HEADER LYASE 28-OCT-24 9K9X TITLE CRYSTAL STRUCTURE OF BICYCLOGERMACRENE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BICYCLOGERMACRENE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TERPENE SYNTHASE 5,LDTPS5; COMPND 5 EC: 4.2.3.100; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BICYCLOGERMACRENE SYNTHASE; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: TERPENE SYNTHASE 5,LDTPS5; COMPND 11 EC: 4.2.3.100; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYLA DULCIS; SOURCE 3 ORGANISM_TAXID: 542674; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: PHYLA DULCIS; SOURCE 8 ORGANISM_TAXID: 542674; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TERPENE SYNTHASE, COMPLEX WITH MG, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.X.TIAN,S.L.FAN,X.L.CHEN,L.GUO REVDAT 1 13-MAY-26 9K9X 0 JRNL AUTH L.GUO,X.G.YAN,S.X.NIE,M.Y.GE,Y.K.LI,Y.L.LU,W.G.LI,X.C.ZHANG, JRNL AUTH 2 D.M.LIANG,Y.H.ZHAO,H.X.TANG,X.L.CHEN,S.L.FAN,Y.F.TANG, JRNL AUTH 3 J.J.QIAO,B.X.TIAN JRNL TITL ENHANCING ENZYME ACTIVITY WITH MUTATION COMBINATIONS GUIDED JRNL TITL 2 BY FEW-SHOT LEARNING AND CAUSAL INFERENCE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 92661 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.150 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.8900 - 3.8800 1.00 6731 151 0.1525 0.1655 REMARK 3 2 3.8800 - 3.3900 1.00 6662 142 0.1599 0.1846 REMARK 3 3 3.3900 - 3.0800 1.00 6650 143 0.1740 0.2079 REMARK 3 4 3.0800 - 2.8600 1.00 6595 146 0.1833 0.1976 REMARK 3 5 2.8600 - 2.6900 1.00 6605 148 0.1809 0.2139 REMARK 3 6 2.6900 - 2.5600 1.00 6607 144 0.1825 0.1995 REMARK 3 7 2.5600 - 2.4500 1.00 6550 149 0.1909 0.2407 REMARK 3 8 2.4500 - 2.3500 1.00 6583 142 0.1891 0.2614 REMARK 3 9 2.3500 - 2.2700 0.99 6534 139 0.2031 0.2141 REMARK 3 10 2.2700 - 2.2000 0.98 6458 145 0.2137 0.2503 REMARK 3 11 2.2000 - 2.1400 0.97 6372 141 0.2342 0.2673 REMARK 3 12 2.0800 - 2.0300 0.82 5344 109 0.2978 0.3318 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : 0.040 1281 REMARK 3 PLANARITY : 0.007 1549 REMARK 3 DIHEDRAL : 7.149 1171 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.2925 -30.5080 -59.8147 REMARK 3 T TENSOR REMARK 3 T11: 0.2229 T22: 0.2316 REMARK 3 T33: 0.1870 T12: 0.0502 REMARK 3 T13: -0.0237 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.0260 L22: 1.3401 REMARK 3 L33: 2.3570 L12: 0.2570 REMARK 3 L13: 0.3776 L23: -0.6115 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.1133 S13: 0.0610 REMARK 3 S21: -0.0154 S22: -0.0564 S23: -0.0034 REMARK 3 S31: -0.1994 S32: -0.0200 S33: 0.0888 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 436 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6874 -40.6656 -30.4556 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1608 REMARK 3 T33: 0.1974 T12: -0.0050 REMARK 3 T13: -0.0260 T23: -0.0297 REMARK 3 L TENSOR REMARK 3 L11: 0.3635 L22: 1.0512 REMARK 3 L33: 3.2016 L12: -0.0605 REMARK 3 L13: 0.0448 L23: -0.4425 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: -0.0102 S13: -0.0255 REMARK 3 S21: 0.1261 S22: -0.0698 S23: 0.0555 REMARK 3 S31: -0.0216 S32: 0.0522 S33: 0.0246 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 437 THROUGH 565 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.4582 -33.0374 -42.8877 REMARK 3 T TENSOR REMARK 3 T11: 0.2590 T22: 0.2916 REMARK 3 T33: 0.2364 T12: 0.0448 REMARK 3 T13: -0.0328 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.3199 L22: 2.6422 REMARK 3 L33: 2.0928 L12: -0.1859 REMARK 3 L13: 0.1928 L23: -0.1035 REMARK 3 S TENSOR REMARK 3 S11: 0.0394 S12: -0.0200 S13: -0.0411 REMARK 3 S21: 0.0383 S22: -0.0304 S23: 0.4118 REMARK 3 S31: -0.1796 S32: -0.3653 S33: -0.0122 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 374 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.6593 -23.1176 16.5243 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.1798 REMARK 3 T33: 0.2291 T12: 0.0209 REMARK 3 T13: -0.0091 T23: -0.0198 REMARK 3 L TENSOR REMARK 3 L11: 0.4224 L22: 0.3416 REMARK 3 L33: 1.0500 L12: -0.0272 REMARK 3 L13: -0.2109 L23: -0.0678 REMARK 3 S TENSOR REMARK 3 S11: -0.0752 S12: -0.0537 S13: -0.0411 REMARK 3 S21: -0.0049 S22: 0.0225 S23: 0.0345 REMARK 3 S31: 0.0444 S32: -0.0190 S33: 0.0537 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 375 THROUGH 565 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1207 -24.1842 4.9412 REMARK 3 T TENSOR REMARK 3 T11: 0.2744 T22: 0.2970 REMARK 3 T33: 0.3063 T12: -0.0049 REMARK 3 T13: -0.0398 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.2893 L22: 1.4129 REMARK 3 L33: 2.1572 L12: 0.3196 REMARK 3 L13: -0.6259 L23: 0.1303 REMARK 3 S TENSOR REMARK 3 S11: -0.0414 S12: 0.0983 S13: 0.0309 REMARK 3 S21: -0.0347 S22: -0.0155 S23: 0.3461 REMARK 3 S31: 0.0966 S32: -0.4407 S33: 0.0467 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9K9X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 02-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300052976. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92661 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 30.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3G4D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4-0.48 M SODIUM PHOSPHATE MONOBASIC REMARK 280 MONOHYDRATE AND 0.68-0.76M POTASSIUM PHOSPHATE DIBASIC, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.27550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 55.85150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 119.13500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.27550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 55.85150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 119.13500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.27550 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 55.85150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 119.13500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.27550 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 55.85150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 119.13500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 ILE A 7 REMARK 465 SER A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 GLN A 15 REMARK 465 ASP A 16 REMARK 465 VAL A 17 REMARK 465 THR A 18 REMARK 465 ARG A 19 REMARK 465 ASN A 20 REMARK 465 ILE A 21 REMARK 465 THR A 404 REMARK 465 PRO A 405 REMARK 465 THR A 406 REMARK 465 THR A 407 REMARK 465 ASP A 408 REMARK 465 GLU A 409 REMARK 465 HIS A 410 REMARK 465 ASN A 473 REMARK 465 HIS A 474 REMARK 465 VAL A 475 REMARK 465 VAL A 476 REMARK 465 SER A 477 REMARK 465 SER A 478 REMARK 465 VAL A 479 REMARK 465 GLU A 480 REMARK 465 CYS A 481 REMARK 465 TYR A 482 REMARK 465 VAL A 483 REMARK 465 GLN A 484 REMARK 465 GLU A 485 REMARK 465 SER A 486 REMARK 465 LYS A 487 REMARK 465 THR B 404 REMARK 465 PRO B 405 REMARK 465 THR B 406 REMARK 465 THR B 407 REMARK 465 ASP B 408 REMARK 465 GLU B 409 REMARK 465 HIS B 410 REMARK 465 MET B 411 REMARK 465 ARG B 412 REMARK 465 LEU B 413 REMARK 465 ALA B 414 REMARK 465 LEU B 415 REMARK 465 ASN B 473 REMARK 465 HIS B 474 REMARK 465 VAL B 475 REMARK 465 VAL B 476 REMARK 465 SER B 477 REMARK 465 SER B 478 REMARK 465 VAL B 479 REMARK 465 GLU B 480 REMARK 465 CYS B 481 REMARK 465 TYR B 482 REMARK 465 VAL B 483 REMARK 465 GLN B 484 REMARK 465 GLU B 485 REMARK 465 SER B 486 REMARK 465 LYS B 487 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 411 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 27 O HOH A 701 1.87 REMARK 500 O HOH A 998 O HOH A 1013 1.90 REMARK 500 O HOH A 910 O HOH A 968 1.99 REMARK 500 O HOH B 1030 O HOH B 1042 2.01 REMARK 500 O HOH A 1005 O HOH A 1007 2.01 REMARK 500 OE1 GLU A 96 O HOH A 702 2.05 REMARK 500 OH TYR B 167 O HOH B 701 2.06 REMARK 500 O HOH A 708 O HOH A 792 2.06 REMARK 500 O HOH A 967 O HOH A 1011 2.08 REMARK 500 O HOH A 954 O HOH A 1018 2.10 REMARK 500 O HOH A 894 O HOH A 1035 2.12 REMARK 500 OD2 ASP B 43 O HOH B 702 2.15 REMARK 500 O HOH A 886 O HOH A 1017 2.15 REMARK 500 OE1 GLU B 534 O HOH B 703 2.16 REMARK 500 O HOH B 738 O HOH B 811 2.16 REMARK 500 O HOH A 912 O HOH A 914 2.17 REMARK 500 NH2 ARG B 338 O HOH B 704 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 145 30.34 -91.89 REMARK 500 LYS A 146 5.82 -67.82 REMARK 500 ASN A 151 -127.33 51.70 REMARK 500 LEU A 154 79.15 -106.53 REMARK 500 ASP A 271 66.05 62.29 REMARK 500 SER B 73 -9.45 -55.93 REMARK 500 HIS B 118 34.43 -99.39 REMARK 500 PHE B 145 57.26 -92.71 REMARK 500 ARG B 282 44.55 -141.02 REMARK 500 ALA B 322 30.75 -144.91 REMARK 500 TYR B 323 -45.12 -138.88 REMARK 500 ILE B 559 -60.58 -121.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 154 PRO B 155 -149.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1049 DISTANCE = 5.89 ANGSTROMS DBREF 9K9X A 1 565 UNP J7LMP2 TPS5_PHYDL 1 565 DBREF 9K9X B 22 565 UNP J7LMP2 TPS5_PHYDL 22 565 SEQADV 9K9X SER B 19 UNP J7LMP2 EXPRESSION TAG SEQADV 9K9X HIS B 20 UNP J7LMP2 EXPRESSION TAG SEQADV 9K9X MET B 21 UNP J7LMP2 EXPRESSION TAG SEQRES 1 A 565 MET ASP LEU ALA LYS GLN ILE SER VAL VAL ASP SER SER SEQRES 2 A 565 LEU GLN ASP VAL THR ARG ASN ILE THR ARG PRO LEU ALA SEQRES 3 A 565 ASN PHE HIS PRO ASN VAL TRP GLY ASP ARG PHE LEU LEU SEQRES 4 A 565 ASN ASN SER ASP GLN VAL GLN LEU LYS MET ASN ALA LEU SEQRES 5 A 565 ASP LYS GLU GLU ALA ILE GLU LYS LEU LYS GLU GLY VAL SEQRES 6 A 565 ARG ARG LYS LEU LYS GLU ALA SER ASN ASP TYR MET ARG SEQRES 7 A 565 LEU ILE GLN MET VAL ASP ALA ILE GLN ARG LEU GLY PHE SEQRES 8 A 565 ALA TYR HIS PHE GLU GLU GLU ILE ASP GLN ALA LEU GLN SEQRES 9 A 565 CYS LEU PHE GLU ARG HIS HIS GLU TYR CYS LYS ASP ASN SEQRES 10 A 565 HIS ASP LEU TYR ALA ASN SER LEU SER PHE ARG LEU LEU SEQRES 11 A 565 ARG GLN GLN GLY TYR ARG VAL SER CYS GLU ILE PHE GLU SEQRES 12 A 565 LYS PHE LYS ASP VAL LYS GLY ASN PHE MET LEU PRO ASN SEQRES 13 A 565 ASN GLY GLU VAL MET GLY VAL LEU GLU PHE TYR GLU ALA SEQRES 14 A 565 THR HIS LEU ARG VAL HIS GLY GLU ASP LEU LEU ASP HIS SEQRES 15 A 565 ASP PHE VAL LEU SER ARG GLU TYR LEU GLU SER VAL LEU SEQRES 16 A 565 PRO SER LEU THR ASN PRO LEU ALA GLU GLN VAL ASP HIS SEQRES 17 A 565 ALA LEU HIS GLN HIS SER ASN ARG ARG GLY LEU SER ARG SEQRES 18 A 565 LEU GLU ALA ARG HIS TYR MET PRO VAL TYR GLU GLN TYR SEQRES 19 A 565 ALA SER HIS ASP GLN TYR LEU LEU LYS LEU ALA LYS LEU SEQRES 20 A 565 ASP PHE ASN MET LEU GLN SER LEU HIS LYS GLU GLU LEU SEQRES 21 A 565 SER GLU LEU SER ARG TRP TRP LYS GLY ILE ASP VAL ALA SEQRES 22 A 565 ARG ASN LEU PRO TYR ALA ARG ASP ARG ILE VAL GLU THR SEQRES 23 A 565 TYR PHE TRP ILE LEU GLY VAL TYR PHE GLU PRO GLU TYR SEQRES 24 A 565 ALA ALA ALA ARG LYS ILE LEU VAL LYS VAL GLN SER LEU SEQRES 25 A 565 PHE SER ILE ILE ASP ASP THR PHE ASP ALA TYR GLY THR SEQRES 26 A 565 PHE GLU GLU LEU GLN ILE PHE THR GLN ALA LEU GLU ARG SEQRES 27 A 565 TRP SER ILE SER CYS LEU ASP GLN LEU PRO ASP TYR MET SEQRES 28 A 565 LYS LEU ILE TYR LYS THR VAL LEU GLU VAL TYR ASP GLU SEQRES 29 A 565 ILE GLU GLU GLU MET ILE LYS GLN GLY THR SER TYR ARG SEQRES 30 A 565 THR ALA TYR GLY ILE GLU ALA ILE LYS SER LEU THR ARG SEQRES 31 A 565 ASN TYR PHE MET GLU ALA GLU TRP ARG GLU LYS LYS TYR SEQRES 32 A 565 THR PRO THR THR ASP GLU HIS MET ARG LEU ALA LEU LYS SEQRES 33 A 565 THR CYS GLY TYR THR SER LEU ILE ILE ILE SER PHE LEU SEQRES 34 A 565 GLY MET GLY GLU VAL VAL LYS ARG GLU ALA PHE ASP TRP SEQRES 35 A 565 VAL LEU SER GLU PRO ASP PHE VAL LYS ALA SER LEU THR SEQRES 36 A 565 ILE ASN ARG LEU VAL ASP ASP ILE VAL GLY HIS GLU ASP SEQRES 37 A 565 GLU GLN LYS ARG ASN HIS VAL VAL SER SER VAL GLU CYS SEQRES 38 A 565 TYR VAL GLN GLU SER LYS THR SER ARG GLU ASP ALA VAL SEQRES 39 A 565 TYR GLU LEU ASN SER ARG VAL GLU SER THR TRP LYS ASP SEQRES 40 A 565 LEU ASN GLU GLY PHE LEU LYS PRO THR LYS PHE PRO SER SEQRES 41 A 565 PRO LEU LEU TYR ARG VAL LEU ASN TYR SER ARG VAL ILE SEQRES 42 A 565 GLU VAL MET TYR THR LYS GLY ASP TRP TYR THR ASN VAL SEQRES 43 A 565 GLY PRO GLU MET GLN ASP TYR ILE ARG GLN LEU LEU ILE SEQRES 44 A 565 ASP PRO VAL ASN VAL GLU SEQRES 1 B 547 SER HIS MET THR ARG PRO LEU ALA ASN PHE HIS PRO ASN SEQRES 2 B 547 VAL TRP GLY ASP ARG PHE LEU LEU ASN ASN SER ASP GLN SEQRES 3 B 547 VAL GLN LEU LYS MET ASN ALA LEU ASP LYS GLU GLU ALA SEQRES 4 B 547 ILE GLU LYS LEU LYS GLU GLY VAL ARG ARG LYS LEU LYS SEQRES 5 B 547 GLU ALA SER ASN ASP TYR MET ARG LEU ILE GLN MET VAL SEQRES 6 B 547 ASP ALA ILE GLN ARG LEU GLY PHE ALA TYR HIS PHE GLU SEQRES 7 B 547 GLU GLU ILE ASP GLN ALA LEU GLN CYS LEU PHE GLU ARG SEQRES 8 B 547 HIS HIS GLU TYR CYS LYS ASP ASN HIS ASP LEU TYR ALA SEQRES 9 B 547 ASN SER LEU SER PHE ARG LEU LEU ARG GLN GLN GLY TYR SEQRES 10 B 547 ARG VAL SER CYS GLU ILE PHE GLU LYS PHE LYS ASP VAL SEQRES 11 B 547 LYS GLY ASN PHE MET LEU PRO ASN ASN GLY GLU VAL MET SEQRES 12 B 547 GLY VAL LEU GLU PHE TYR GLU ALA THR HIS LEU ARG VAL SEQRES 13 B 547 HIS GLY GLU ASP LEU LEU ASP HIS ASP PHE VAL LEU SER SEQRES 14 B 547 ARG GLU TYR LEU GLU SER VAL LEU PRO SER LEU THR ASN SEQRES 15 B 547 PRO LEU ALA GLU GLN VAL ASP HIS ALA LEU HIS GLN HIS SEQRES 16 B 547 SER ASN ARG ARG GLY LEU SER ARG LEU GLU ALA ARG HIS SEQRES 17 B 547 TYR MET PRO VAL TYR GLU GLN TYR ALA SER HIS ASP GLN SEQRES 18 B 547 TYR LEU LEU LYS LEU ALA LYS LEU ASP PHE ASN MET LEU SEQRES 19 B 547 GLN SER LEU HIS LYS GLU GLU LEU SER GLU LEU SER ARG SEQRES 20 B 547 TRP TRP LYS GLY ILE ASP VAL ALA ARG ASN LEU PRO TYR SEQRES 21 B 547 ALA ARG ASP ARG ILE VAL GLU THR TYR PHE TRP ILE LEU SEQRES 22 B 547 GLY VAL TYR PHE GLU PRO GLU TYR ALA ALA ALA ARG LYS SEQRES 23 B 547 ILE LEU VAL LYS VAL GLN SER LEU PHE SER ILE ILE ASP SEQRES 24 B 547 ASP THR PHE ASP ALA TYR GLY THR PHE GLU GLU LEU GLN SEQRES 25 B 547 ILE PHE THR GLN ALA LEU GLU ARG TRP SER ILE SER CYS SEQRES 26 B 547 LEU ASP GLN LEU PRO ASP TYR MET LYS LEU ILE TYR LYS SEQRES 27 B 547 THR VAL LEU GLU VAL TYR ASP GLU ILE GLU GLU GLU MET SEQRES 28 B 547 ILE LYS GLN GLY THR SER TYR ARG THR ALA TYR GLY ILE SEQRES 29 B 547 GLU ALA ILE LYS SER LEU THR ARG ASN TYR PHE MET GLU SEQRES 30 B 547 ALA GLU TRP ARG GLU LYS LYS TYR THR PRO THR THR ASP SEQRES 31 B 547 GLU HIS MET ARG LEU ALA LEU LYS THR CYS GLY TYR THR SEQRES 32 B 547 SER LEU ILE ILE ILE SER PHE LEU GLY MET GLY GLU VAL SEQRES 33 B 547 VAL LYS ARG GLU ALA PHE ASP TRP VAL LEU SER GLU PRO SEQRES 34 B 547 ASP PHE VAL LYS ALA SER LEU THR ILE ASN ARG LEU VAL SEQRES 35 B 547 ASP ASP ILE VAL GLY HIS GLU ASP GLU GLN LYS ARG ASN SEQRES 36 B 547 HIS VAL VAL SER SER VAL GLU CYS TYR VAL GLN GLU SER SEQRES 37 B 547 LYS THR SER ARG GLU ASP ALA VAL TYR GLU LEU ASN SER SEQRES 38 B 547 ARG VAL GLU SER THR TRP LYS ASP LEU ASN GLU GLY PHE SEQRES 39 B 547 LEU LYS PRO THR LYS PHE PRO SER PRO LEU LEU TYR ARG SEQRES 40 B 547 VAL LEU ASN TYR SER ARG VAL ILE GLU VAL MET TYR THR SEQRES 41 B 547 LYS GLY ASP TRP TYR THR ASN VAL GLY PRO GLU MET GLN SEQRES 42 B 547 ASP TYR ILE ARG GLN LEU LEU ILE ASP PRO VAL ASN VAL SEQRES 43 B 547 GLU HET PO4 A 601 5 HET PO4 B 601 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *715(H2 O) HELIX 1 AA1 ASN A 40 SER A 73 1 34 HELIX 2 AA2 ASP A 75 GLY A 90 1 16 HELIX 3 AA3 PHE A 91 HIS A 94 5 4 HELIX 4 AA4 PHE A 95 LYS A 115 1 21 HELIX 5 AA5 ASP A 119 GLN A 133 1 15 HELIX 6 AA6 SER A 138 LYS A 146 5 9 HELIX 7 AA7 ASN A 156 HIS A 171 1 16 HELIX 8 AA8 GLU A 177 LEU A 195 1 19 HELIX 9 AA9 PRO A 196 LEU A 198 5 3 HELIX 10 AB1 PRO A 201 GLN A 212 1 12 HELIX 11 AB2 LEU A 219 TYR A 234 1 16 HELIX 12 AB3 ASP A 238 ASP A 271 1 34 HELIX 13 AB4 ASP A 271 LEU A 276 1 6 HELIX 14 AB5 ARG A 282 TYR A 294 1 13 HELIX 15 AB6 GLU A 296 GLU A 298 5 3 HELIX 16 AB7 TYR A 299 ALA A 322 1 24 HELIX 17 AB8 THR A 325 TRP A 339 1 15 HELIX 18 AB9 SER A 340 LEU A 347 5 8 HELIX 19 AC1 PRO A 348 GLY A 373 1 26 HELIX 20 AC2 TYR A 376 LYS A 401 1 26 HELIX 21 AC3 ARG A 412 LYS A 416 1 5 HELIX 22 AC4 CYS A 418 LEU A 429 1 12 HELIX 23 AC5 LYS A 436 SER A 445 1 10 HELIX 24 AC6 PRO A 447 LYS A 471 1 25 HELIX 25 AC7 SER A 489 GLY A 511 1 23 HELIX 26 AC8 PRO A 519 THR A 538 1 20 HELIX 27 AC9 GLY A 547 ILE A 559 1 13 HELIX 28 AD1 ASN B 40 ASP B 53 1 14 HELIX 29 AD2 LYS B 54 SER B 73 1 20 HELIX 30 AD3 ASP B 75 LEU B 89 1 15 HELIX 31 AD4 PHE B 91 HIS B 94 5 4 HELIX 32 AD5 PHE B 95 ASP B 116 1 22 HELIX 33 AD6 ASP B 119 GLY B 134 1 16 HELIX 34 AD7 SER B 138 GLU B 143 5 6 HELIX 35 AD8 ASN B 156 HIS B 171 1 16 HELIX 36 AD9 GLU B 177 LEU B 195 1 19 HELIX 37 AE1 PRO B 196 LEU B 198 5 3 HELIX 38 AE2 PRO B 201 GLN B 212 1 12 HELIX 39 AE3 LEU B 219 GLN B 233 1 15 HELIX 40 AE4 ASP B 238 ASP B 271 1 34 HELIX 41 AE5 ASP B 271 LEU B 276 1 6 HELIX 42 AE6 ARG B 282 TYR B 294 1 13 HELIX 43 AE7 GLU B 296 GLU B 298 5 3 HELIX 44 AE8 TYR B 299 TYR B 323 1 25 HELIX 45 AE9 THR B 325 TRP B 339 1 15 HELIX 46 AF1 SER B 340 LEU B 347 5 8 HELIX 47 AF2 PRO B 348 GLY B 373 1 26 HELIX 48 AF3 TYR B 376 LYS B 401 1 26 HELIX 49 AF4 CYS B 418 LEU B 429 1 12 HELIX 50 AF5 LYS B 436 SER B 445 1 10 HELIX 51 AF6 PRO B 447 ARG B 472 1 26 HELIX 52 AF7 SER B 489 PHE B 512 1 24 HELIX 53 AF8 PRO B 519 TYR B 537 1 19 HELIX 54 AF9 GLY B 547 ILE B 559 1 13 CISPEP 1 ASN A 200 PRO A 201 0 2.30 CISPEP 2 LYS A 514 PRO A 515 0 -3.55 CISPEP 3 ASN B 200 PRO B 201 0 5.47 CISPEP 4 LYS B 514 PRO B 515 0 -6.83 CRYST1 110.551 111.703 238.270 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009046 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004197 0.00000 CONECT 8699 8700 8701 8702 8703 CONECT 8700 8699 CONECT 8701 8699 CONECT 8702 8699 CONECT 8703 8699 CONECT 8704 8705 8706 8707 8708 CONECT 8705 8704 CONECT 8706 8704 CONECT 8707 8704 CONECT 8708 8704 MASTER 454 0 2 54 0 0 0 6 9412 2 10 87 END