HEADER HYDROLASE 23-OCT-24 9K7I TITLE GAMMA-GLUTAMYL PEPTIDASE 1 FROM ARABIDOPSIS THALIANA (GLU COMPLEX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-GLUTAMYL PEPTIDASE 1; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.19.16; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: GGP1, AT4G30530; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PDEST-17 KEYWDS PEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SONE,T.KASHIMA,A.MIYANAGA,S.FUSHINOBU REVDAT 1 29-OCT-25 9K7I 0 JRNL AUTH K.SONE,T.ITO,C.YAMADA,T.KASHIMA,A.MIYANAGA,N.OHKAMA-OHTSU, JRNL AUTH 2 S.FUSHINOBU JRNL TITL CRYSTAL STRUCTURES OF GAMMA-GLUTAMYL PEPTIDASE 1 FROM JRNL TITL 2 ARABIDOPSIS THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.ITO,T.KITAIWA,K.NISHIZONO,M.UMAHASHI,S.MIYAJI,S.I.AGAKE, REMARK 1 AUTH 2 K.KUWAHARA,T.YOKOYAMA,S.FUSHINOBU,A.MARUYAMA-NAKASHITA, REMARK 1 AUTH 3 R.SUGIYAMA,M.SATO,J.INABA,M.Y.HIRAI,N.OHKAMA-OHTSU REMARK 1 TITL GLUTATHIONE DEGRADATION ACTIVITY OF GAMMA-GLUTAMYL PEPTIDASE REMARK 1 TITL 2 1 MANIFESTS ITS DUAL ROLES IN PRIMARY AND SECONDARY SULFUR REMARK 1 TITL 3 METABOLISM IN ARABIDOPSIS. REMARK 1 REF PLANT J. 2022 REMARK 1 REFN ESSN 1365-313X REMARK 1 PMID 35932489 REMARK 1 DOI 10.1111/TPJ.15912 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2890 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3999 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2640 REMARK 3 BIN FREE R VALUE SET COUNT : 218 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3948 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 466 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.28 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : 0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.261 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.956 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4080 ; 0.015 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3857 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5491 ; 2.340 ; 1.836 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8923 ; 0.805 ; 1.787 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 6.131 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 18 ;13.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 738 ;14.425 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 591 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4717 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 907 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1988 ; 2.455 ; 1.858 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1985 ; 2.434 ; 1.856 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2476 ; 3.299 ; 3.309 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2477 ; 3.298 ; 3.309 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2092 ; 4.743 ; 2.465 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2091 ; 4.742 ; 2.466 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3013 ; 7.171 ; 4.208 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4787 ; 8.198 ;24.930 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4788 ; 8.197 ;24.930 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 9K7I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-OCT-24. REMARK 100 THE DEPOSITION ID IS D_1300052759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : A LIQUID NITROGEN-COOLED SI REMARK 200 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58231 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 46.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 1.600 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, SODIUM DIHYDROGEN REMARK 280 PHSOPHATE, DI-POTASSIUM HYDROGEN PHSOPHATE, GLUTAMATE, PH 4.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.14450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.38600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.90800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.38600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.14450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.90800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 SER A -8 REMARK 465 TYR A -7 REMARK 465 TYR A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 PRO A 248 REMARK 465 THR A 249 REMARK 465 ASN A 250 REMARK 465 MET B -9 REMARK 465 SER B -8 REMARK 465 TYR B -7 REMARK 465 TYR B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 198 CD GLU A 198 OE1 0.093 REMARK 500 GLU B 198 CD GLU B 198 OE1 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 6 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 6 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 TYR A 140 CB - CA - C ANGL. DEV. = 28.7 DEGREES REMARK 500 TYR A 140 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 TYR A 212 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 228 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 MET B 92 CG - SD - CE ANGL. DEV. = -11.5 DEGREES REMARK 500 TYR B 140 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU B 162 CB - CG - CD2 ANGL. DEV. = 12.9 DEGREES REMARK 500 LEU B 243 CB - CG - CD2 ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 100 -104.21 63.95 REMARK 500 SER A 139 -158.21 -83.60 REMARK 500 CYS A 154 79.01 -155.83 REMARK 500 GLU A 183 -139.54 48.27 REMARK 500 CYS B 100 -102.34 54.90 REMARK 500 LEU B 123 86.84 -150.92 REMARK 500 SER B 139 -147.89 -87.04 REMARK 500 CYS B 154 87.93 -152.73 REMARK 500 GLU B 183 -143.45 51.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 6 0.22 SIDE CHAIN REMARK 500 ARG A 232 0.09 SIDE CHAIN REMARK 500 ARG B 206 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 TYR A 140 -10.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 654 DISTANCE = 6.25 ANGSTROMS DBREF 9K7I A 1 250 UNP Q9M0A7 GGP1_ARATH 1 250 DBREF 9K7I B 1 250 UNP Q9M0A7 GGP1_ARATH 1 250 SEQADV 9K7I MET A -9 UNP Q9M0A7 INITIATING METHIONINE SEQADV 9K7I SER A -8 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I TYR A -7 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I TYR A -6 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS A -5 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS A -4 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS A -3 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS A -2 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS A -1 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS A 0 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I MET B -9 UNP Q9M0A7 INITIATING METHIONINE SEQADV 9K7I SER B -8 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I TYR B -7 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I TYR B -6 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS B -5 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS B -4 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS B -3 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS B -2 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS B -1 UNP Q9M0A7 EXPRESSION TAG SEQADV 9K7I HIS B 0 UNP Q9M0A7 EXPRESSION TAG SEQRES 1 A 260 MET SER TYR TYR HIS HIS HIS HIS HIS HIS MET VAL GLU SEQRES 2 A 260 GLN LYS ARG TYR ALA LEU PHE LEU ALA THR LEU ASP SER SEQRES 3 A 260 GLU PHE VAL LYS LYS THR TYR GLY GLY TYR HIS ASN VAL SEQRES 4 A 260 PHE VAL THR THR PHE GLY ASP GLU GLY GLU HIS TRP ASP SEQRES 5 A 260 SER PHE ARG VAL VAL SER GLY GLU PHE PRO ASP GLU LYS SEQRES 6 A 260 ASP LEU GLU LYS TYR ASP GLY PHE VAL ILE SER GLY SER SEQRES 7 A 260 SER HIS ASP ALA PHE GLU ASN ASP ASP TRP ILE LEU LYS SEQRES 8 A 260 LEU CYS ASP ILE VAL LYS LYS ILE ASP GLU MET LYS LYS SEQRES 9 A 260 LYS ILE LEU GLY ILE CYS PHE GLY HIS GLN ILE ILE ALA SEQRES 10 A 260 ARG VAL ARG GLY GLY THR VAL GLY ARG ALA LYS LYS GLY SEQRES 11 A 260 PRO GLU LEU LYS LEU GLY ASP ILE THR ILE VAL LYS ASP SEQRES 12 A 260 ALA ILE THR PRO GLY SER TYR PHE GLY ASN GLU ILE PRO SEQRES 13 A 260 ASP SER ILE ALA ILE ILE LYS CYS HIS GLN ASP GLU VAL SEQRES 14 A 260 LEU VAL LEU PRO GLU THR ALA LYS VAL LEU ALA TYR SER SEQRES 15 A 260 LYS ASN TYR GLU VAL GLU MET TYR SER ILE GLU ASP HIS SEQRES 16 A 260 LEU PHE CYS ILE GLN GLY HIS PRO GLU TYR ASN LYS GLU SEQRES 17 A 260 ILE LEU PHE GLU ILE VAL ASP ARG VAL LEU ALA LEU GLY SEQRES 18 A 260 TYR VAL LYS GLN GLU PHE ALA ASP ALA ALA LYS ALA THR SEQRES 19 A 260 MET GLU ASN ARG GLY ALA ASP ARG LYS LEU TRP GLU THR SEQRES 20 A 260 ILE CYS LYS ASN PHE LEU LYS GLY ARG VAL PRO THR ASN SEQRES 1 B 260 MET SER TYR TYR HIS HIS HIS HIS HIS HIS MET VAL GLU SEQRES 2 B 260 GLN LYS ARG TYR ALA LEU PHE LEU ALA THR LEU ASP SER SEQRES 3 B 260 GLU PHE VAL LYS LYS THR TYR GLY GLY TYR HIS ASN VAL SEQRES 4 B 260 PHE VAL THR THR PHE GLY ASP GLU GLY GLU HIS TRP ASP SEQRES 5 B 260 SER PHE ARG VAL VAL SER GLY GLU PHE PRO ASP GLU LYS SEQRES 6 B 260 ASP LEU GLU LYS TYR ASP GLY PHE VAL ILE SER GLY SER SEQRES 7 B 260 SER HIS ASP ALA PHE GLU ASN ASP ASP TRP ILE LEU LYS SEQRES 8 B 260 LEU CYS ASP ILE VAL LYS LYS ILE ASP GLU MET LYS LYS SEQRES 9 B 260 LYS ILE LEU GLY ILE CYS PHE GLY HIS GLN ILE ILE ALA SEQRES 10 B 260 ARG VAL ARG GLY GLY THR VAL GLY ARG ALA LYS LYS GLY SEQRES 11 B 260 PRO GLU LEU LYS LEU GLY ASP ILE THR ILE VAL LYS ASP SEQRES 12 B 260 ALA ILE THR PRO GLY SER TYR PHE GLY ASN GLU ILE PRO SEQRES 13 B 260 ASP SER ILE ALA ILE ILE LYS CYS HIS GLN ASP GLU VAL SEQRES 14 B 260 LEU VAL LEU PRO GLU THR ALA LYS VAL LEU ALA TYR SER SEQRES 15 B 260 LYS ASN TYR GLU VAL GLU MET TYR SER ILE GLU ASP HIS SEQRES 16 B 260 LEU PHE CYS ILE GLN GLY HIS PRO GLU TYR ASN LYS GLU SEQRES 17 B 260 ILE LEU PHE GLU ILE VAL ASP ARG VAL LEU ALA LEU GLY SEQRES 18 B 260 TYR VAL LYS GLN GLU PHE ALA ASP ALA ALA LYS ALA THR SEQRES 19 B 260 MET GLU ASN ARG GLY ALA ASP ARG LYS LEU TRP GLU THR SEQRES 20 B 260 ILE CYS LYS ASN PHE LEU LYS GLY ARG VAL PRO THR ASN HET GLU A 301 10 HET ACT A 302 4 HET ACT A 303 4 HET GOL A 304 6 HET GLU B 301 10 HET ACT B 302 4 HETNAM GLU GLUTAMIC ACID HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GLU 2(C5 H9 N O4) FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 6 GOL C3 H8 O3 FORMUL 9 HOH *466(H2 O) HELIX 1 AA1 SER A 16 GLY A 24 1 9 HELIX 2 AA2 GLY A 25 GLY A 35 1 11 HELIX 3 AA3 ARG A 45 GLY A 49 5 5 HELIX 4 AA4 ASP A 53 TYR A 60 5 8 HELIX 5 AA5 ASP A 76 MET A 92 1 17 HELIX 6 AA6 CYS A 100 ARG A 110 1 11 HELIX 7 AA7 LYS A 132 ILE A 135 5 4 HELIX 8 AA8 ASN A 196 LEU A 210 1 15 HELIX 9 AA9 LYS A 214 THR A 224 1 11 HELIX 10 AB1 ASP A 231 LYS A 244 1 14 HELIX 11 AB2 SER B 16 GLY B 24 1 9 HELIX 12 AB3 GLY B 25 GLY B 35 1 11 HELIX 13 AB4 ARG B 45 GLY B 49 5 5 HELIX 14 AB5 ASP B 53 TYR B 60 5 8 HELIX 15 AB6 ASP B 76 MET B 92 1 17 HELIX 16 AB7 CYS B 100 ARG B 110 1 11 HELIX 17 AB8 LYS B 132 ILE B 135 5 4 HELIX 18 AB9 ASN B 196 LEU B 210 1 15 HELIX 19 AC1 LYS B 214 THR B 224 1 11 HELIX 20 AC2 ASP B 231 LYS B 244 1 14 SHEET 1 AA1 9 HIS A 40 PHE A 44 0 SHEET 2 AA1 9 ARG A 6 PHE A 10 1 N TYR A 7 O HIS A 40 SHEET 3 AA1 9 GLY A 62 ILE A 65 1 O VAL A 64 N PHE A 10 SHEET 4 AA1 9 LYS A 95 ILE A 99 1 O LEU A 97 N PHE A 63 SHEET 5 AA1 9 LEU A 186 ILE A 189 1 O ILE A 189 N GLY A 98 SHEET 6 AA1 9 MET A 179 ILE A 182 -1 N TYR A 180 O CYS A 188 SHEET 7 AA1 9 ALA A 166 TYR A 171 -1 N LEU A 169 O MET A 179 SHEET 8 AA1 9 GLU A 122 ILE A 130 -1 N THR A 129 O TYR A 171 SHEET 9 AA1 9 SER A 148 HIS A 155 -1 O LYS A 153 N LYS A 124 SHEET 1 AA2 2 THR A 113 ARG A 116 0 SHEET 2 AA2 2 ASP A 157 VAL A 161 -1 O GLU A 158 N GLY A 115 SHEET 1 AA3 9 GLU B 39 PHE B 44 0 SHEET 2 AA3 9 LYS B 5 PHE B 10 1 N LYS B 5 O HIS B 40 SHEET 3 AA3 9 GLY B 62 ILE B 65 1 O VAL B 64 N PHE B 10 SHEET 4 AA3 9 ILE B 96 ILE B 99 1 O LEU B 97 N PHE B 63 SHEET 5 AA3 9 LEU B 186 ILE B 189 1 O PHE B 187 N GLY B 98 SHEET 6 AA3 9 MET B 179 ILE B 182 -1 N TYR B 180 O CYS B 188 SHEET 7 AA3 9 ALA B 166 TYR B 171 -1 N LYS B 167 O SER B 181 SHEET 8 AA3 9 GLU B 122 ILE B 130 -1 N THR B 129 O TYR B 171 SHEET 9 AA3 9 SER B 148 HIS B 155 -1 O LYS B 153 N LYS B 124 SHEET 1 AA4 2 THR B 113 ARG B 116 0 SHEET 2 AA4 2 ASP B 157 VAL B 161 -1 O GLU B 158 N GLY B 115 CRYST1 72.289 75.816 102.772 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013833 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009730 0.00000 CONECT 3975 3976 3977 3978 CONECT 3976 3975 CONECT 3977 3975 CONECT 3978 3975 CONECT 3979 3980 3981 3982 CONECT 3980 3979 CONECT 3981 3979 CONECT 3982 3979 CONECT 3983 3984 3985 CONECT 3984 3983 CONECT 3985 3983 3986 3987 CONECT 3986 3985 CONECT 3987 3985 3988 CONECT 3988 3987 CONECT 3999 4000 4001 4002 CONECT 4000 3999 CONECT 4001 3999 CONECT 4002 3999 MASTER 418 0 6 20 22 0 0 6 4452 2 18 40 END