data_9KAP # _entry.id 9KAP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9KAP pdb_00009kap 10.2210/pdb9kap/pdb WWPDB D_1300053035 ? ? EMDB EMD-62213 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-06-11 ? 2 'Structure model' 1 1 2025-06-25 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation_author.identifier_ORCID' 5 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9KAP _pdbx_database_status.recvd_initial_deposition_date 2024-10-29 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of glycopeptide fibril' _pdbx_database_related.db_id EMD-62213 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email xiawc@sioc.ac.cn _pdbx_contact_author.name_first Cong _pdbx_contact_author.name_last Liu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3425-6672 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Xia, W.C.' 1 ? 'Liu, C.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_id_ASTM JACSAT _citation.journal_id_CSD ? _citation.journal_id_ISSN 1520-5126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 147 _citation.language ? _citation.page_first 20132 _citation.page_last 20143 _citation.title 'Design and Structural Elucidation of Glycopeptide Fibrils: Emulating Glycosaminoglycan Functions for Biomedical Applications.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacs.5c07039 _citation.pdbx_database_id_PubMed 40448703 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Xia, W.' 1 ? primary 'Xu, Z.' 2 ? primary 'Dong, H.' 3 ? primary 'Zhang, S.' 4 ? primary 'He, C.' 5 ? primary 'Li, D.' 6 ? primary 'Sun, B.' 7 ? primary 'Dai, B.' 8 ? primary 'Dong, S.' 9 ? primary 'Liu, C.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn TYR-TYR-CYS-TYR-TYR 773.853 12 ? ? ? ? 2 non-polymer syn 'beta-D-glucopyranuronic acid' 194.139 12 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code YYCYY _entity_poly.pdbx_seq_one_letter_code_can YYCYY _entity_poly.pdbx_strand_id A,B,E,F,I,J,M,N,Q,R,U,V _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'beta-D-glucopyranuronic acid' _pdbx_entity_nonpoly.comp_id BDP # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 TYR n 1 2 TYR n 1 3 CYS n 1 4 TYR n 1 5 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 5 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BDP 'D-saccharide, beta linking' . 'beta-D-glucopyranuronic acid' 'beta-D-glucuronic acid; D-glucuronic acid; glucuronic acid' 'C6 H10 O7' 194.139 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BDP 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpAb BDP 'COMMON NAME' GMML 1.0 'b-D-glucopyranuronic acid' BDP 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpA BDP 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcA # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 TYR 1 1 1 TYR TYR A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 CYS 3 3 3 CYS CYS A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 TYR 5 5 5 TYR TYR A . n B 1 1 TYR 1 1 1 TYR TYR B . n B 1 2 TYR 2 2 2 TYR TYR B . n B 1 3 CYS 3 3 3 CYS CYS B . n B 1 4 TYR 4 4 4 TYR TYR B . n B 1 5 TYR 5 5 5 TYR TYR B . n C 1 1 TYR 1 1 1 TYR TYR E . n C 1 2 TYR 2 2 2 TYR TYR E . n C 1 3 CYS 3 3 3 CYS CYS E . n C 1 4 TYR 4 4 4 TYR TYR E . n C 1 5 TYR 5 5 5 TYR TYR E . n D 1 1 TYR 1 1 1 TYR TYR F . n D 1 2 TYR 2 2 2 TYR TYR F . n D 1 3 CYS 3 3 3 CYS CYS F . n D 1 4 TYR 4 4 4 TYR TYR F . n D 1 5 TYR 5 5 5 TYR TYR F . n E 1 1 TYR 1 1 1 TYR TYR I . n E 1 2 TYR 2 2 2 TYR TYR I . n E 1 3 CYS 3 3 3 CYS CYS I . n E 1 4 TYR 4 4 4 TYR TYR I . n E 1 5 TYR 5 5 5 TYR TYR I . n F 1 1 TYR 1 1 1 TYR TYR J . n F 1 2 TYR 2 2 2 TYR TYR J . n F 1 3 CYS 3 3 3 CYS CYS J . n F 1 4 TYR 4 4 4 TYR TYR J . n F 1 5 TYR 5 5 5 TYR TYR J . n G 1 1 TYR 1 1 1 TYR TYR M . n G 1 2 TYR 2 2 2 TYR TYR M . n G 1 3 CYS 3 3 3 CYS CYS M . n G 1 4 TYR 4 4 4 TYR TYR M . n G 1 5 TYR 5 5 5 TYR TYR M . n H 1 1 TYR 1 1 1 TYR TYR N . n H 1 2 TYR 2 2 2 TYR TYR N . n H 1 3 CYS 3 3 3 CYS CYS N . n H 1 4 TYR 4 4 4 TYR TYR N . n H 1 5 TYR 5 5 5 TYR TYR N . n I 1 1 TYR 1 1 1 TYR TYR Q . n I 1 2 TYR 2 2 2 TYR TYR Q . n I 1 3 CYS 3 3 3 CYS CYS Q . n I 1 4 TYR 4 4 4 TYR TYR Q . n I 1 5 TYR 5 5 5 TYR TYR Q . n J 1 1 TYR 1 1 1 TYR TYR R . n J 1 2 TYR 2 2 2 TYR TYR R . n J 1 3 CYS 3 3 3 CYS CYS R . n J 1 4 TYR 4 4 4 TYR TYR R . n J 1 5 TYR 5 5 5 TYR TYR R . n K 1 1 TYR 1 1 1 TYR TYR U . n K 1 2 TYR 2 2 2 TYR TYR U . n K 1 3 CYS 3 3 3 CYS CYS U . n K 1 4 TYR 4 4 4 TYR TYR U . n K 1 5 TYR 5 5 5 TYR TYR U . n L 1 1 TYR 1 1 1 TYR TYR V . n L 1 2 TYR 2 2 2 TYR TYR V . n L 1 3 CYS 3 3 3 CYS CYS V . n L 1 4 TYR 4 4 4 TYR TYR V . n L 1 5 TYR 5 5 5 TYR TYR V . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id BDP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id BDP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 BDP 1 101 6 BDP GCA A . N 2 BDP 1 101 6 BDP GCA B . O 2 BDP 1 101 6 BDP GCA E . P 2 BDP 1 101 6 BDP GCA F . Q 2 BDP 1 101 6 BDP GCA I . R 2 BDP 1 101 6 BDP GCA J . S 2 BDP 1 101 6 BDP GCA M . T 2 BDP 1 101 6 BDP GCA N . U 2 BDP 1 101 6 BDP GCA Q . V 2 BDP 1 101 6 BDP GCA R . W 2 BDP 1 101 6 BDP GCA U . X 2 BDP 1 101 6 BDP GCA V . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 4 ? OH ? A TYR 4 OH 2 1 Y 1 B TYR 4 ? OH ? B TYR 4 OH 3 1 Y 1 E TYR 4 ? OH ? C TYR 4 OH 4 1 Y 1 F TYR 4 ? OH ? D TYR 4 OH 5 1 Y 1 I TYR 4 ? OH ? E TYR 4 OH 6 1 Y 1 J TYR 4 ? OH ? F TYR 4 OH 7 1 Y 1 M TYR 4 ? OH ? G TYR 4 OH 8 1 Y 1 N TYR 4 ? OH ? H TYR 4 OH 9 1 Y 1 Q TYR 4 ? OH ? I TYR 4 OH 10 1 Y 1 R TYR 4 ? OH ? J TYR 4 OH 11 1 Y 1 U TYR 4 ? OH ? K TYR 4 OH 12 1 Y 1 V TYR 4 ? OH ? L TYR 4 OH # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9KAP _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9KAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9KAP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9KAP _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.087 ? 840 ? f_bond_d ? ? ? 'ELECTRON MICROSCOPY' ? 2.995 ? 1152 ? f_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 18.465 ? 204 ? f_dihedral_angle_d ? ? ? 'ELECTRON MICROSCOPY' ? 0.165 ? 120 ? f_chiral_restr ? ? ? 'ELECTRON MICROSCOPY' ? 0.015 ? 120 ? f_plane_restr ? ? ? # _struct.entry_id 9KAP _struct.title 'Cryo-EM structure of glycopeptide fibril' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9KAP _struct_keywords.text 'helical fibril, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? J N N 1 ? K N N 1 ? L N N 1 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 2 ? Q N N 2 ? R N N 2 ? S N N 2 ? T N N 2 ? U N N 2 ? V N N 2 ? W N N 2 ? X N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9KAP _struct_ref.pdbx_db_accession 9KAP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9KAP A 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 2 1 9KAP B 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 3 1 9KAP E 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 4 1 9KAP F 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 5 1 9KAP I 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 6 1 9KAP J 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 7 1 9KAP M 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 8 1 9KAP N 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 9 1 9KAP Q 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 10 1 9KAP R 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 11 1 9KAP U 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 12 1 9KAP V 1 ? 5 ? 9KAP 1 ? 5 ? 1 5 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 B CYS 3 SG ? ? A CYS 3 B CYS 3 1_555 ? ? ? ? ? ? ? 2.094 ? ? disulf2 disulf ? ? C CYS 3 SG ? ? ? 1_555 D CYS 3 SG ? ? E CYS 3 F CYS 3 1_555 ? ? ? ? ? ? ? 2.094 ? ? disulf3 disulf ? ? E CYS 3 SG ? ? ? 1_555 F CYS 3 SG ? ? I CYS 3 J CYS 3 1_555 ? ? ? ? ? ? ? 2.093 ? ? disulf4 disulf ? ? G CYS 3 SG ? ? ? 1_555 H CYS 3 SG ? ? M CYS 3 N CYS 3 1_555 ? ? ? ? ? ? ? 2.094 ? ? disulf5 disulf ? ? I CYS 3 SG ? ? ? 1_555 J CYS 3 SG ? ? Q CYS 3 R CYS 3 1_555 ? ? ? ? ? ? ? 2.094 ? ? disulf6 disulf ? ? K CYS 3 SG ? ? ? 1_555 L CYS 3 SG ? ? U CYS 3 V CYS 3 1_555 ? ? ? ? ? ? ? 2.095 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 3 ? CYS B 3 ? CYS A 3 ? 1_555 CYS B 3 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS C 3 ? CYS D 3 ? CYS E 3 ? 1_555 CYS F 3 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS E 3 ? CYS F 3 ? CYS I 3 ? 1_555 CYS J 3 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS G 3 ? CYS H 3 ? CYS M 3 ? 1_555 CYS N 3 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS I 3 ? CYS J 3 ? CYS Q 3 ? 1_555 CYS R 3 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS K 3 ? CYS L 3 ? CYS U 3 ? 1_555 CYS V 3 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TYR A 2 ? TYR A 4 ? TYR A 2 TYR A 4 AA1 2 TYR B 2 ? TYR B 4 ? TYR B 2 TYR B 4 AA1 3 TYR C 2 ? TYR C 4 ? TYR E 2 TYR E 4 AA1 4 TYR D 2 ? TYR D 4 ? TYR F 2 TYR F 4 AA2 1 TYR E 2 ? TYR E 4 ? TYR I 2 TYR I 4 AA2 2 TYR F 2 ? TYR F 4 ? TYR J 2 TYR J 4 AA2 3 TYR G 2 ? TYR G 4 ? TYR M 2 TYR M 4 AA2 4 TYR H 2 ? TYR H 4 ? TYR N 2 TYR N 4 AA3 1 TYR I 2 ? TYR I 4 ? TYR Q 2 TYR Q 4 AA3 2 TYR J 2 ? TYR J 4 ? TYR R 2 TYR R 4 AA3 3 TYR K 2 ? TYR K 4 ? TYR U 2 TYR U 4 AA3 4 TYR L 2 ? TYR L 4 ? TYR V 2 TYR V 4 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N TYR A 2 ? N TYR A 2 O TYR B 4 ? O TYR B 4 AA1 2 3 N CYS B 3 ? N CYS B 3 O CYS C 3 ? O CYS E 3 AA1 3 4 N TYR C 2 ? N TYR E 2 O TYR D 4 ? O TYR F 4 AA2 1 2 N TYR E 2 ? N TYR I 2 O TYR F 4 ? O TYR J 4 AA2 2 3 N CYS F 3 ? N CYS J 3 O CYS G 3 ? O CYS M 3 AA2 3 4 N TYR G 2 ? N TYR M 2 O TYR H 4 ? O TYR N 4 AA3 1 2 N TYR I 2 ? N TYR Q 2 O TYR J 4 ? O TYR R 4 AA3 2 3 N CYS J 3 ? N CYS R 3 O CYS K 3 ? O CYS U 3 AA3 3 4 N TYR K 2 ? N TYR U 2 O TYR L 4 ? O TYR V 4 # _pdbx_entry_details.entry_id 9KAP _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 CZ U TYR 4 ? ? O1 U BDP 101 ? ? 1.36 2 1 CZ I TYR 4 ? ? O1 I BDP 101 ? ? 1.36 3 1 CZ B TYR 4 ? ? O1 B BDP 101 ? ? 1.36 4 1 CZ J TYR 4 ? ? O1 J BDP 101 ? ? 1.36 5 1 CZ R TYR 4 ? ? O1 R BDP 101 ? ? 1.36 6 1 CZ E TYR 4 ? ? O1 E BDP 101 ? ? 1.36 7 1 CZ Q TYR 4 ? ? O1 Q BDP 101 ? ? 1.36 8 1 CZ A TYR 4 ? ? O1 A BDP 101 ? ? 1.36 9 1 CZ F TYR 4 ? ? O1 F BDP 101 ? ? 1.36 10 1 CZ V TYR 4 ? ? O1 V BDP 101 ? ? 1.36 11 1 CZ M TYR 4 ? ? O1 M BDP 101 ? ? 1.36 12 1 CZ N TYR 4 ? ? O1 N BDP 101 ? ? 1.36 13 1 CE2 I TYR 4 ? ? O5 I BDP 101 ? ? 2.18 14 1 CE2 A TYR 4 ? ? O5 A BDP 101 ? ? 2.18 15 1 CE2 U TYR 4 ? ? O5 U BDP 101 ? ? 2.18 16 1 CE2 E TYR 4 ? ? O5 E BDP 101 ? ? 2.18 17 1 CE2 Q TYR 4 ? ? O5 Q BDP 101 ? ? 2.18 18 1 CE2 M TYR 4 ? ? O5 M BDP 101 ? ? 2.18 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A TYR 1 ? ? CG A TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 2 1 CG A TYR 1 ? ? CD2 A TYR 1 ? ? 1.271 1.387 -0.116 0.013 N 3 1 CG A TYR 1 ? ? CD1 A TYR 1 ? ? 1.256 1.387 -0.131 0.013 N 4 1 CD1 A TYR 1 ? ? CE1 A TYR 1 ? ? 1.225 1.389 -0.164 0.015 N 5 1 CE1 A TYR 1 ? ? CZ A TYR 1 ? ? 1.218 1.381 -0.163 0.013 N 6 1 CZ A TYR 1 ? ? CE2 A TYR 1 ? ? 1.237 1.381 -0.144 0.013 N 7 1 CE2 A TYR 1 ? ? CD2 A TYR 1 ? ? 1.231 1.389 -0.158 0.015 N 8 1 CB A TYR 2 ? ? CG A TYR 2 ? ? 1.417 1.512 -0.095 0.015 N 9 1 CG A TYR 2 ? ? CD2 A TYR 2 ? ? 1.284 1.387 -0.103 0.013 N 10 1 CG A TYR 2 ? ? CD1 A TYR 2 ? ? 1.286 1.387 -0.101 0.013 N 11 1 CD1 A TYR 2 ? ? CE1 A TYR 2 ? ? 1.224 1.389 -0.165 0.015 N 12 1 CE1 A TYR 2 ? ? CZ A TYR 2 ? ? 1.232 1.381 -0.149 0.013 N 13 1 CZ A TYR 2 ? ? CE2 A TYR 2 ? ? 1.262 1.381 -0.119 0.013 N 14 1 CE2 A TYR 2 ? ? CD2 A TYR 2 ? ? 1.244 1.389 -0.145 0.015 N 15 1 CB A TYR 5 ? ? CG A TYR 5 ? ? 1.372 1.512 -0.140 0.015 N 16 1 CG A TYR 5 ? ? CD2 A TYR 5 ? ? 1.255 1.387 -0.132 0.013 N 17 1 CG A TYR 5 ? ? CD1 A TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 18 1 CD1 A TYR 5 ? ? CE1 A TYR 5 ? ? 1.183 1.389 -0.206 0.015 N 19 1 CE1 A TYR 5 ? ? CZ A TYR 5 ? ? 1.217 1.381 -0.164 0.013 N 20 1 CZ A TYR 5 ? ? CE2 A TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 21 1 CE2 A TYR 5 ? ? CD2 A TYR 5 ? ? 1.219 1.389 -0.170 0.015 N 22 1 CB B TYR 1 ? ? CG B TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 23 1 CG B TYR 1 ? ? CD2 B TYR 1 ? ? 1.272 1.387 -0.115 0.013 N 24 1 CG B TYR 1 ? ? CD1 B TYR 1 ? ? 1.257 1.387 -0.130 0.013 N 25 1 CD1 B TYR 1 ? ? CE1 B TYR 1 ? ? 1.224 1.389 -0.165 0.015 N 26 1 CE1 B TYR 1 ? ? CZ B TYR 1 ? ? 1.217 1.381 -0.164 0.013 N 27 1 CZ B TYR 1 ? ? CE2 B TYR 1 ? ? 1.238 1.381 -0.143 0.013 N 28 1 CE2 B TYR 1 ? ? CD2 B TYR 1 ? ? 1.231 1.389 -0.158 0.015 N 29 1 CB B TYR 2 ? ? CG B TYR 2 ? ? 1.417 1.512 -0.095 0.015 N 30 1 CG B TYR 2 ? ? CD2 B TYR 2 ? ? 1.284 1.387 -0.103 0.013 N 31 1 CG B TYR 2 ? ? CD1 B TYR 2 ? ? 1.287 1.387 -0.100 0.013 N 32 1 CD1 B TYR 2 ? ? CE1 B TYR 2 ? ? 1.225 1.389 -0.164 0.015 N 33 1 CE1 B TYR 2 ? ? CZ B TYR 2 ? ? 1.232 1.381 -0.149 0.013 N 34 1 CZ B TYR 2 ? ? CE2 B TYR 2 ? ? 1.262 1.381 -0.119 0.013 N 35 1 CE2 B TYR 2 ? ? CD2 B TYR 2 ? ? 1.244 1.389 -0.145 0.015 N 36 1 CB B TYR 5 ? ? CG B TYR 5 ? ? 1.371 1.512 -0.141 0.015 N 37 1 CG B TYR 5 ? ? CD2 B TYR 5 ? ? 1.255 1.387 -0.132 0.013 N 38 1 CG B TYR 5 ? ? CD1 B TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 39 1 CD1 B TYR 5 ? ? CE1 B TYR 5 ? ? 1.183 1.389 -0.206 0.015 N 40 1 CE1 B TYR 5 ? ? CZ B TYR 5 ? ? 1.216 1.381 -0.165 0.013 N 41 1 CZ B TYR 5 ? ? CE2 B TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 42 1 CE2 B TYR 5 ? ? CD2 B TYR 5 ? ? 1.218 1.389 -0.171 0.015 N 43 1 CB E TYR 1 ? ? CG E TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 44 1 CG E TYR 1 ? ? CD2 E TYR 1 ? ? 1.271 1.387 -0.116 0.013 N 45 1 CG E TYR 1 ? ? CD1 E TYR 1 ? ? 1.256 1.387 -0.131 0.013 N 46 1 CD1 E TYR 1 ? ? CE1 E TYR 1 ? ? 1.226 1.389 -0.163 0.015 N 47 1 CE1 E TYR 1 ? ? CZ E TYR 1 ? ? 1.218 1.381 -0.163 0.013 N 48 1 CZ E TYR 1 ? ? CE2 E TYR 1 ? ? 1.236 1.381 -0.145 0.013 N 49 1 CE2 E TYR 1 ? ? CD2 E TYR 1 ? ? 1.232 1.389 -0.157 0.015 N 50 1 CB E TYR 2 ? ? CG E TYR 2 ? ? 1.418 1.512 -0.094 0.015 N 51 1 CG E TYR 2 ? ? CD2 E TYR 2 ? ? 1.283 1.387 -0.104 0.013 N 52 1 CG E TYR 2 ? ? CD1 E TYR 2 ? ? 1.287 1.387 -0.100 0.013 N 53 1 CD1 E TYR 2 ? ? CE1 E TYR 2 ? ? 1.224 1.389 -0.165 0.015 N 54 1 CE1 E TYR 2 ? ? CZ E TYR 2 ? ? 1.233 1.381 -0.148 0.013 N 55 1 CZ E TYR 2 ? ? CE2 E TYR 2 ? ? 1.262 1.381 -0.119 0.013 N 56 1 CE2 E TYR 2 ? ? CD2 E TYR 2 ? ? 1.244 1.389 -0.145 0.015 N 57 1 CB E TYR 5 ? ? CG E TYR 5 ? ? 1.371 1.512 -0.141 0.015 N 58 1 CG E TYR 5 ? ? CD2 E TYR 5 ? ? 1.254 1.387 -0.133 0.013 N 59 1 CG E TYR 5 ? ? CD1 E TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 60 1 CD1 E TYR 5 ? ? CE1 E TYR 5 ? ? 1.183 1.389 -0.206 0.015 N 61 1 CE1 E TYR 5 ? ? CZ E TYR 5 ? ? 1.217 1.381 -0.164 0.013 N 62 1 CZ E TYR 5 ? ? CE2 E TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 63 1 CE2 E TYR 5 ? ? CD2 E TYR 5 ? ? 1.219 1.389 -0.170 0.015 N 64 1 CB F TYR 1 ? ? CG F TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 65 1 CG F TYR 1 ? ? CD2 F TYR 1 ? ? 1.272 1.387 -0.115 0.013 N 66 1 CG F TYR 1 ? ? CD1 F TYR 1 ? ? 1.257 1.387 -0.130 0.013 N 67 1 CD1 F TYR 1 ? ? CE1 F TYR 1 ? ? 1.225 1.389 -0.164 0.015 N 68 1 CE1 F TYR 1 ? ? CZ F TYR 1 ? ? 1.217 1.381 -0.164 0.013 N 69 1 CZ F TYR 1 ? ? CE2 F TYR 1 ? ? 1.239 1.381 -0.142 0.013 N 70 1 CE2 F TYR 1 ? ? CD2 F TYR 1 ? ? 1.231 1.389 -0.158 0.015 N 71 1 CB F TYR 2 ? ? CG F TYR 2 ? ? 1.417 1.512 -0.095 0.015 N 72 1 CG F TYR 2 ? ? CD2 F TYR 2 ? ? 1.284 1.387 -0.103 0.013 N 73 1 CG F TYR 2 ? ? CD1 F TYR 2 ? ? 1.286 1.387 -0.101 0.013 N 74 1 CD1 F TYR 2 ? ? CE1 F TYR 2 ? ? 1.225 1.389 -0.164 0.015 N 75 1 CE1 F TYR 2 ? ? CZ F TYR 2 ? ? 1.232 1.381 -0.149 0.013 N 76 1 CZ F TYR 2 ? ? CE2 F TYR 2 ? ? 1.262 1.381 -0.119 0.013 N 77 1 CE2 F TYR 2 ? ? CD2 F TYR 2 ? ? 1.244 1.389 -0.145 0.015 N 78 1 CB F TYR 5 ? ? CG F TYR 5 ? ? 1.371 1.512 -0.141 0.015 N 79 1 CG F TYR 5 ? ? CD2 F TYR 5 ? ? 1.256 1.387 -0.131 0.013 N 80 1 CG F TYR 5 ? ? CD1 F TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 81 1 CD1 F TYR 5 ? ? CE1 F TYR 5 ? ? 1.183 1.389 -0.206 0.015 N 82 1 CE1 F TYR 5 ? ? CZ F TYR 5 ? ? 1.216 1.381 -0.165 0.013 N 83 1 CZ F TYR 5 ? ? CE2 F TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 84 1 CE2 F TYR 5 ? ? CD2 F TYR 5 ? ? 1.218 1.389 -0.171 0.015 N 85 1 CB I TYR 1 ? ? CG I TYR 1 ? ? 1.388 1.512 -0.124 0.015 N 86 1 CG I TYR 1 ? ? CD2 I TYR 1 ? ? 1.271 1.387 -0.116 0.013 N 87 1 CG I TYR 1 ? ? CD1 I TYR 1 ? ? 1.257 1.387 -0.130 0.013 N 88 1 CD1 I TYR 1 ? ? CE1 I TYR 1 ? ? 1.225 1.389 -0.164 0.015 N 89 1 CE1 I TYR 1 ? ? CZ I TYR 1 ? ? 1.217 1.381 -0.164 0.013 N 90 1 CZ I TYR 1 ? ? CE2 I TYR 1 ? ? 1.237 1.381 -0.144 0.013 N 91 1 CE2 I TYR 1 ? ? CD2 I TYR 1 ? ? 1.231 1.389 -0.158 0.015 N 92 1 CB I TYR 2 ? ? CG I TYR 2 ? ? 1.418 1.512 -0.094 0.015 N 93 1 CG I TYR 2 ? ? CD2 I TYR 2 ? ? 1.284 1.387 -0.103 0.013 N 94 1 CG I TYR 2 ? ? CD1 I TYR 2 ? ? 1.286 1.387 -0.101 0.013 N 95 1 CD1 I TYR 2 ? ? CE1 I TYR 2 ? ? 1.225 1.389 -0.164 0.015 N 96 1 CE1 I TYR 2 ? ? CZ I TYR 2 ? ? 1.232 1.381 -0.149 0.013 N 97 1 CZ I TYR 2 ? ? CE2 I TYR 2 ? ? 1.263 1.381 -0.118 0.013 N 98 1 CE2 I TYR 2 ? ? CD2 I TYR 2 ? ? 1.243 1.389 -0.146 0.015 N 99 1 CB I TYR 5 ? ? CG I TYR 5 ? ? 1.371 1.512 -0.141 0.015 N 100 1 CG I TYR 5 ? ? CD2 I TYR 5 ? ? 1.255 1.387 -0.132 0.013 N 101 1 CG I TYR 5 ? ? CD1 I TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 102 1 CD1 I TYR 5 ? ? CE1 I TYR 5 ? ? 1.182 1.389 -0.207 0.015 N 103 1 CE1 I TYR 5 ? ? CZ I TYR 5 ? ? 1.217 1.381 -0.164 0.013 N 104 1 CZ I TYR 5 ? ? CE2 I TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 105 1 CE2 I TYR 5 ? ? CD2 I TYR 5 ? ? 1.219 1.389 -0.170 0.015 N 106 1 CB J TYR 1 ? ? CG J TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 107 1 CG J TYR 1 ? ? CD2 J TYR 1 ? ? 1.272 1.387 -0.115 0.013 N 108 1 CG J TYR 1 ? ? CD1 J TYR 1 ? ? 1.257 1.387 -0.130 0.013 N 109 1 CD1 J TYR 1 ? ? CE1 J TYR 1 ? ? 1.225 1.389 -0.164 0.015 N 110 1 CE1 J TYR 1 ? ? CZ J TYR 1 ? ? 1.218 1.381 -0.163 0.013 N 111 1 CZ J TYR 1 ? ? CE2 J TYR 1 ? ? 1.238 1.381 -0.143 0.013 N 112 1 CE2 J TYR 1 ? ? CD2 J TYR 1 ? ? 1.231 1.389 -0.158 0.015 N 113 1 CB J TYR 2 ? ? CG J TYR 2 ? ? 1.417 1.512 -0.095 0.015 N 114 1 CG J TYR 2 ? ? CD2 J TYR 2 ? ? 1.283 1.387 -0.104 0.013 N 115 1 CG J TYR 2 ? ? CD1 J TYR 2 ? ? 1.287 1.387 -0.100 0.013 N 116 1 CD1 J TYR 2 ? ? CE1 J TYR 2 ? ? 1.226 1.389 -0.163 0.015 N 117 1 CE1 J TYR 2 ? ? CZ J TYR 2 ? ? 1.231 1.381 -0.150 0.013 N 118 1 CZ J TYR 2 ? ? CE2 J TYR 2 ? ? 1.262 1.381 -0.119 0.013 N 119 1 CE2 J TYR 2 ? ? CD2 J TYR 2 ? ? 1.244 1.389 -0.145 0.015 N 120 1 CB J TYR 5 ? ? CG J TYR 5 ? ? 1.371 1.512 -0.141 0.015 N 121 1 CG J TYR 5 ? ? CD2 J TYR 5 ? ? 1.255 1.387 -0.132 0.013 N 122 1 CG J TYR 5 ? ? CD1 J TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 123 1 CD1 J TYR 5 ? ? CE1 J TYR 5 ? ? 1.183 1.389 -0.206 0.015 N 124 1 CE1 J TYR 5 ? ? CZ J TYR 5 ? ? 1.216 1.381 -0.165 0.013 N 125 1 CZ J TYR 5 ? ? CE2 J TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 126 1 CE2 J TYR 5 ? ? CD2 J TYR 5 ? ? 1.218 1.389 -0.171 0.015 N 127 1 CB M TYR 1 ? ? CG M TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 128 1 CG M TYR 1 ? ? CD2 M TYR 1 ? ? 1.271 1.387 -0.116 0.013 N 129 1 CG M TYR 1 ? ? CD1 M TYR 1 ? ? 1.256 1.387 -0.131 0.013 N 130 1 CD1 M TYR 1 ? ? CE1 M TYR 1 ? ? 1.226 1.389 -0.163 0.015 N 131 1 CE1 M TYR 1 ? ? CZ M TYR 1 ? ? 1.218 1.381 -0.163 0.013 N 132 1 CZ M TYR 1 ? ? CE2 M TYR 1 ? ? 1.236 1.381 -0.145 0.013 N 133 1 CE2 M TYR 1 ? ? CD2 M TYR 1 ? ? 1.232 1.389 -0.157 0.015 N 134 1 CB M TYR 2 ? ? CG M TYR 2 ? ? 1.418 1.512 -0.094 0.015 N 135 1 CG M TYR 2 ? ? CD2 M TYR 2 ? ? 1.283 1.387 -0.104 0.013 N 136 1 CG M TYR 2 ? ? CD1 M TYR 2 ? ? 1.287 1.387 -0.100 0.013 N 137 1 CD1 M TYR 2 ? ? CE1 M TYR 2 ? ? 1.223 1.389 -0.166 0.015 N 138 1 CE1 M TYR 2 ? ? CZ M TYR 2 ? ? 1.233 1.381 -0.148 0.013 N 139 1 CZ M TYR 2 ? ? CE2 M TYR 2 ? ? 1.261 1.381 -0.120 0.013 N 140 1 CE2 M TYR 2 ? ? CD2 M TYR 2 ? ? 1.244 1.389 -0.145 0.015 N 141 1 CB M TYR 5 ? ? CG M TYR 5 ? ? 1.371 1.512 -0.141 0.015 N 142 1 CG M TYR 5 ? ? CD2 M TYR 5 ? ? 1.255 1.387 -0.132 0.013 N 143 1 CG M TYR 5 ? ? CD1 M TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 144 1 CD1 M TYR 5 ? ? CE1 M TYR 5 ? ? 1.182 1.389 -0.207 0.015 N 145 1 CE1 M TYR 5 ? ? CZ M TYR 5 ? ? 1.217 1.381 -0.164 0.013 N 146 1 CZ M TYR 5 ? ? CE2 M TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 147 1 CE2 M TYR 5 ? ? CD2 M TYR 5 ? ? 1.220 1.389 -0.169 0.015 N 148 1 CB N TYR 1 ? ? CG N TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 149 1 CG N TYR 1 ? ? CD2 N TYR 1 ? ? 1.272 1.387 -0.115 0.013 N 150 1 CG N TYR 1 ? ? CD1 N TYR 1 ? ? 1.256 1.387 -0.131 0.013 N 151 1 CD1 N TYR 1 ? ? CE1 N TYR 1 ? ? 1.225 1.389 -0.164 0.015 N 152 1 CE1 N TYR 1 ? ? CZ N TYR 1 ? ? 1.217 1.381 -0.164 0.013 N 153 1 CZ N TYR 1 ? ? CE2 N TYR 1 ? ? 1.239 1.381 -0.142 0.013 N 154 1 CE2 N TYR 1 ? ? CD2 N TYR 1 ? ? 1.230 1.389 -0.159 0.015 N 155 1 CB N TYR 2 ? ? CG N TYR 2 ? ? 1.418 1.512 -0.094 0.015 N 156 1 CG N TYR 2 ? ? CD2 N TYR 2 ? ? 1.284 1.387 -0.103 0.013 N 157 1 CG N TYR 2 ? ? CD1 N TYR 2 ? ? 1.287 1.387 -0.100 0.013 N 158 1 CD1 N TYR 2 ? ? CE1 N TYR 2 ? ? 1.225 1.389 -0.164 0.015 N 159 1 CE1 N TYR 2 ? ? CZ N TYR 2 ? ? 1.233 1.381 -0.148 0.013 N 160 1 CZ N TYR 2 ? ? CE2 N TYR 2 ? ? 1.262 1.381 -0.119 0.013 N 161 1 CE2 N TYR 2 ? ? CD2 N TYR 2 ? ? 1.243 1.389 -0.146 0.015 N 162 1 CB N TYR 5 ? ? CG N TYR 5 ? ? 1.370 1.512 -0.142 0.015 N 163 1 CG N TYR 5 ? ? CD2 N TYR 5 ? ? 1.257 1.387 -0.130 0.013 N 164 1 CG N TYR 5 ? ? CD1 N TYR 5 ? ? 1.259 1.387 -0.128 0.013 N 165 1 CD1 N TYR 5 ? ? CE1 N TYR 5 ? ? 1.182 1.389 -0.207 0.015 N 166 1 CE1 N TYR 5 ? ? CZ N TYR 5 ? ? 1.216 1.381 -0.165 0.013 N 167 1 CZ N TYR 5 ? ? CE2 N TYR 5 ? ? 1.251 1.381 -0.130 0.013 N 168 1 CE2 N TYR 5 ? ? CD2 N TYR 5 ? ? 1.218 1.389 -0.171 0.015 N 169 1 CB Q TYR 1 ? ? CG Q TYR 1 ? ? 1.388 1.512 -0.124 0.015 N 170 1 CG Q TYR 1 ? ? CD2 Q TYR 1 ? ? 1.271 1.387 -0.116 0.013 N 171 1 CG Q TYR 1 ? ? CD1 Q TYR 1 ? ? 1.256 1.387 -0.131 0.013 N 172 1 CD1 Q TYR 1 ? ? CE1 Q TYR 1 ? ? 1.225 1.389 -0.164 0.015 N 173 1 CE1 Q TYR 1 ? ? CZ Q TYR 1 ? ? 1.217 1.381 -0.164 0.013 N 174 1 CZ Q TYR 1 ? ? CE2 Q TYR 1 ? ? 1.237 1.381 -0.144 0.013 N 175 1 CE2 Q TYR 1 ? ? CD2 Q TYR 1 ? ? 1.231 1.389 -0.158 0.015 N 176 1 CB Q TYR 2 ? ? CG Q TYR 2 ? ? 1.418 1.512 -0.094 0.015 N 177 1 CG Q TYR 2 ? ? CD2 Q TYR 2 ? ? 1.283 1.387 -0.104 0.013 N 178 1 CG Q TYR 2 ? ? CD1 Q TYR 2 ? ? 1.287 1.387 -0.100 0.013 N 179 1 CD1 Q TYR 2 ? ? CE1 Q TYR 2 ? ? 1.225 1.389 -0.164 0.015 N 180 1 CE1 Q TYR 2 ? ? CZ Q TYR 2 ? ? 1.231 1.381 -0.150 0.013 N 181 1 CZ Q TYR 2 ? ? CE2 Q TYR 2 ? ? 1.261 1.381 -0.120 0.013 N 182 1 CE2 Q TYR 2 ? ? CD2 Q TYR 2 ? ? 1.245 1.389 -0.144 0.015 N 183 1 CB Q TYR 5 ? ? CG Q TYR 5 ? ? 1.372 1.512 -0.140 0.015 N 184 1 CG Q TYR 5 ? ? CD2 Q TYR 5 ? ? 1.255 1.387 -0.132 0.013 N 185 1 CG Q TYR 5 ? ? CD1 Q TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 186 1 CD1 Q TYR 5 ? ? CE1 Q TYR 5 ? ? 1.183 1.389 -0.206 0.015 N 187 1 CE1 Q TYR 5 ? ? CZ Q TYR 5 ? ? 1.218 1.381 -0.163 0.013 N 188 1 CZ Q TYR 5 ? ? CE2 Q TYR 5 ? ? 1.249 1.381 -0.132 0.013 N 189 1 CE2 Q TYR 5 ? ? CD2 Q TYR 5 ? ? 1.220 1.389 -0.169 0.015 N 190 1 CB R TYR 1 ? ? CG R TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 191 1 CG R TYR 1 ? ? CD2 R TYR 1 ? ? 1.272 1.387 -0.115 0.013 N 192 1 CG R TYR 1 ? ? CD1 R TYR 1 ? ? 1.257 1.387 -0.130 0.013 N 193 1 CD1 R TYR 1 ? ? CE1 R TYR 1 ? ? 1.225 1.389 -0.164 0.015 N 194 1 CE1 R TYR 1 ? ? CZ R TYR 1 ? ? 1.217 1.381 -0.164 0.013 N 195 1 CZ R TYR 1 ? ? CE2 R TYR 1 ? ? 1.238 1.381 -0.143 0.013 N 196 1 CE2 R TYR 1 ? ? CD2 R TYR 1 ? ? 1.231 1.389 -0.158 0.015 N 197 1 CB R TYR 2 ? ? CG R TYR 2 ? ? 1.418 1.512 -0.094 0.015 N 198 1 CG R TYR 2 ? ? CD2 R TYR 2 ? ? 1.283 1.387 -0.104 0.013 N 199 1 CG R TYR 2 ? ? CD1 R TYR 2 ? ? 1.287 1.387 -0.100 0.013 N 200 1 CD1 R TYR 2 ? ? CE1 R TYR 2 ? ? 1.224 1.389 -0.165 0.015 N 201 1 CE1 R TYR 2 ? ? CZ R TYR 2 ? ? 1.232 1.381 -0.149 0.013 N 202 1 CZ R TYR 2 ? ? CE2 R TYR 2 ? ? 1.263 1.381 -0.118 0.013 N 203 1 CE2 R TYR 2 ? ? CD2 R TYR 2 ? ? 1.244 1.389 -0.145 0.015 N 204 1 CB R TYR 5 ? ? CG R TYR 5 ? ? 1.372 1.512 -0.140 0.015 N 205 1 CG R TYR 5 ? ? CD2 R TYR 5 ? ? 1.255 1.387 -0.132 0.013 N 206 1 CG R TYR 5 ? ? CD1 R TYR 5 ? ? 1.259 1.387 -0.128 0.013 N 207 1 CD1 R TYR 5 ? ? CE1 R TYR 5 ? ? 1.182 1.389 -0.207 0.015 N 208 1 CE1 R TYR 5 ? ? CZ R TYR 5 ? ? 1.216 1.381 -0.165 0.013 N 209 1 CZ R TYR 5 ? ? CE2 R TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 210 1 CE2 R TYR 5 ? ? CD2 R TYR 5 ? ? 1.218 1.389 -0.171 0.015 N 211 1 CB U TYR 1 ? ? CG U TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 212 1 CG U TYR 1 ? ? CD2 U TYR 1 ? ? 1.270 1.387 -0.117 0.013 N 213 1 CG U TYR 1 ? ? CD1 U TYR 1 ? ? 1.256 1.387 -0.131 0.013 N 214 1 CD1 U TYR 1 ? ? CE1 U TYR 1 ? ? 1.226 1.389 -0.163 0.015 N 215 1 CE1 U TYR 1 ? ? CZ U TYR 1 ? ? 1.218 1.381 -0.163 0.013 N 216 1 CZ U TYR 1 ? ? CE2 U TYR 1 ? ? 1.236 1.381 -0.145 0.013 N 217 1 CE2 U TYR 1 ? ? CD2 U TYR 1 ? ? 1.232 1.389 -0.157 0.015 N 218 1 CB U TYR 2 ? ? CG U TYR 2 ? ? 1.418 1.512 -0.094 0.015 N 219 1 CG U TYR 2 ? ? CD2 U TYR 2 ? ? 1.284 1.387 -0.103 0.013 N 220 1 CG U TYR 2 ? ? CD1 U TYR 2 ? ? 1.287 1.387 -0.100 0.013 N 221 1 CD1 U TYR 2 ? ? CE1 U TYR 2 ? ? 1.225 1.389 -0.164 0.015 N 222 1 CE1 U TYR 2 ? ? CZ U TYR 2 ? ? 1.233 1.381 -0.148 0.013 N 223 1 CZ U TYR 2 ? ? CE2 U TYR 2 ? ? 1.262 1.381 -0.119 0.013 N 224 1 CE2 U TYR 2 ? ? CD2 U TYR 2 ? ? 1.244 1.389 -0.145 0.015 N 225 1 CB U TYR 5 ? ? CG U TYR 5 ? ? 1.371 1.512 -0.141 0.015 N 226 1 CG U TYR 5 ? ? CD2 U TYR 5 ? ? 1.255 1.387 -0.132 0.013 N 227 1 CG U TYR 5 ? ? CD1 U TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 228 1 CD1 U TYR 5 ? ? CE1 U TYR 5 ? ? 1.183 1.389 -0.206 0.015 N 229 1 CE1 U TYR 5 ? ? CZ U TYR 5 ? ? 1.217 1.381 -0.164 0.013 N 230 1 CZ U TYR 5 ? ? CE2 U TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 231 1 CE2 U TYR 5 ? ? CD2 U TYR 5 ? ? 1.219 1.389 -0.170 0.015 N 232 1 CB V TYR 1 ? ? CG V TYR 1 ? ? 1.387 1.512 -0.125 0.015 N 233 1 CG V TYR 1 ? ? CD2 V TYR 1 ? ? 1.272 1.387 -0.115 0.013 N 234 1 CG V TYR 1 ? ? CD1 V TYR 1 ? ? 1.257 1.387 -0.130 0.013 N 235 1 CD1 V TYR 1 ? ? CE1 V TYR 1 ? ? 1.225 1.389 -0.164 0.015 N 236 1 CE1 V TYR 1 ? ? CZ V TYR 1 ? ? 1.217 1.381 -0.164 0.013 N 237 1 CZ V TYR 1 ? ? CE2 V TYR 1 ? ? 1.239 1.381 -0.142 0.013 N 238 1 CE2 V TYR 1 ? ? CD2 V TYR 1 ? ? 1.231 1.389 -0.158 0.015 N 239 1 CB V TYR 2 ? ? CG V TYR 2 ? ? 1.417 1.512 -0.095 0.015 N 240 1 CG V TYR 2 ? ? CD2 V TYR 2 ? ? 1.283 1.387 -0.104 0.013 N 241 1 CG V TYR 2 ? ? CD1 V TYR 2 ? ? 1.287 1.387 -0.100 0.013 N 242 1 CD1 V TYR 2 ? ? CE1 V TYR 2 ? ? 1.224 1.389 -0.165 0.015 N 243 1 CE1 V TYR 2 ? ? CZ V TYR 2 ? ? 1.232 1.381 -0.149 0.013 N 244 1 CZ V TYR 2 ? ? CE2 V TYR 2 ? ? 1.262 1.381 -0.119 0.013 N 245 1 CE2 V TYR 2 ? ? CD2 V TYR 2 ? ? 1.244 1.389 -0.145 0.015 N 246 1 CB V TYR 5 ? ? CG V TYR 5 ? ? 1.372 1.512 -0.140 0.015 N 247 1 CG V TYR 5 ? ? CD2 V TYR 5 ? ? 1.257 1.387 -0.130 0.013 N 248 1 CG V TYR 5 ? ? CD1 V TYR 5 ? ? 1.260 1.387 -0.127 0.013 N 249 1 CD1 V TYR 5 ? ? CE1 V TYR 5 ? ? 1.182 1.389 -0.207 0.015 N 250 1 CE1 V TYR 5 ? ? CZ V TYR 5 ? ? 1.216 1.381 -0.165 0.013 N 251 1 CZ V TYR 5 ? ? CE2 V TYR 5 ? ? 1.250 1.381 -0.131 0.013 N 252 1 CE2 V TYR 5 ? ? CD2 V TYR 5 ? ? 1.218 1.389 -0.171 0.015 N # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9KAP _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9KAP _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 693071 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type CELL _em_entity_assembly.name 'Cryo-EM structure of glycopeptide fibril' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9KAP _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9KAP _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9KAP _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BDP C1 C N R 1 BDP C2 C N R 2 BDP C3 C N S 3 BDP C4 C N S 4 BDP C5 C N S 5 BDP C6 C N N 6 BDP O2 O N N 7 BDP O3 O N N 8 BDP O4 O N N 9 BDP O5 O N N 10 BDP O6A O N N 11 BDP O1 O N N 12 BDP O6B O N N 13 BDP H1 H N N 14 BDP H2 H N N 15 BDP H3 H N N 16 BDP H4 H N N 17 BDP H5 H N N 18 BDP HO2 H N N 19 BDP HO3 H N N 20 BDP HO4 H N N 21 BDP HO1 H N N 22 BDP HO6B H N N 23 CYS N N N N 24 CYS CA C N R 25 CYS C C N N 26 CYS O O N N 27 CYS CB C N N 28 CYS SG S N N 29 CYS OXT O N N 30 CYS H H N N 31 CYS H2 H N N 32 CYS HA H N N 33 CYS HB2 H N N 34 CYS HB3 H N N 35 CYS HG H N N 36 CYS HXT H N N 37 TYR N N N N 38 TYR CA C N S 39 TYR C C N N 40 TYR O O N N 41 TYR CB C N N 42 TYR CG C Y N 43 TYR CD1 C Y N 44 TYR CD2 C Y N 45 TYR CE1 C Y N 46 TYR CE2 C Y N 47 TYR CZ C Y N 48 TYR OH O N N 49 TYR OXT O N N 50 TYR H H N N 51 TYR H2 H N N 52 TYR HA H N N 53 TYR HB2 H N N 54 TYR HB3 H N N 55 TYR HD1 H N N 56 TYR HD2 H N N 57 TYR HE1 H N N 58 TYR HE2 H N N 59 TYR HH H N N 60 TYR HXT H N N 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BDP C1 C2 sing N N 1 BDP C1 O5 sing N N 2 BDP C1 O1 sing N N 3 BDP C1 H1 sing N N 4 BDP C2 C3 sing N N 5 BDP C2 O2 sing N N 6 BDP C2 H2 sing N N 7 BDP C3 C4 sing N N 8 BDP C3 O3 sing N N 9 BDP C3 H3 sing N N 10 BDP C4 C5 sing N N 11 BDP C4 O4 sing N N 12 BDP C4 H4 sing N N 13 BDP C5 C6 sing N N 14 BDP C5 O5 sing N N 15 BDP C5 H5 sing N N 16 BDP C6 O6A doub N N 17 BDP C6 O6B sing N N 18 BDP O2 HO2 sing N N 19 BDP O3 HO3 sing N N 20 BDP O4 HO4 sing N N 21 BDP O1 HO1 sing N N 22 BDP O6B HO6B sing N N 23 CYS N CA sing N N 24 CYS N H sing N N 25 CYS N H2 sing N N 26 CYS CA C sing N N 27 CYS CA CB sing N N 28 CYS CA HA sing N N 29 CYS C O doub N N 30 CYS C OXT sing N N 31 CYS CB SG sing N N 32 CYS CB HB2 sing N N 33 CYS CB HB3 sing N N 34 CYS SG HG sing N N 35 CYS OXT HXT sing N N 36 TYR N CA sing N N 37 TYR N H sing N N 38 TYR N H2 sing N N 39 TYR CA C sing N N 40 TYR CA CB sing N N 41 TYR CA HA sing N N 42 TYR C O doub N N 43 TYR C OXT sing N N 44 TYR CB CG sing N N 45 TYR CB HB2 sing N N 46 TYR CB HB3 sing N N 47 TYR CG CD1 doub Y N 48 TYR CG CD2 sing Y N 49 TYR CD1 CE1 sing Y N 50 TYR CD1 HD1 sing N N 51 TYR CD2 CE2 doub Y N 52 TYR CD2 HD2 sing N N 53 TYR CE1 CZ doub Y N 54 TYR CE1 HE1 sing N N 55 TYR CE2 CZ sing Y N 56 TYR CE2 HE2 sing N N 57 TYR CZ OH sing N N 58 TYR OH HH sing N N 59 TYR OXT HXT sing N N 60 # _em_admin.current_status REL _em_admin.deposition_date 2024-10-29 _em_admin.deposition_site PDBJ _em_admin.entry_id 9KAP _em_admin.last_update 2025-06-25 _em_admin.map_release_date 2025-06-11 _em_admin.title 'Cryo-EM structure of glycopeptide fibril' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 115.10 _em_helical_entity.axial_rise_per_subunit 3.19 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'MODEL REFINEMENT' ? 1 ? ? ? PHENIX ? ? 'IMAGE ACQUISITION' ? 2 1 1 1 ? ? ? 'PARTICLE SELECTION' ? 3 1 1 1 ? ? ? 'VOLUME SELECTION' ? 4 1 1 1 ? ? ? CLASSIFICATION ? 5 1 1 1 ? ? ? MASKING ? 6 1 1 1 ? ? ? RECONSTRUCTION ? 7 1 1 1 ? ? ? 'INITIAL EULER ASSIGNMENT' ? 8 1 1 1 ? ? ? 'FINAL EULER ASSIGNMENT' ? 9 1 1 1 ? ? ? 'CTF CORRECTION' ? 10 1 1 1 ? ? ? 'LAYERLINE INDEXING' ? 11 1 1 1 ? ? ? 'DIFFRACTION INDEXING' ? 12 1 1 1 ? ? ? 'MODEL FITTING' ? 13 1 1 1 ? ? ? 'SERIES ALIGNMENT' ? 14 1 1 1 ? ? ? 'MOLECULAR REPLACEMENT' ? 15 1 1 1 ? ? ? 'LATTICE DISTORTION CORRECTION' ? 16 1 1 1 ? ? ? 'SYMMETRY DETERMINATION' ? 17 1 1 1 ? ? ? 'CRYSTALLOGRAPHY MERGING' ? 18 1 1 1 ? ? ? OTHER ? 19 1 1 1 ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9KAP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #