HEADER LYASE 28-OCT-24 9KA1 TITLE CRYSTAL STRUCTURE OF BICYCLOGERMACRENE SYNTHASE MUTANT TITLE 2 I290V/I385C/V434C/L454C/V476W/L558I COMPND MOL_ID: 1; COMPND 2 MOLECULE: BICYCLOGERMACRENE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TERPENE SYNTHASE 5,LDTPS5; COMPND 5 EC: 4.2.3.100; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYLA DULCIS; SOURCE 3 ORGANISM_TAXID: 542674; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TERPENE SYNTHASE, COMPLEX WITH MG, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.X.TIAN,S.L.FAN,X.L.CHEN,L.GUO REVDAT 1 13-MAY-26 9KA1 0 JRNL AUTH L.GUO,X.G.YAN,S.X.NIE,M.Y.GE,Y.K.LI,Y.L.LU,W.G.LI,X.C.ZHANG, JRNL AUTH 2 D.M.LIANG,Y.H.ZHAO,H.X.TANG,X.L.CHEN,S.L.FAN,Y.F.TANG, JRNL AUTH 3 J.J.QIAO,B.X.TIAN JRNL TITL ENHANCING ENZYME ACTIVITY WITH MUTATION COMBINATIONS GUIDED JRNL TITL 2 BY FEW-SHOT LEARNING AND CAUSAL INFERENCE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 53867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 5.5300 - 4.3900 1.00 3952 153 0.1808 0.1974 REMARK 3 2 4.3900 - 3.8400 1.00 3908 150 0.1787 0.2018 REMARK 3 3 3.8400 - 3.4900 1.00 3876 147 0.1986 0.2372 REMARK 3 4 3.4900 - 3.2400 1.00 3867 149 0.2185 0.2344 REMARK 3 5 3.2400 - 3.0500 1.00 3870 149 0.2324 0.2505 REMARK 3 6 3.0500 - 2.9000 1.00 3829 148 0.2404 0.2888 REMARK 3 7 2.9000 - 2.7700 0.99 3814 147 0.2491 0.3120 REMARK 3 8 2.7700 - 2.6600 0.99 3821 148 0.2586 0.3167 REMARK 3 9 2.6600 - 2.5700 0.97 3753 143 0.2751 0.3319 REMARK 3 10 2.5700 - 2.4900 0.92 3541 137 0.2819 0.3258 REMARK 3 11 2.4900 - 2.4200 0.87 3335 127 0.2827 0.3207 REMARK 3 12 2.4200 - 2.3600 0.84 3193 123 0.2915 0.3218 REMARK 3 13 2.3600 - 2.3000 0.78 2973 115 0.2928 0.3706 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : 0.042 1246 REMARK 3 PLANARITY : 0.007 1514 REMARK 3 DIHEDRAL : 5.187 1138 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1706 -1.1511 40.4801 REMARK 3 T TENSOR REMARK 3 T11: 0.3377 T22: 0.2629 REMARK 3 T33: 0.2446 T12: -0.0548 REMARK 3 T13: -0.0554 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 1.3005 L22: 1.8085 REMARK 3 L33: 2.1884 L12: 0.1306 REMARK 3 L13: 0.4962 L23: -0.1939 REMARK 3 S TENSOR REMARK 3 S11: -0.1802 S12: -0.0388 S13: 0.2691 REMARK 3 S21: 0.0097 S22: 0.0041 S23: -0.0127 REMARK 3 S31: -0.2805 S32: 0.0463 S33: 0.1882 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.4222 -14.3875 10.7939 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2016 REMARK 3 T33: 0.2116 T12: -0.0228 REMARK 3 T13: 0.0187 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6192 L22: 0.8041 REMARK 3 L33: 3.3606 L12: -0.2605 REMARK 3 L13: 0.3897 L23: 0.0150 REMARK 3 S TENSOR REMARK 3 S11: 0.1007 S12: 0.1279 S13: 0.0187 REMARK 3 S21: -0.1914 S22: -0.1181 S23: -0.0323 REMARK 3 S31: 0.4124 S32: -0.0153 S33: -0.0179 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 512 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1177 2.4085 16.9929 REMARK 3 T TENSOR REMARK 3 T11: 0.4833 T22: 0.5167 REMARK 3 T33: 0.4163 T12: -0.0731 REMARK 3 T13: -0.0011 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 0.5551 L22: 2.7062 REMARK 3 L33: 2.1416 L12: 0.8482 REMARK 3 L13: 0.7750 L23: -0.1878 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: 0.2532 S13: -0.1985 REMARK 3 S21: 0.1688 S22: -0.1526 S23: -0.5666 REMARK 3 S31: -0.3491 S32: 0.6694 S33: 0.0944 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 513 THROUGH 565 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3684 -9.0034 26.6026 REMARK 3 T TENSOR REMARK 3 T11: 0.3480 T22: 0.3002 REMARK 3 T33: 0.2532 T12: -0.0115 REMARK 3 T13: -0.0062 T23: 0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.9640 L22: 2.1137 REMARK 3 L33: 1.3480 L12: -0.6272 REMARK 3 L13: 0.4352 L23: 0.3972 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.1168 S13: 0.1040 REMARK 3 S21: 0.1655 S22: 0.0865 S23: -0.1876 REMARK 3 S31: -0.0605 S32: 0.1503 S33: 0.0462 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4797 -42.8189 44.2994 REMARK 3 T TENSOR REMARK 3 T11: 0.3307 T22: 0.2340 REMARK 3 T33: 0.2634 T12: 0.0352 REMARK 3 T13: -0.0500 T23: 0.0642 REMARK 3 L TENSOR REMARK 3 L11: 2.0805 L22: 2.0692 REMARK 3 L33: 2.3167 L12: 0.5078 REMARK 3 L13: 0.7770 L23: 0.5497 REMARK 3 S TENSOR REMARK 3 S11: -0.2113 S12: -0.1684 S13: 0.2369 REMARK 3 S21: -0.1896 S22: 0.0242 S23: 0.3102 REMARK 3 S31: -0.3253 S32: -0.1457 S33: 0.1619 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.3446 -46.3464 47.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.3191 T22: 0.4134 REMARK 3 T33: 0.2888 T12: -0.0708 REMARK 3 T13: -0.0574 T23: 0.0526 REMARK 3 L TENSOR REMARK 3 L11: 1.7880 L22: 2.9646 REMARK 3 L33: 2.1630 L12: -0.1364 REMARK 3 L13: -0.8337 L23: -0.5025 REMARK 3 S TENSOR REMARK 3 S11: -0.1599 S12: -0.1381 S13: -0.0082 REMARK 3 S21: 0.1295 S22: -0.0840 S23: -0.5518 REMARK 3 S31: -0.1443 S32: 0.6443 S33: 0.2067 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 198 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9269 -53.4162 48.2217 REMARK 3 T TENSOR REMARK 3 T11: 0.2838 T22: 0.3022 REMARK 3 T33: 0.2491 T12: -0.0132 REMARK 3 T13: -0.0820 T23: 0.0540 REMARK 3 L TENSOR REMARK 3 L11: 0.5260 L22: 0.5426 REMARK 3 L33: 0.8000 L12: -0.1320 REMARK 3 L13: 0.0309 L23: -0.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.1944 S12: 0.0448 S13: -0.1448 REMARK 3 S21: -0.1453 S22: 0.1971 S23: 0.2564 REMARK 3 S31: 0.3492 S32: -0.2908 S33: -0.0670 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 239 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4946 -51.6785 17.8042 REMARK 3 T TENSOR REMARK 3 T11: 0.3039 T22: 0.1958 REMARK 3 T33: 0.2787 T12: -0.0414 REMARK 3 T13: -0.0362 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.6873 L22: 0.6144 REMARK 3 L33: 3.3425 L12: 0.0263 REMARK 3 L13: -0.0074 L23: -0.5769 REMARK 3 S TENSOR REMARK 3 S11: -0.0007 S12: 0.0439 S13: -0.0523 REMARK 3 S21: -0.3055 S22: -0.0162 S23: -0.0377 REMARK 3 S31: -0.0331 S32: -0.1888 S33: 0.0117 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 399 THROUGH 512 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3951 -47.5894 22.0912 REMARK 3 T TENSOR REMARK 3 T11: 0.4822 T22: 0.4768 REMARK 3 T33: 0.3163 T12: -0.0569 REMARK 3 T13: 0.0355 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.5678 L22: 0.4904 REMARK 3 L33: 2.0093 L12: 0.6896 REMARK 3 L13: 1.3180 L23: 0.1960 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.3208 S13: -0.2430 REMARK 3 S21: -0.3163 S22: 0.0544 S23: -0.1891 REMARK 3 S31: -0.1891 S32: 0.5547 S33: -0.0266 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 513 THROUGH 565 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4811 -52.3678 33.3703 REMARK 3 T TENSOR REMARK 3 T11: 0.3963 T22: 0.2512 REMARK 3 T33: 0.3143 T12: -0.0280 REMARK 3 T13: -0.0053 T23: 0.0519 REMARK 3 L TENSOR REMARK 3 L11: 1.4978 L22: 1.4057 REMARK 3 L33: 1.0796 L12: 1.0256 REMARK 3 L13: 0.4513 L23: 0.0666 REMARK 3 S TENSOR REMARK 3 S11: 0.0343 S12: -0.0652 S13: -0.1179 REMARK 3 S21: 0.1261 S22: -0.0829 S23: 0.0668 REMARK 3 S31: -0.1470 S32: 0.0116 S33: -0.0097 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 02-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300052995. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53920 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 31.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3G4D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG4000, 0.1M NA CITRATE PH 5.4, REMARK 280 0.2M NAAC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.16750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 116.98700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.46950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 116.98700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.16750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.46950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 LEU A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 GLN A 6 REMARK 465 ILE A 7 REMARK 465 SER A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 LEU A 14 REMARK 465 GLN A 15 REMARK 465 ASP A 16 REMARK 465 VAL A 17 REMARK 465 THR A 18 REMARK 465 ARG A 19 REMARK 465 ASN A 20 REMARK 465 ILE A 21 REMARK 465 THR A 22 REMARK 465 ARG A 23 REMARK 465 PRO A 24 REMARK 465 LEU A 25 REMARK 465 TYR A 403 REMARK 465 THR A 404 REMARK 465 PRO A 405 REMARK 465 THR A 406 REMARK 465 THR A 407 REMARK 465 ASP A 408 REMARK 465 GLU A 409 REMARK 465 HIS A 410 REMARK 465 MET A 411 REMARK 465 ARG A 412 REMARK 465 LEU A 413 REMARK 465 ALA A 414 REMARK 465 LEU A 415 REMARK 465 ASP A 468 REMARK 465 GLU A 469 REMARK 465 GLN A 470 REMARK 465 LYS A 471 REMARK 465 ARG A 472 REMARK 465 ASN A 473 REMARK 465 HIS A 474 REMARK 465 VAL A 475 REMARK 465 TRP A 476 REMARK 465 SER A 477 REMARK 465 SER A 478 REMARK 465 VAL A 479 REMARK 465 GLU A 480 REMARK 465 CYS A 481 REMARK 465 TYR A 482 REMARK 465 VAL A 483 REMARK 465 GLN A 484 REMARK 465 GLU A 485 REMARK 465 SER A 486 REMARK 465 LYS A 487 REMARK 465 THR A 488 REMARK 465 SER A 489 REMARK 465 ARG A 490 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 LEU B 3 REMARK 465 ALA B 4 REMARK 465 LYS B 5 REMARK 465 GLN B 6 REMARK 465 ILE B 7 REMARK 465 SER B 8 REMARK 465 VAL B 9 REMARK 465 VAL B 10 REMARK 465 ASP B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 LEU B 14 REMARK 465 GLN B 15 REMARK 465 ASP B 16 REMARK 465 VAL B 17 REMARK 465 THR B 18 REMARK 465 ARG B 19 REMARK 465 ASN B 20 REMARK 465 ILE B 21 REMARK 465 THR B 404 REMARK 465 PRO B 405 REMARK 465 THR B 406 REMARK 465 THR B 407 REMARK 465 ASP B 408 REMARK 465 GLU B 409 REMARK 465 HIS B 410 REMARK 465 MET B 411 REMARK 465 ARG B 412 REMARK 465 LEU B 413 REMARK 465 ALA B 414 REMARK 465 LEU B 415 REMARK 465 GLU B 469 REMARK 465 GLN B 470 REMARK 465 LYS B 471 REMARK 465 ARG B 472 REMARK 465 ASN B 473 REMARK 465 HIS B 474 REMARK 465 VAL B 475 REMARK 465 TRP B 476 REMARK 465 SER B 477 REMARK 465 SER B 478 REMARK 465 VAL B 479 REMARK 465 GLU B 480 REMARK 465 CYS B 481 REMARK 465 TYR B 482 REMARK 465 VAL B 483 REMARK 465 GLN B 484 REMARK 465 GLU B 485 REMARK 465 SER B 486 REMARK 465 LYS B 487 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 143 NH2 ARG B 36 1565 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 50 19.97 59.03 REMARK 500 PHE A 145 49.19 -83.10 REMARK 500 ASN A 151 -132.22 55.31 REMARK 500 LEU A 154 78.85 -106.67 REMARK 500 GLU A 177 78.47 -105.28 REMARK 500 ARG A 282 46.50 -140.13 REMARK 500 THR A 417 -68.98 -96.68 REMARK 500 ILE A 559 -61.13 -96.58 REMARK 500 ARG B 136 57.88 -94.13 REMARK 500 ASN B 151 -128.05 54.53 REMARK 500 GLU B 177 75.25 -102.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 720 DISTANCE = 7.50 ANGSTROMS DBREF 9KA1 A 1 565 UNP J7LMP2 TPS5_PHYDL 1 565 DBREF 9KA1 B 1 565 UNP J7LMP2 TPS5_PHYDL 1 565 SEQADV 9KA1 VAL A 290 UNP J7LMP2 ILE 290 ENGINEERED MUTATION SEQADV 9KA1 CYS A 385 UNP J7LMP2 ILE 385 ENGINEERED MUTATION SEQADV 9KA1 CYS A 434 UNP J7LMP2 VAL 434 ENGINEERED MUTATION SEQADV 9KA1 CYS A 454 UNP J7LMP2 LEU 454 ENGINEERED MUTATION SEQADV 9KA1 TRP A 476 UNP J7LMP2 VAL 476 ENGINEERED MUTATION SEQADV 9KA1 ILE A 558 UNP J7LMP2 LEU 558 ENGINEERED MUTATION SEQADV 9KA1 VAL B 290 UNP J7LMP2 ILE 290 ENGINEERED MUTATION SEQADV 9KA1 CYS B 385 UNP J7LMP2 ILE 385 ENGINEERED MUTATION SEQADV 9KA1 CYS B 434 UNP J7LMP2 VAL 434 ENGINEERED MUTATION SEQADV 9KA1 CYS B 454 UNP J7LMP2 LEU 454 ENGINEERED MUTATION SEQADV 9KA1 TRP B 476 UNP J7LMP2 VAL 476 ENGINEERED MUTATION SEQADV 9KA1 ILE B 558 UNP J7LMP2 LEU 558 ENGINEERED MUTATION SEQRES 1 A 565 MET ASP LEU ALA LYS GLN ILE SER VAL VAL ASP SER SER SEQRES 2 A 565 LEU GLN ASP VAL THR ARG ASN ILE THR ARG PRO LEU ALA SEQRES 3 A 565 ASN PHE HIS PRO ASN VAL TRP GLY ASP ARG PHE LEU LEU SEQRES 4 A 565 ASN ASN SER ASP GLN VAL GLN LEU LYS MET ASN ALA LEU SEQRES 5 A 565 ASP LYS GLU GLU ALA ILE GLU LYS LEU LYS GLU GLY VAL SEQRES 6 A 565 ARG ARG LYS LEU LYS GLU ALA SER ASN ASP TYR MET ARG SEQRES 7 A 565 LEU ILE GLN MET VAL ASP ALA ILE GLN ARG LEU GLY PHE SEQRES 8 A 565 ALA TYR HIS PHE GLU GLU GLU ILE ASP GLN ALA LEU GLN SEQRES 9 A 565 CYS LEU PHE GLU ARG HIS HIS GLU TYR CYS LYS ASP ASN SEQRES 10 A 565 HIS ASP LEU TYR ALA ASN SER LEU SER PHE ARG LEU LEU SEQRES 11 A 565 ARG GLN GLN GLY TYR ARG VAL SER CYS GLU ILE PHE GLU SEQRES 12 A 565 LYS PHE LYS ASP VAL LYS GLY ASN PHE MET LEU PRO ASN SEQRES 13 A 565 ASN GLY GLU VAL MET GLY VAL LEU GLU PHE TYR GLU ALA SEQRES 14 A 565 THR HIS LEU ARG VAL HIS GLY GLU ASP LEU LEU ASP HIS SEQRES 15 A 565 ASP PHE VAL LEU SER ARG GLU TYR LEU GLU SER VAL LEU SEQRES 16 A 565 PRO SER LEU THR ASN PRO LEU ALA GLU GLN VAL ASP HIS SEQRES 17 A 565 ALA LEU HIS GLN HIS SER ASN ARG ARG GLY LEU SER ARG SEQRES 18 A 565 LEU GLU ALA ARG HIS TYR MET PRO VAL TYR GLU GLN TYR SEQRES 19 A 565 ALA SER HIS ASP GLN TYR LEU LEU LYS LEU ALA LYS LEU SEQRES 20 A 565 ASP PHE ASN MET LEU GLN SER LEU HIS LYS GLU GLU LEU SEQRES 21 A 565 SER GLU LEU SER ARG TRP TRP LYS GLY ILE ASP VAL ALA SEQRES 22 A 565 ARG ASN LEU PRO TYR ALA ARG ASP ARG ILE VAL GLU THR SEQRES 23 A 565 TYR PHE TRP VAL LEU GLY VAL TYR PHE GLU PRO GLU TYR SEQRES 24 A 565 ALA ALA ALA ARG LYS ILE LEU VAL LYS VAL GLN SER LEU SEQRES 25 A 565 PHE SER ILE ILE ASP ASP THR PHE ASP ALA TYR GLY THR SEQRES 26 A 565 PHE GLU GLU LEU GLN ILE PHE THR GLN ALA LEU GLU ARG SEQRES 27 A 565 TRP SER ILE SER CYS LEU ASP GLN LEU PRO ASP TYR MET SEQRES 28 A 565 LYS LEU ILE TYR LYS THR VAL LEU GLU VAL TYR ASP GLU SEQRES 29 A 565 ILE GLU GLU GLU MET ILE LYS GLN GLY THR SER TYR ARG SEQRES 30 A 565 THR ALA TYR GLY ILE GLU ALA CYS LYS SER LEU THR ARG SEQRES 31 A 565 ASN TYR PHE MET GLU ALA GLU TRP ARG GLU LYS LYS TYR SEQRES 32 A 565 THR PRO THR THR ASP GLU HIS MET ARG LEU ALA LEU LYS SEQRES 33 A 565 THR CYS GLY TYR THR SER LEU ILE ILE ILE SER PHE LEU SEQRES 34 A 565 GLY MET GLY GLU CYS VAL LYS ARG GLU ALA PHE ASP TRP SEQRES 35 A 565 VAL LEU SER GLU PRO ASP PHE VAL LYS ALA SER CYS THR SEQRES 36 A 565 ILE ASN ARG LEU VAL ASP ASP ILE VAL GLY HIS GLU ASP SEQRES 37 A 565 GLU GLN LYS ARG ASN HIS VAL TRP SER SER VAL GLU CYS SEQRES 38 A 565 TYR VAL GLN GLU SER LYS THR SER ARG GLU ASP ALA VAL SEQRES 39 A 565 TYR GLU LEU ASN SER ARG VAL GLU SER THR TRP LYS ASP SEQRES 40 A 565 LEU ASN GLU GLY PHE LEU LYS PRO THR LYS PHE PRO SER SEQRES 41 A 565 PRO LEU LEU TYR ARG VAL LEU ASN TYR SER ARG VAL ILE SEQRES 42 A 565 GLU VAL MET TYR THR LYS GLY ASP TRP TYR THR ASN VAL SEQRES 43 A 565 GLY PRO GLU MET GLN ASP TYR ILE ARG GLN LEU ILE ILE SEQRES 44 A 565 ASP PRO VAL ASN VAL GLU SEQRES 1 B 565 MET ASP LEU ALA LYS GLN ILE SER VAL VAL ASP SER SER SEQRES 2 B 565 LEU GLN ASP VAL THR ARG ASN ILE THR ARG PRO LEU ALA SEQRES 3 B 565 ASN PHE HIS PRO ASN VAL TRP GLY ASP ARG PHE LEU LEU SEQRES 4 B 565 ASN ASN SER ASP GLN VAL GLN LEU LYS MET ASN ALA LEU SEQRES 5 B 565 ASP LYS GLU GLU ALA ILE GLU LYS LEU LYS GLU GLY VAL SEQRES 6 B 565 ARG ARG LYS LEU LYS GLU ALA SER ASN ASP TYR MET ARG SEQRES 7 B 565 LEU ILE GLN MET VAL ASP ALA ILE GLN ARG LEU GLY PHE SEQRES 8 B 565 ALA TYR HIS PHE GLU GLU GLU ILE ASP GLN ALA LEU GLN SEQRES 9 B 565 CYS LEU PHE GLU ARG HIS HIS GLU TYR CYS LYS ASP ASN SEQRES 10 B 565 HIS ASP LEU TYR ALA ASN SER LEU SER PHE ARG LEU LEU SEQRES 11 B 565 ARG GLN GLN GLY TYR ARG VAL SER CYS GLU ILE PHE GLU SEQRES 12 B 565 LYS PHE LYS ASP VAL LYS GLY ASN PHE MET LEU PRO ASN SEQRES 13 B 565 ASN GLY GLU VAL MET GLY VAL LEU GLU PHE TYR GLU ALA SEQRES 14 B 565 THR HIS LEU ARG VAL HIS GLY GLU ASP LEU LEU ASP HIS SEQRES 15 B 565 ASP PHE VAL LEU SER ARG GLU TYR LEU GLU SER VAL LEU SEQRES 16 B 565 PRO SER LEU THR ASN PRO LEU ALA GLU GLN VAL ASP HIS SEQRES 17 B 565 ALA LEU HIS GLN HIS SER ASN ARG ARG GLY LEU SER ARG SEQRES 18 B 565 LEU GLU ALA ARG HIS TYR MET PRO VAL TYR GLU GLN TYR SEQRES 19 B 565 ALA SER HIS ASP GLN TYR LEU LEU LYS LEU ALA LYS LEU SEQRES 20 B 565 ASP PHE ASN MET LEU GLN SER LEU HIS LYS GLU GLU LEU SEQRES 21 B 565 SER GLU LEU SER ARG TRP TRP LYS GLY ILE ASP VAL ALA SEQRES 22 B 565 ARG ASN LEU PRO TYR ALA ARG ASP ARG ILE VAL GLU THR SEQRES 23 B 565 TYR PHE TRP VAL LEU GLY VAL TYR PHE GLU PRO GLU TYR SEQRES 24 B 565 ALA ALA ALA ARG LYS ILE LEU VAL LYS VAL GLN SER LEU SEQRES 25 B 565 PHE SER ILE ILE ASP ASP THR PHE ASP ALA TYR GLY THR SEQRES 26 B 565 PHE GLU GLU LEU GLN ILE PHE THR GLN ALA LEU GLU ARG SEQRES 27 B 565 TRP SER ILE SER CYS LEU ASP GLN LEU PRO ASP TYR MET SEQRES 28 B 565 LYS LEU ILE TYR LYS THR VAL LEU GLU VAL TYR ASP GLU SEQRES 29 B 565 ILE GLU GLU GLU MET ILE LYS GLN GLY THR SER TYR ARG SEQRES 30 B 565 THR ALA TYR GLY ILE GLU ALA CYS LYS SER LEU THR ARG SEQRES 31 B 565 ASN TYR PHE MET GLU ALA GLU TRP ARG GLU LYS LYS TYR SEQRES 32 B 565 THR PRO THR THR ASP GLU HIS MET ARG LEU ALA LEU LYS SEQRES 33 B 565 THR CYS GLY TYR THR SER LEU ILE ILE ILE SER PHE LEU SEQRES 34 B 565 GLY MET GLY GLU CYS VAL LYS ARG GLU ALA PHE ASP TRP SEQRES 35 B 565 VAL LEU SER GLU PRO ASP PHE VAL LYS ALA SER CYS THR SEQRES 36 B 565 ILE ASN ARG LEU VAL ASP ASP ILE VAL GLY HIS GLU ASP SEQRES 37 B 565 GLU GLN LYS ARG ASN HIS VAL TRP SER SER VAL GLU CYS SEQRES 38 B 565 TYR VAL GLN GLU SER LYS THR SER ARG GLU ASP ALA VAL SEQRES 39 B 565 TYR GLU LEU ASN SER ARG VAL GLU SER THR TRP LYS ASP SEQRES 40 B 565 LEU ASN GLU GLY PHE LEU LYS PRO THR LYS PHE PRO SER SEQRES 41 B 565 PRO LEU LEU TYR ARG VAL LEU ASN TYR SER ARG VAL ILE SEQRES 42 B 565 GLU VAL MET TYR THR LYS GLY ASP TRP TYR THR ASN VAL SEQRES 43 B 565 GLY PRO GLU MET GLN ASP TYR ILE ARG GLN LEU ILE ILE SEQRES 44 B 565 ASP PRO VAL ASN VAL GLU FORMUL 3 HOH *227(H2 O) HELIX 1 AA1 ASN A 40 LYS A 48 1 9 HELIX 2 AA2 ASN A 50 SER A 73 1 24 HELIX 3 AA3 ASP A 75 LEU A 89 1 15 HELIX 4 AA4 PHE A 91 HIS A 94 5 4 HELIX 5 AA5 PHE A 95 ASP A 116 1 22 HELIX 6 AA6 ASP A 119 GLN A 133 1 15 HELIX 7 AA7 SER A 138 GLU A 143 5 6 HELIX 8 AA8 ASN A 156 THR A 170 1 15 HELIX 9 AA9 HIS A 171 ARG A 173 5 3 HELIX 10 AB1 GLU A 177 LEU A 195 1 19 HELIX 11 AB2 PRO A 196 LEU A 198 5 3 HELIX 12 AB3 PRO A 201 GLN A 212 1 12 HELIX 13 AB4 LEU A 219 GLU A 232 1 14 HELIX 14 AB5 ASP A 238 ASP A 271 1 34 HELIX 15 AB6 ASP A 271 LEU A 276 1 6 HELIX 16 AB7 ARG A 282 TYR A 294 1 13 HELIX 17 AB8 GLU A 296 GLU A 298 5 3 HELIX 18 AB9 TYR A 299 ALA A 322 1 24 HELIX 19 AC1 THR A 325 TRP A 339 1 15 HELIX 20 AC2 SER A 340 LEU A 347 5 8 HELIX 21 AC3 PRO A 348 GLY A 373 1 26 HELIX 22 AC4 TYR A 376 LYS A 402 1 27 HELIX 23 AC5 CYS A 418 LEU A 429 1 12 HELIX 24 AC6 LYS A 436 SER A 445 1 10 HELIX 25 AC7 PRO A 447 GLU A 467 1 21 HELIX 26 AC8 ASP A 492 PHE A 512 1 21 HELIX 27 AC9 PRO A 519 THR A 538 1 20 HELIX 28 AD1 GLY A 547 ILE A 559 1 13 HELIX 29 AD2 ASN B 40 SER B 73 1 34 HELIX 30 AD3 ASP B 75 GLY B 90 1 16 HELIX 31 AD4 PHE B 91 HIS B 94 5 4 HELIX 32 AD5 PHE B 95 ASP B 116 1 22 HELIX 33 AD6 ASP B 119 GLN B 133 1 15 HELIX 34 AD7 SER B 138 GLU B 143 5 6 HELIX 35 AD8 ASN B 156 THR B 170 1 15 HELIX 36 AD9 HIS B 171 ARG B 173 5 3 HELIX 37 AE1 GLU B 177 LEU B 195 1 19 HELIX 38 AE2 PRO B 196 LEU B 198 5 3 HELIX 39 AE3 PRO B 201 GLN B 212 1 12 HELIX 40 AE4 LEU B 219 GLN B 233 1 15 HELIX 41 AE5 ASP B 238 ASP B 271 1 34 HELIX 42 AE6 ASP B 271 LEU B 276 1 6 HELIX 43 AE7 ARG B 282 TYR B 294 1 13 HELIX 44 AE8 GLU B 296 GLU B 298 5 3 HELIX 45 AE9 TYR B 299 ALA B 322 1 24 HELIX 46 AF1 THR B 325 TRP B 339 1 15 HELIX 47 AF2 SER B 340 LEU B 347 5 8 HELIX 48 AF3 PRO B 348 GLY B 373 1 26 HELIX 49 AF4 TYR B 376 ARG B 399 1 24 HELIX 50 AF5 CYS B 418 LEU B 429 1 12 HELIX 51 AF6 LYS B 436 SER B 445 1 10 HELIX 52 AF7 PRO B 447 ASP B 468 1 22 HELIX 53 AF8 SER B 489 GLY B 511 1 23 HELIX 54 AF9 PRO B 519 THR B 538 1 20 HELIX 55 AG1 GLY B 547 ILE B 559 1 13 CISPEP 1 ASN A 200 PRO A 201 0 7.94 CISPEP 2 LYS A 514 PRO A 515 0 -3.04 CISPEP 3 ASN B 200 PRO B 201 0 3.67 CISPEP 4 LYS B 514 PRO B 515 0 -9.50 CRYST1 58.335 90.939 233.974 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017142 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010996 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004274 0.00000 MASTER 536 0 0 55 0 0 0 6 8688 2 0 88 END