 ZN ZN A1302 1555 1555 2.31 LINK NE2 HIS A1142 ZN ZN A1302 1555 1555 2.07 LINK SG CYS A1147 ZN ZN A1302 1555 1555 2.32 LINK O2G DTP A1301 MN MN A1303 1555 1555 2.60 LINK O2B DTP A1301 MN MN A1303 1555 1555 2.19 LINK O1A DTP A1301 MN MN A1303 1555 1555 2.19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 8526 ASN A1275 TER 8931 DC B 20 TER 9172 DT C 30 TER 9383 DA D -26 TER 9624 U E 35 HETATM 9625 PG DTP A1301 207.323 183.459 213.774 1.00 56.91 P HETATM 9626 O1G DTP A1301 208.384 182.683 214.476 1.00 43.33 O HETATM 9627 O2G DTP A1301 207.039 184.829 214.394 1.00 35.70 O HETATM 9628 O3G DTP A1301 207.582 183.635 212.275 1.00 54.55 O HETATM 9629 PB DTP A1301 204.381 182.980 213.720 1.00 35.36 P HETATM 9630 O1B DTP A1301 203.633 181.725 213.527 1.00 26.82 O HETATM 9631 O2B DTP A1301 203.984 183.843 214.913 1.00 37.40 O HETATM 9632 O3B DTP A1301 205.932 182.692 213.852 1.00 39.45 O HETATM 9633 PA DTP A1301 203.574 185.266 212.012 1.00 48.54 P HETATM 9634 O1A DTP A1301 203.816 186.343 212.994 1.00 38.88 O HETATM 9635 O2A DTP A1301 204.009 185.592 210.584 1.00 37.53 O HETATM 9636 O3A DTP A1301 204.320 183.918 212.435 1.00 38.54 O HETATM 9637 O5' DTP A1301 202.049 184.859 211.972 1.00 33.43 O HETATM 9638 C5' DTP A1301 201.240 184.861 213.167 1.00 30.17 C HETATM 9639 C4' DTP A1301 200.153 183.828 213.020 1.00 23.92 C HETATM 9640 O4' DTP A1301 199.504 183.992 211.744 1.00 19.90 O HETATM 9641 C3' DTP A1301 200.652 182.391 213.027 1.00 23.57 C HETATM 9642 O3' DTP A1301 200.708 181.888 214.361 1.00 27.05 O HETATM 9643 C2' DTP A1301 199.581 181.670 212.221 1.00 20.84 C HETATM 9644 C1' DTP A1301 199.083 182.730 211.247 1.00 17.52 C HETATM 9645 N9 DTP A1301 199.595 182.582 209.893 1.00 17.29 N HETATM 9646 C8 DTP A1301 200.584 183.312 209.288 1.00 22.70 C HETATM 9647 N7 DTP A1301 200.841 182.947 208.056 1.00 20.46 N HETATM 9648 C5 DTP A1301 199.962 181.897 207.836 1.00 22.51 C HETATM 9649 C6 DTP A1301 199.730 181.071 206.721 1.00 26.03 C HETATM 9650 N6 DTP A1301 200.393 181.176 205.565 1.00 26.40 N HETATM 9651 N1 DTP A1301 198.779 180.118 206.833 1.00 23.61 N HETATM 9652 C2 DTP A1301 198.112 180.006 207.985 1.00 23.86 C HETATM 9653 N3 DTP A1301 198.243 180.726 209.100 1.00 22.92 N HETATM 9654 C4 DTP A1301 199.189 181.661 208.961 1.00 21.05 C HETATM 9655 ZN ZN A1302 198.775 192.467 148.398 1.00 85.07 ZN HETATM 9656 MN MN A1303 204.732 185.896 214.933 1.00 34.04 MN CONECT 2944 9656 CONECT 3748 9656 CONECT 7311 9655 CONECT 7346 9655 CONECT 7404 9655 CONECT 7452 9655 CONECT 9625 9626 9627 9628 9632 CONECT 9626 9625 CONECT 9627 9625 9656 CONECT 9628 9625 CONECT 9629 9630 9631 9632 9636 CONECT 9630 9629 CONECT 9631 9629 9656 CONECT 9632 9625 9629 CONECT 9633 9634 9635 9636 9637 CONECT 9634 9633 9656 CONECT 9635 9633 CONECT 9636 9629 9633 CONECT 9637 9633 9638 CONECT 9638 9637 9639 CONECT 9639 9638 9640 9641 CONECT 9640 9639 9644 CONECT 9641 9639 9642 9643 CONECT 9642 9641 CONECT 9643 9641 9644 CONECT 9644 9640 9643 9645 CONECT 9645 9644 9646 9654 CONECT 9646 9645 9647 CONECT 9647 9646 9648 CONECT 9648 9647 9649 9654 CONECT 9649 9648 9650 9651 CONECT 9650 9649 CONECT 9651 9649 9652 CONECT 9652 9651 9653 CONECT 9653 9652 9654 CONECT 9654 9645 9648 9653 CONECT 9655 7311 7346 7404 7452 CONECT 9656 2944 3748 9627 9631 CONECT 9656 9634 MASTER 403 0 3 54 19 0 0 6 9651 5 39 103 END