data_9K8B # _entry.id 9K8B # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.406 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9K8B pdb_00009k8b 10.2210/pdb9k8b/pdb WWPDB D_1300052918 ? ? EMDB EMD-62167 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-10-29 ? 2 'EM metadata' 1 0 2025-10-29 ? 3 'Half map' 1 0 2025-10-29 1 4 'Half map' 1 0 2025-10-29 2 5 Image 1 0 2025-10-29 ? 6 'Primary map' 1 0 2025-10-29 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9K8B _pdbx_database_status.recvd_initial_deposition_date 2024-10-24 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of monomer of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-34' _pdbx_database_related.db_id EMD-62167 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email caolongxing@westlake.edu.cn _pdbx_contact_author.name_first longxing _pdbx_contact_author.name_last cao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4002-3648 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Qu, Y.N.' 1 0000-0001-5398-286X 'Cao, L.X.' 2 0000-0003-4002-3648 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'De novo design of metal ion regulated protein assemblies' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Qu, Y.N.' 1 0000-0001-5398-286X primary 'Cao, L.X.' 2 0000-0003-4002-3648 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Cage-t32-Zn1-HEHE-34 27724.348 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGHHHHHHHHSSGLEVLFQGPGGTMEKLKEIVKHLEVAIKYLKEGKVDLADLVVADAIELAKEAGDKASLEILKVAHKAI DTLGREGKLEEAAKIVKYAKEYVEAKIKGDREKLRELLEKVKKDVLEAIKKGDEEFYEALVKIARIIAEDLGDEKSLKVL EALEEFFKEWKRLEKEGKSLDEKLHLFLRVGERLLEIGDKESLEMLIELLEELAKEIKKAGNEELLVRAEAAIKDIRKHI KEL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGHHHHHHHHSSGLEVLFQGPGGTMEKLKEIVKHLEVAIKYLKEGKVDLADLVVADAIELAKEAGDKASLEILKVAHKAI DTLGREGKLEEAAKIVKYAKEYVEAKIKGDREKLRELLEKVKKDVLEAIKKGDEEFYEALVKIARIIAEDLGDEKSLKVL EALEEFFKEWKRLEKEGKSLDEKLHLFLRVGERLLEIGDKESLEMLIELLEELAKEIKKAGNEELLVRAEAAIKDIRKHI KEL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'ZINC ION' _pdbx_entity_nonpoly.comp_id ZN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 GLU n 1 16 VAL n 1 17 LEU n 1 18 PHE n 1 19 GLN n 1 20 GLY n 1 21 PRO n 1 22 GLY n 1 23 GLY n 1 24 THR n 1 25 MET n 1 26 GLU n 1 27 LYS n 1 28 LEU n 1 29 LYS n 1 30 GLU n 1 31 ILE n 1 32 VAL n 1 33 LYS n 1 34 HIS n 1 35 LEU n 1 36 GLU n 1 37 VAL n 1 38 ALA n 1 39 ILE n 1 40 LYS n 1 41 TYR n 1 42 LEU n 1 43 LYS n 1 44 GLU n 1 45 GLY n 1 46 LYS n 1 47 VAL n 1 48 ASP n 1 49 LEU n 1 50 ALA n 1 51 ASP n 1 52 LEU n 1 53 VAL n 1 54 VAL n 1 55 ALA n 1 56 ASP n 1 57 ALA n 1 58 ILE n 1 59 GLU n 1 60 LEU n 1 61 ALA n 1 62 LYS n 1 63 GLU n 1 64 ALA n 1 65 GLY n 1 66 ASP n 1 67 LYS n 1 68 ALA n 1 69 SER n 1 70 LEU n 1 71 GLU n 1 72 ILE n 1 73 LEU n 1 74 LYS n 1 75 VAL n 1 76 ALA n 1 77 HIS n 1 78 LYS n 1 79 ALA n 1 80 ILE n 1 81 ASP n 1 82 THR n 1 83 LEU n 1 84 GLY n 1 85 ARG n 1 86 GLU n 1 87 GLY n 1 88 LYS n 1 89 LEU n 1 90 GLU n 1 91 GLU n 1 92 ALA n 1 93 ALA n 1 94 LYS n 1 95 ILE n 1 96 VAL n 1 97 LYS n 1 98 TYR n 1 99 ALA n 1 100 LYS n 1 101 GLU n 1 102 TYR n 1 103 VAL n 1 104 GLU n 1 105 ALA n 1 106 LYS n 1 107 ILE n 1 108 LYS n 1 109 GLY n 1 110 ASP n 1 111 ARG n 1 112 GLU n 1 113 LYS n 1 114 LEU n 1 115 ARG n 1 116 GLU n 1 117 LEU n 1 118 LEU n 1 119 GLU n 1 120 LYS n 1 121 VAL n 1 122 LYS n 1 123 LYS n 1 124 ASP n 1 125 VAL n 1 126 LEU n 1 127 GLU n 1 128 ALA n 1 129 ILE n 1 130 LYS n 1 131 LYS n 1 132 GLY n 1 133 ASP n 1 134 GLU n 1 135 GLU n 1 136 PHE n 1 137 TYR n 1 138 GLU n 1 139 ALA n 1 140 LEU n 1 141 VAL n 1 142 LYS n 1 143 ILE n 1 144 ALA n 1 145 ARG n 1 146 ILE n 1 147 ILE n 1 148 ALA n 1 149 GLU n 1 150 ASP n 1 151 LEU n 1 152 GLY n 1 153 ASP n 1 154 GLU n 1 155 LYS n 1 156 SER n 1 157 LEU n 1 158 LYS n 1 159 VAL n 1 160 LEU n 1 161 GLU n 1 162 ALA n 1 163 LEU n 1 164 GLU n 1 165 GLU n 1 166 PHE n 1 167 PHE n 1 168 LYS n 1 169 GLU n 1 170 TRP n 1 171 LYS n 1 172 ARG n 1 173 LEU n 1 174 GLU n 1 175 LYS n 1 176 GLU n 1 177 GLY n 1 178 LYS n 1 179 SER n 1 180 LEU n 1 181 ASP n 1 182 GLU n 1 183 LYS n 1 184 LEU n 1 185 HIS n 1 186 LEU n 1 187 PHE n 1 188 LEU n 1 189 ARG n 1 190 VAL n 1 191 GLY n 1 192 GLU n 1 193 ARG n 1 194 LEU n 1 195 LEU n 1 196 GLU n 1 197 ILE n 1 198 GLY n 1 199 ASP n 1 200 LYS n 1 201 GLU n 1 202 SER n 1 203 LEU n 1 204 GLU n 1 205 MET n 1 206 LEU n 1 207 ILE n 1 208 GLU n 1 209 LEU n 1 210 LEU n 1 211 GLU n 1 212 GLU n 1 213 LEU n 1 214 ALA n 1 215 LYS n 1 216 GLU n 1 217 ILE n 1 218 LYS n 1 219 LYS n 1 220 ALA n 1 221 GLY n 1 222 ASN n 1 223 GLU n 1 224 GLU n 1 225 LEU n 1 226 LEU n 1 227 VAL n 1 228 ARG n 1 229 ALA n 1 230 GLU n 1 231 ALA n 1 232 ALA n 1 233 ILE n 1 234 LYS n 1 235 ASP n 1 236 ILE n 1 237 ARG n 1 238 LYS n 1 239 HIS n 1 240 ILE n 1 241 LYS n 1 242 GLU n 1 243 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 243 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 HIS 3 -16 ? ? ? A . n A 1 4 HIS 4 -15 ? ? ? A . n A 1 5 HIS 5 -14 ? ? ? A . n A 1 6 HIS 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 SER 11 -8 ? ? ? A . n A 1 12 SER 12 -7 ? ? ? A . n A 1 13 GLY 13 -6 ? ? ? A . n A 1 14 LEU 14 -5 ? ? ? A . n A 1 15 GLU 15 -4 ? ? ? A . n A 1 16 VAL 16 -3 ? ? ? A . n A 1 17 LEU 17 -2 ? ? ? A . n A 1 18 PHE 18 -1 ? ? ? A . n A 1 19 GLN 19 0 ? ? ? A . n A 1 20 GLY 20 1 ? ? ? A . n A 1 21 PRO 21 2 ? ? ? A . n A 1 22 GLY 22 3 ? ? ? A . n A 1 23 GLY 23 4 ? ? ? A . n A 1 24 THR 24 5 ? ? ? A . n A 1 25 MET 25 6 6 MET MET A . n A 1 26 GLU 26 7 7 GLU GLU A . n A 1 27 LYS 27 8 8 LYS LYS A . n A 1 28 LEU 28 9 9 LEU LEU A . n A 1 29 LYS 29 10 10 LYS LYS A . n A 1 30 GLU 30 11 11 GLU GLU A . n A 1 31 ILE 31 12 12 ILE ILE A . n A 1 32 VAL 32 13 13 VAL VAL A . n A 1 33 LYS 33 14 14 LYS LYS A . n A 1 34 HIS 34 15 15 HIS HIS A . n A 1 35 LEU 35 16 16 LEU LEU A . n A 1 36 GLU 36 17 17 GLU GLU A . n A 1 37 VAL 37 18 18 VAL VAL A . n A 1 38 ALA 38 19 19 ALA ALA A . n A 1 39 ILE 39 20 20 ILE ILE A . n A 1 40 LYS 40 21 21 LYS LYS A . n A 1 41 TYR 41 22 22 TYR TYR A . n A 1 42 LEU 42 23 23 LEU LEU A . n A 1 43 LYS 43 24 24 LYS LYS A . n A 1 44 GLU 44 25 25 GLU GLU A . n A 1 45 GLY 45 26 26 GLY GLY A . n A 1 46 LYS 46 27 27 LYS LYS A . n A 1 47 VAL 47 28 28 VAL VAL A . n A 1 48 ASP 48 29 29 ASP ASP A . n A 1 49 LEU 49 30 30 LEU LEU A . n A 1 50 ALA 50 31 31 ALA ALA A . n A 1 51 ASP 51 32 32 ASP ASP A . n A 1 52 LEU 52 33 33 LEU LEU A . n A 1 53 VAL 53 34 34 VAL VAL A . n A 1 54 VAL 54 35 35 VAL VAL A . n A 1 55 ALA 55 36 36 ALA ALA A . n A 1 56 ASP 56 37 37 ASP ASP A . n A 1 57 ALA 57 38 38 ALA ALA A . n A 1 58 ILE 58 39 39 ILE ILE A . n A 1 59 GLU 59 40 40 GLU GLU A . n A 1 60 LEU 60 41 41 LEU LEU A . n A 1 61 ALA 61 42 42 ALA ALA A . n A 1 62 LYS 62 43 43 LYS LYS A . n A 1 63 GLU 63 44 44 GLU GLU A . n A 1 64 ALA 64 45 45 ALA ALA A . n A 1 65 GLY 65 46 46 GLY GLY A . n A 1 66 ASP 66 47 47 ASP ASP A . n A 1 67 LYS 67 48 48 LYS LYS A . n A 1 68 ALA 68 49 49 ALA ALA A . n A 1 69 SER 69 50 50 SER SER A . n A 1 70 LEU 70 51 51 LEU LEU A . n A 1 71 GLU 71 52 52 GLU GLU A . n A 1 72 ILE 72 53 53 ILE ILE A . n A 1 73 LEU 73 54 54 LEU LEU A . n A 1 74 LYS 74 55 55 LYS LYS A . n A 1 75 VAL 75 56 56 VAL VAL A . n A 1 76 ALA 76 57 57 ALA ALA A . n A 1 77 HIS 77 58 58 HIS HIS A . n A 1 78 LYS 78 59 59 LYS LYS A . n A 1 79 ALA 79 60 60 ALA ALA A . n A 1 80 ILE 80 61 61 ILE ILE A . n A 1 81 ASP 81 62 62 ASP ASP A . n A 1 82 THR 82 63 63 THR THR A . n A 1 83 LEU 83 64 64 LEU LEU A . n A 1 84 GLY 84 65 65 GLY GLY A . n A 1 85 ARG 85 66 66 ARG ARG A . n A 1 86 GLU 86 67 67 GLU GLU A . n A 1 87 GLY 87 68 68 GLY GLY A . n A 1 88 LYS 88 69 69 LYS LYS A . n A 1 89 LEU 89 70 70 LEU LEU A . n A 1 90 GLU 90 71 71 GLU GLU A . n A 1 91 GLU 91 72 72 GLU GLU A . n A 1 92 ALA 92 73 73 ALA ALA A . n A 1 93 ALA 93 74 74 ALA ALA A . n A 1 94 LYS 94 75 75 LYS LYS A . n A 1 95 ILE 95 76 76 ILE ILE A . n A 1 96 VAL 96 77 77 VAL VAL A . n A 1 97 LYS 97 78 78 LYS LYS A . n A 1 98 TYR 98 79 79 TYR TYR A . n A 1 99 ALA 99 80 80 ALA ALA A . n A 1 100 LYS 100 81 81 LYS LYS A . n A 1 101 GLU 101 82 82 GLU GLU A . n A 1 102 TYR 102 83 83 TYR TYR A . n A 1 103 VAL 103 84 84 VAL VAL A . n A 1 104 GLU 104 85 85 GLU GLU A . n A 1 105 ALA 105 86 86 ALA ALA A . n A 1 106 LYS 106 87 87 LYS LYS A . n A 1 107 ILE 107 88 88 ILE ILE A . n A 1 108 LYS 108 89 89 LYS LYS A . n A 1 109 GLY 109 90 90 GLY GLY A . n A 1 110 ASP 110 91 91 ASP ASP A . n A 1 111 ARG 111 92 92 ARG ARG A . n A 1 112 GLU 112 93 93 GLU GLU A . n A 1 113 LYS 113 94 94 LYS LYS A . n A 1 114 LEU 114 95 95 LEU LEU A . n A 1 115 ARG 115 96 96 ARG ARG A . n A 1 116 GLU 116 97 97 GLU GLU A . n A 1 117 LEU 117 98 98 LEU LEU A . n A 1 118 LEU 118 99 99 LEU LEU A . n A 1 119 GLU 119 100 100 GLU GLU A . n A 1 120 LYS 120 101 101 LYS LYS A . n A 1 121 VAL 121 102 102 VAL VAL A . n A 1 122 LYS 122 103 103 LYS LYS A . n A 1 123 LYS 123 104 104 LYS LYS A . n A 1 124 ASP 124 105 105 ASP ASP A . n A 1 125 VAL 125 106 106 VAL VAL A . n A 1 126 LEU 126 107 107 LEU LEU A . n A 1 127 GLU 127 108 108 GLU GLU A . n A 1 128 ALA 128 109 109 ALA ALA A . n A 1 129 ILE 129 110 110 ILE ILE A . n A 1 130 LYS 130 111 111 LYS LYS A . n A 1 131 LYS 131 112 112 LYS LYS A . n A 1 132 GLY 132 113 113 GLY GLY A . n A 1 133 ASP 133 114 114 ASP ASP A . n A 1 134 GLU 134 115 115 GLU GLU A . n A 1 135 GLU 135 116 116 GLU GLU A . n A 1 136 PHE 136 117 117 PHE PHE A . n A 1 137 TYR 137 118 118 TYR TYR A . n A 1 138 GLU 138 119 119 GLU GLU A . n A 1 139 ALA 139 120 120 ALA ALA A . n A 1 140 LEU 140 121 121 LEU LEU A . n A 1 141 VAL 141 122 122 VAL VAL A . n A 1 142 LYS 142 123 123 LYS LYS A . n A 1 143 ILE 143 124 124 ILE ILE A . n A 1 144 ALA 144 125 125 ALA ALA A . n A 1 145 ARG 145 126 126 ARG ARG A . n A 1 146 ILE 146 127 127 ILE ILE A . n A 1 147 ILE 147 128 128 ILE ILE A . n A 1 148 ALA 148 129 129 ALA ALA A . n A 1 149 GLU 149 130 130 GLU GLU A . n A 1 150 ASP 150 131 131 ASP ASP A . n A 1 151 LEU 151 132 132 LEU LEU A . n A 1 152 GLY 152 133 133 GLY GLY A . n A 1 153 ASP 153 134 134 ASP ASP A . n A 1 154 GLU 154 135 135 GLU GLU A . n A 1 155 LYS 155 136 136 LYS LYS A . n A 1 156 SER 156 137 137 SER SER A . n A 1 157 LEU 157 138 138 LEU LEU A . n A 1 158 LYS 158 139 139 LYS LYS A . n A 1 159 VAL 159 140 140 VAL VAL A . n A 1 160 LEU 160 141 141 LEU LEU A . n A 1 161 GLU 161 142 142 GLU GLU A . n A 1 162 ALA 162 143 143 ALA ALA A . n A 1 163 LEU 163 144 144 LEU LEU A . n A 1 164 GLU 164 145 145 GLU GLU A . n A 1 165 GLU 165 146 146 GLU GLU A . n A 1 166 PHE 166 147 147 PHE PHE A . n A 1 167 PHE 167 148 148 PHE PHE A . n A 1 168 LYS 168 149 149 LYS LYS A . n A 1 169 GLU 169 150 150 GLU GLU A . n A 1 170 TRP 170 151 151 TRP TRP A . n A 1 171 LYS 171 152 152 LYS LYS A . n A 1 172 ARG 172 153 153 ARG ARG A . n A 1 173 LEU 173 154 154 LEU LEU A . n A 1 174 GLU 174 155 155 GLU GLU A . n A 1 175 LYS 175 156 156 LYS LYS A . n A 1 176 GLU 176 157 157 GLU GLU A . n A 1 177 GLY 177 158 158 GLY GLY A . n A 1 178 LYS 178 159 159 LYS LYS A . n A 1 179 SER 179 160 160 SER SER A . n A 1 180 LEU 180 161 161 LEU LEU A . n A 1 181 ASP 181 162 162 ASP ASP A . n A 1 182 GLU 182 163 163 GLU GLU A . n A 1 183 LYS 183 164 164 LYS LYS A . n A 1 184 LEU 184 165 165 LEU LEU A . n A 1 185 HIS 185 166 166 HIS HIS A . n A 1 186 LEU 186 167 167 LEU LEU A . n A 1 187 PHE 187 168 168 PHE PHE A . n A 1 188 LEU 188 169 169 LEU LEU A . n A 1 189 ARG 189 170 170 ARG ARG A . n A 1 190 VAL 190 171 171 VAL VAL A . n A 1 191 GLY 191 172 172 GLY GLY A . n A 1 192 GLU 192 173 173 GLU GLU A . n A 1 193 ARG 193 174 174 ARG ARG A . n A 1 194 LEU 194 175 175 LEU LEU A . n A 1 195 LEU 195 176 176 LEU LEU A . n A 1 196 GLU 196 177 177 GLU GLU A . n A 1 197 ILE 197 178 178 ILE ILE A . n A 1 198 GLY 198 179 179 GLY GLY A . n A 1 199 ASP 199 180 180 ASP ASP A . n A 1 200 LYS 200 181 181 LYS LYS A . n A 1 201 GLU 201 182 182 GLU GLU A . n A 1 202 SER 202 183 183 SER SER A . n A 1 203 LEU 203 184 184 LEU LEU A . n A 1 204 GLU 204 185 185 GLU GLU A . n A 1 205 MET 205 186 186 MET MET A . n A 1 206 LEU 206 187 187 LEU LEU A . n A 1 207 ILE 207 188 188 ILE ILE A . n A 1 208 GLU 208 189 189 GLU GLU A . n A 1 209 LEU 209 190 190 LEU LEU A . n A 1 210 LEU 210 191 191 LEU LEU A . n A 1 211 GLU 211 192 192 GLU GLU A . n A 1 212 GLU 212 193 193 GLU GLU A . n A 1 213 LEU 213 194 194 LEU LEU A . n A 1 214 ALA 214 195 195 ALA ALA A . n A 1 215 LYS 215 196 196 LYS LYS A . n A 1 216 GLU 216 197 197 GLU GLU A . n A 1 217 ILE 217 198 198 ILE ILE A . n A 1 218 LYS 218 199 199 LYS LYS A . n A 1 219 LYS 219 200 200 LYS LYS A . n A 1 220 ALA 220 201 201 ALA ALA A . n A 1 221 GLY 221 202 202 GLY GLY A . n A 1 222 ASN 222 203 203 ASN ASN A . n A 1 223 GLU 223 204 204 GLU GLU A . n A 1 224 GLU 224 205 205 GLU GLU A . n A 1 225 LEU 225 206 206 LEU LEU A . n A 1 226 LEU 226 207 207 LEU LEU A . n A 1 227 VAL 227 208 208 VAL VAL A . n A 1 228 ARG 228 209 209 ARG ARG A . n A 1 229 ALA 229 210 210 ALA ALA A . n A 1 230 GLU 230 211 211 GLU GLU A . n A 1 231 ALA 231 212 212 ALA ALA A . n A 1 232 ALA 232 213 213 ALA ALA A . n A 1 233 ILE 233 214 214 ILE ILE A . n A 1 234 LYS 234 215 215 LYS LYS A . n A 1 235 ASP 235 216 216 ASP ASP A . n A 1 236 ILE 236 217 217 ILE ILE A . n A 1 237 ARG 237 218 218 ARG ARG A . n A 1 238 LYS 238 219 219 LYS LYS A . n A 1 239 HIS 239 220 220 HIS HIS A . n A 1 240 ILE 240 221 221 ILE ILE A . n A 1 241 LYS 241 222 222 LYS LYS A . n A 1 242 GLU 242 223 223 GLU GLU A . n A 1 243 LEU 243 224 224 LEU LEU A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id ZN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id ZN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 301 225 ZN ZN A . C 2 ZN 1 302 226 ZN ZN A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9K8B _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9K8B _struct.title 'Cryo-EM structure of monomer of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-34' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9K8B _struct_keywords.text 'Zinc-binding protein, METAL BINDING PROTEIN' _struct_keywords.pdbx_keywords 'METAL BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9K8B _struct_ref.pdbx_db_accession 9K8B _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9K8B _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 243 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9K8B _struct_ref_seq.db_align_beg -18 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 224 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -18 _struct_ref_seq.pdbx_auth_seq_align_end 224 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 26 ? LYS A 43 ? GLU A 7 LYS A 24 1 ? 18 HELX_P HELX_P2 AA2 LYS A 46 ? LYS A 62 ? LYS A 27 LYS A 43 1 ? 17 HELX_P HELX_P3 AA3 ALA A 68 ? GLU A 86 ? ALA A 49 GLU A 67 1 ? 19 HELX_P HELX_P4 AA4 ALA A 92 ? ALA A 105 ? ALA A 73 ALA A 86 1 ? 14 HELX_P HELX_P5 AA5 LYS A 113 ? GLY A 132 ? LYS A 94 GLY A 113 1 ? 20 HELX_P HELX_P6 AA6 ASP A 133 ? GLU A 149 ? ASP A 114 GLU A 130 1 ? 17 HELX_P HELX_P7 AA7 LEU A 157 ? GLU A 176 ? LEU A 138 GLU A 157 1 ? 20 HELX_P HELX_P8 AA8 SER A 179 ? GLY A 198 ? SER A 160 GLY A 179 1 ? 20 HELX_P HELX_P9 AA9 LYS A 200 ? ALA A 220 ? LYS A 181 ALA A 201 1 ? 21 HELX_P HELX_P10 AB1 LEU A 225 ? LEU A 243 ? LEU A 206 LEU A 224 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 51 OD1 ? ? ? 1_555 B ZN . ZN ? ? A ASP 32 A ZN 301 1_555 ? ? ? ? ? ? ? 1.955 ? ? metalc2 metalc ? ? A HIS 77 NE2 ? ? ? 1_555 B ZN . ZN ? ? A HIS 58 A ZN 301 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc3 metalc ? ? A ASP 181 OD2 ? ? ? 1_555 C ZN . ZN ? ? A ASP 162 A ZN 302 1_555 ? ? ? ? ? ? ? 1.984 ? ? metalc4 metalc ? ? A HIS 185 NE2 ? ? ? 1_555 C ZN . ZN ? ? A HIS 166 A ZN 302 1_555 ? ? ? ? ? ? ? 2.102 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 51 ? A ASP 32 ? 1_555 ZN ? B ZN . ? A ZN 301 ? 1_555 NE2 ? A HIS 77 ? A HIS 58 ? 1_555 73.3 ? 2 OD2 ? A ASP 181 ? A ASP 162 ? 1_555 ZN ? C ZN . ? A ZN 302 ? 1_555 NE2 ? A HIS 185 ? A HIS 166 ? 1_555 79.1 ? # _pdbx_entry_details.entry_id 9K8B _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 7 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 77.65 _pdbx_validate_torsion.psi -95.84 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9K8B _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9K8B _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.06 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 578620 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name Cage-t32-Zn1-HEHE-34 _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9K8B _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9K8B _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9K8B _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -18 ? A MET 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A HIS -16 ? A HIS 3 4 1 Y 1 A HIS -15 ? A HIS 4 5 1 Y 1 A HIS -14 ? A HIS 5 6 1 Y 1 A HIS -13 ? A HIS 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A SER -8 ? A SER 11 12 1 Y 1 A SER -7 ? A SER 12 13 1 Y 1 A GLY -6 ? A GLY 13 14 1 Y 1 A LEU -5 ? A LEU 14 15 1 Y 1 A GLU -4 ? A GLU 15 16 1 Y 1 A VAL -3 ? A VAL 16 17 1 Y 1 A LEU -2 ? A LEU 17 18 1 Y 1 A PHE -1 ? A PHE 18 19 1 Y 1 A GLN 0 ? A GLN 19 20 1 Y 1 A GLY 1 ? A GLY 20 21 1 Y 1 A PRO 2 ? A PRO 21 22 1 Y 1 A GLY 3 ? A GLY 22 23 1 Y 1 A GLY 4 ? A GLY 23 24 1 Y 1 A THR 5 ? A THR 24 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 ZN ZN ZN N N 374 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_admin.current_status REL _em_admin.deposition_date 2024-10-24 _em_admin.deposition_site PDBJ _em_admin.entry_id 9K8B _em_admin.last_update 2025-10-29 _em_admin.map_release_date 2025-10-29 _em_admin.title 'Cryo-EM structure of monomer of designed zinc-induced tetrahedron Cage-t32-Zn1-HEHE-34' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag YES _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.3 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 562 _em_entity_assembly_naturalsource.organism 'Escherichia coli' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (MoST, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9K8B _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S ZN # loop_ #