HEADER HYDROLASE/RNA 07-NOV-24 9KFX TITLE CRYSTAL STRUCTURE OF SYNTHETIC PPR-DYW IN COMPLEX WITH TARGET RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNTHETIC PPR-DYW PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RPOA RNA (5'- COMPND 7 R(*UP*UP*AP*CP*AP*CP*GP*UP*GP*CP*AP*AP*AP*AP*UP*CP*UP*G)-3'); COMPND 8 CHAIN: R, r; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 9 ORGANISM_TAXID: 3702 KEYWDS RNA BINDING PROTEIN, PENTATRICOPEPTIDE REPEAT DEAMINASE, PLANT RNA KEYWDS 2 EDITING RNA COMPLEX, HYDROLASE, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.TERAMOTO,A.OKADA,R.URUSHIHARA,B.GUTMANN,M.ICHINOSE,Y.YAGI, AUTHOR 2 T.NAKAMURA,Y.KAKUTA REVDAT 1 12-NOV-25 9KFX 0 JRNL AUTH T.TERAMOTO,R.URUSHIHARA,R.AOYAMA,A.OKADA,B.GUTMANN, JRNL AUTH 2 M.ICHINOSE,Y.YAGI,Y.KAKUTA,T.NAKAMURA JRNL TITL STRUCTURAL BASIS OF C-TO-U RNA EDITING BY PPR-DYW PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.36 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.380 REMARK 3 FREE R VALUE TEST SET COUNT : 2004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3600 - 6.5000 1.00 4324 149 0.1515 0.1826 REMARK 3 2 6.5000 - 5.1600 1.00 4179 147 0.1933 0.2451 REMARK 3 3 5.1600 - 4.5100 1.00 4110 145 0.1671 0.2259 REMARK 3 4 4.5100 - 4.1000 1.00 4112 148 0.1626 0.1858 REMARK 3 5 4.1000 - 3.8100 1.00 4086 138 0.1795 0.2069 REMARK 3 6 3.8100 - 3.5800 1.00 4056 146 0.2097 0.2338 REMARK 3 7 3.5800 - 3.4000 1.00 4066 140 0.2166 0.2815 REMARK 3 8 3.4000 - 3.2500 1.00 4046 143 0.2386 0.2718 REMARK 3 9 3.2500 - 3.1300 1.00 4038 140 0.2809 0.3352 REMARK 3 10 3.1300 - 3.0200 1.00 4065 146 0.3004 0.3489 REMARK 3 11 3.0200 - 2.9300 1.00 4061 131 0.2894 0.3181 REMARK 3 12 2.9300 - 2.8400 1.00 4020 142 0.2849 0.3365 REMARK 3 13 2.8400 - 2.7700 1.00 4023 149 0.2939 0.3475 REMARK 3 14 2.7700 - 2.7000 1.00 4041 140 0.3154 0.3790 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.080 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 10687 REMARK 3 ANGLE : 0.517 14595 REMARK 3 CHIRALITY : 0.036 1595 REMARK 3 PLANARITY : 0.004 1766 REMARK 3 DIHEDRAL : 19.847 4103 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300053517. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59240 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.210 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1000MM SODIUM CITRATE TRIBASIC, 100MM REMARK 280 TRIS-HCL PH 7.0, 200MM NACL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 51.83000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.67500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 51.83000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.67500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, r REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 35 -162.53 -127.90 REMARK 500 GLU A 86 72.30 -119.21 REMARK 500 ASN A 101 -166.35 -127.89 REMARK 500 SER A 400 5.77 -69.29 REMARK 500 PRO A 402 23.81 -74.82 REMARK 500 GLN A 499 30.37 -95.93 REMARK 500 LEU A 527 40.21 -107.97 REMARK 500 ASP A 592 -145.39 -86.72 REMARK 500 ASN A 594 -39.56 -147.27 REMARK 500 ASP B 35 -160.12 -129.41 REMARK 500 GLU B 86 72.67 -106.05 REMARK 500 ASN B 101 -166.11 -124.21 REMARK 500 MET B 365 -71.83 -53.87 REMARK 500 GLN B 499 36.94 -89.96 REMARK 500 ASP B 592 -144.51 -82.18 REMARK 500 ASN B 594 -45.34 -147.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 542 ND1 REMARK 620 2 CYS A 570 SG 118.5 REMARK 620 3 CYS A 573 SG 85.3 104.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 574 NE2 REMARK 620 2 HIS A 597 ND1 99.5 REMARK 620 3 CYS A 604 SG 108.8 110.9 REMARK 620 4 CYS A 606 SG 102.2 120.7 112.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 542 ND1 REMARK 620 2 CYS B 570 SG 122.0 REMARK 620 3 CYS B 573 SG 94.6 102.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 574 NE2 REMARK 620 2 HIS B 597 ND1 106.3 REMARK 620 3 CYS B 604 SG 103.1 110.9 REMARK 620 4 CYS B 606 SG 105.9 115.1 114.4 REMARK 620 N 1 2 3 DBREF 9KFX A -1 610 PDB 9KFX 9KFX -1 610 DBREF 9KFX B -1 610 PDB 9KFX 9KFX -1 610 DBREF 9KFX R -15 2 PDB 9KFX 9KFX -15 2 DBREF 9KFX r -15 2 PDB 9KFX 9KFX -15 2 SEQRES 1 A 612 ASN SER VAL PHE SER TRP ASN SER LYS ILE ARG GLY TYR SEQRES 2 A 612 ALA ARG ASN GLY GLN PRO GLU GLU ALA LEU SER LEU TYR SEQRES 3 A 612 SER GLN MET ARG ARG SER GLY ILE LYS PRO ASP ASN TYR SEQRES 4 A 612 THR PHE PRO PHE VAL LEU LYS ALA CYS ALA SER LEU SER SEQRES 5 A 612 SER LEU LYS GLU GLY LYS GLN ILE HIS GLY HIS VAL ILE SEQRES 6 A 612 LYS SER GLY PHE GLU SER ASP VAL TYR VAL GLN SER ALA SEQRES 7 A 612 LEU ILE ASP MET TYR ALA LYS CYS GLY GLU LEU GLU ASP SEQRES 8 A 612 ALA ARG LYS VAL PHE ASP GLU MET PRO GLU ARG ASN VAL SEQRES 9 A 612 VAL SER TRP ASN ALA MET ILE SER GLY TYR ALA GLN ASN SEQRES 10 A 612 GLY GLN SER GLU GLU ALA LEU GLU LEU PHE ARG GLU MET SEQRES 11 A 612 GLN GLN GLU GLY ILE LYS PRO SER GLU PHE THR PHE CYS SEQRES 12 A 612 SER VAL LEU SER ALA CYS ALA SER LEU GLY SER LEU GLU SEQRES 13 A 612 MET GLY LYS GLN ILE HIS GLY TYR VAL ILE LYS SER GLY SEQRES 14 A 612 PHE GLU SER ILE VAL PHE VAL GLY ASN ALA LEU ILE ASP SEQRES 15 A 612 MET TYR ALA LYS CYS GLY SER ILE GLU ASP ALA ARG LYS SEQRES 16 A 612 VAL PHE ASP GLU MET PRO GLU ARG THR VAL VAL SER TRP SEQRES 17 A 612 THR ALA MET ILE SER GLY TYR ALA GLN ASN GLY GLN SER SEQRES 18 A 612 GLU GLU ALA LEU GLU LEU PHE ARG GLU MET GLN ARG GLU SEQRES 19 A 612 GLY VAL LYS PRO ASP GLU VAL THR LEU PRO SER VAL LEU SEQRES 20 A 612 SER ALA CYS ALA ASN LEU GLY ALA LEU GLU GLN GLY LYS SEQRES 21 A 612 GLN ILE HIS ALA TYR VAL ILE LYS SER GLY PHE GLU SER SEQRES 22 A 612 ASP VAL PHE VAL GLY SER ALA LEU ILE ASP MET TYR ALA SEQRES 23 A 612 LYS CYS GLY SER ILE GLU ASP ALA ARG LYS VAL PHE ASP SEQRES 24 A 612 LYS MET PRO GLU ARG ASP VAL VAL SER TRP ASN ALA MET SEQRES 25 A 612 ILE ALA ALA TYR ALA GLN HIS GLY HIS GLY LYS GLU ALA SEQRES 26 A 612 LEU GLN LEU PHE GLN GLN MET GLN GLN GLU GLY VAL LYS SEQRES 27 A 612 PRO SER GLU VAL THR PHE THR SER ILE LEU SER ALA CYS SEQRES 28 A 612 SER HIS ALA GLY LEU VAL ASP GLU GLY HIS HIS TYR PHE SEQRES 29 A 612 GLU SER MET SER PRO ASP TYR GLY ILE THR PRO ARG VAL SEQRES 30 A 612 GLU HIS TYR GLY CYS MET VAL ASP LEU LEU GLY ARG ALA SEQRES 31 A 612 GLY ARG LEU ASP GLU ALA GLU ASP LEU ILE LYS SER MET SEQRES 32 A 612 PRO PHE GLN PRO ASN VAL VAL VAL TRP GLY THR LEU LEU SEQRES 33 A 612 GLY ALA CYS ARG VAL HIS GLY ASP VAL GLU ARG GLY GLU SEQRES 34 A 612 ARG ALA ALA GLU ARG ILE LEU GLU LEU ASP PRO GLU SER SEQRES 35 A 612 ALA ALA PRO TYR VAL LEU LEU SER ASN ILE TYR ALA ALA SEQRES 36 A 612 ALA GLY ARG TRP ASP GLU ALA ALA LYS VAL ARG LYS LEU SEQRES 37 A 612 MET LYS GLU ARG GLY VAL LYS LYS GLU PRO GLY CYS SER SEQRES 38 A 612 TRP ILE GLU VAL ASN ASN LYS VAL HIS GLU PHE VAL ALA SEQRES 39 A 612 GLY ASP LYS SER HIS PRO GLN THR LYS GLU ILE TYR ALA SEQRES 40 A 612 GLU LEU GLU ARG LEU SER LYS GLN MET LYS GLU ALA GLY SEQRES 41 A 612 TYR VAL PRO ASP THR LYS PHE VAL LEU HIS ASP VAL GLU SEQRES 42 A 612 GLU GLU GLU LYS GLU GLN LEU LEU CYS TYR HIS SER GLU SEQRES 43 A 612 LYS LEU ALA ILE ALA PHE GLY LEU ILE SER THR PRO PRO SEQRES 44 A 612 GLY THR PRO LEU ARG ILE ILE LYS ASN LEU ARG VAL CYS SEQRES 45 A 612 GLY ASP CYS HIS THR ALA THR LYS PHE ILE SER LYS ILE SEQRES 46 A 612 VAL GLY ARG GLU ILE VAL VAL ARG ASP ALA ASN ARG PHE SEQRES 47 A 612 HIS HIS PHE LYS ASP GLY VAL CYS SER CYS GLY ASP TYR SEQRES 48 A 612 TRP SEQRES 1 B 612 ASN SER VAL PHE SER TRP ASN SER LYS ILE ARG GLY TYR SEQRES 2 B 612 ALA ARG ASN GLY GLN PRO GLU GLU ALA LEU SER LEU TYR SEQRES 3 B 612 SER GLN MET ARG ARG SER GLY ILE LYS PRO ASP ASN TYR SEQRES 4 B 612 THR PHE PRO PHE VAL LEU LYS ALA CYS ALA SER LEU SER SEQRES 5 B 612 SER LEU LYS GLU GLY LYS GLN ILE HIS GLY HIS VAL ILE SEQRES 6 B 612 LYS SER GLY PHE GLU SER ASP VAL TYR VAL GLN SER ALA SEQRES 7 B 612 LEU ILE ASP MET TYR ALA LYS CYS GLY GLU LEU GLU ASP SEQRES 8 B 612 ALA ARG LYS VAL PHE ASP GLU MET PRO GLU ARG ASN VAL SEQRES 9 B 612 VAL SER TRP ASN ALA MET ILE SER GLY TYR ALA GLN ASN SEQRES 10 B 612 GLY GLN SER GLU GLU ALA LEU GLU LEU PHE ARG GLU MET SEQRES 11 B 612 GLN GLN GLU GLY ILE LYS PRO SER GLU PHE THR PHE CYS SEQRES 12 B 612 SER VAL LEU SER ALA CYS ALA SER LEU GLY SER LEU GLU SEQRES 13 B 612 MET GLY LYS GLN ILE HIS GLY TYR VAL ILE LYS SER GLY SEQRES 14 B 612 PHE GLU SER ILE VAL PHE VAL GLY ASN ALA LEU ILE ASP SEQRES 15 B 612 MET TYR ALA LYS CYS GLY SER ILE GLU ASP ALA ARG LYS SEQRES 16 B 612 VAL PHE ASP GLU MET PRO GLU ARG THR VAL VAL SER TRP SEQRES 17 B 612 THR ALA MET ILE SER GLY TYR ALA GLN ASN GLY GLN SER SEQRES 18 B 612 GLU GLU ALA LEU GLU LEU PHE ARG GLU MET GLN ARG GLU SEQRES 19 B 612 GLY VAL LYS PRO ASP GLU VAL THR LEU PRO SER VAL LEU SEQRES 20 B 612 SER ALA CYS ALA ASN LEU GLY ALA LEU GLU GLN GLY LYS SEQRES 21 B 612 GLN ILE HIS ALA TYR VAL ILE LYS SER GLY PHE GLU SER SEQRES 22 B 612 ASP VAL PHE VAL GLY SER ALA LEU ILE ASP MET TYR ALA SEQRES 23 B 612 LYS CYS GLY SER ILE GLU ASP ALA ARG LYS VAL PHE ASP SEQRES 24 B 612 LYS MET PRO GLU ARG ASP VAL VAL SER TRP ASN ALA MET SEQRES 25 B 612 ILE ALA ALA TYR ALA GLN HIS GLY HIS GLY LYS GLU ALA SEQRES 26 B 612 LEU GLN LEU PHE GLN GLN MET GLN GLN GLU GLY VAL LYS SEQRES 27 B 612 PRO SER GLU VAL THR PHE THR SER ILE LEU SER ALA CYS SEQRES 28 B 612 SER HIS ALA GLY LEU VAL ASP GLU GLY HIS HIS TYR PHE SEQRES 29 B 612 GLU SER MET SER PRO ASP TYR GLY ILE THR PRO ARG VAL SEQRES 30 B 612 GLU HIS TYR GLY CYS MET VAL ASP LEU LEU GLY ARG ALA SEQRES 31 B 612 GLY ARG LEU ASP GLU ALA GLU ASP LEU ILE LYS SER MET SEQRES 32 B 612 PRO PHE GLN PRO ASN VAL VAL VAL TRP GLY THR LEU LEU SEQRES 33 B 612 GLY ALA CYS ARG VAL HIS GLY ASP VAL GLU ARG GLY GLU SEQRES 34 B 612 ARG ALA ALA GLU ARG ILE LEU GLU LEU ASP PRO GLU SER SEQRES 35 B 612 ALA ALA PRO TYR VAL LEU LEU SER ASN ILE TYR ALA ALA SEQRES 36 B 612 ALA GLY ARG TRP ASP GLU ALA ALA LYS VAL ARG LYS LEU SEQRES 37 B 612 MET LYS GLU ARG GLY VAL LYS LYS GLU PRO GLY CYS SER SEQRES 38 B 612 TRP ILE GLU VAL ASN ASN LYS VAL HIS GLU PHE VAL ALA SEQRES 39 B 612 GLY ASP LYS SER HIS PRO GLN THR LYS GLU ILE TYR ALA SEQRES 40 B 612 GLU LEU GLU ARG LEU SER LYS GLN MET LYS GLU ALA GLY SEQRES 41 B 612 TYR VAL PRO ASP THR LYS PHE VAL LEU HIS ASP VAL GLU SEQRES 42 B 612 GLU GLU GLU LYS GLU GLN LEU LEU CYS TYR HIS SER GLU SEQRES 43 B 612 LYS LEU ALA ILE ALA PHE GLY LEU ILE SER THR PRO PRO SEQRES 44 B 612 GLY THR PRO LEU ARG ILE ILE LYS ASN LEU ARG VAL CYS SEQRES 45 B 612 GLY ASP CYS HIS THR ALA THR LYS PHE ILE SER LYS ILE SEQRES 46 B 612 VAL GLY ARG GLU ILE VAL VAL ARG ASP ALA ASN ARG PHE SEQRES 47 B 612 HIS HIS PHE LYS ASP GLY VAL CYS SER CYS GLY ASP TYR SEQRES 48 B 612 TRP SEQRES 1 R 18 U U A C A C G U G C A A A SEQRES 2 R 18 A U C U G SEQRES 1 r 18 U U A C A C G U G C A A A SEQRES 2 r 18 A U C U G HET ZN A1001 1 HET ZN A1002 1 HET GOL A1003 6 HET ZN B1001 1 HET ZN B1002 1 HET GOL B1003 6 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 ZN 4(ZN 2+) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 11 HOH *48(H2 O) HELIX 1 AA1 SER A 0 GLY A 15 1 16 HELIX 2 AA2 GLN A 16 SER A 30 1 15 HELIX 3 AA3 THR A 38 SER A 50 1 13 HELIX 4 AA4 SER A 51 GLY A 66 1 16 HELIX 5 AA5 ASP A 70 CYS A 84 1 15 HELIX 6 AA6 GLU A 86 MET A 97 1 12 HELIX 7 AA7 ASN A 101 ASN A 115 1 15 HELIX 8 AA8 GLN A 117 GLU A 131 1 15 HELIX 9 AA9 SER A 136 GLY A 151 1 16 HELIX 10 AB1 SER A 152 GLY A 167 1 16 HELIX 11 AB2 ILE A 171 CYS A 185 1 15 HELIX 12 AB3 SER A 187 GLU A 197 1 11 HELIX 13 AB4 THR A 202 ASN A 216 1 15 HELIX 14 AB5 GLN A 218 GLU A 232 1 15 HELIX 15 AB6 VAL A 239 GLY A 252 1 14 HELIX 16 AB7 ALA A 253 SER A 267 1 15 HELIX 17 AB8 GLY A 268 SER A 271 5 4 HELIX 18 AB9 ASP A 272 CYS A 286 1 15 HELIX 19 AC1 SER A 288 MET A 299 1 12 HELIX 20 AC2 ASP A 303 HIS A 317 1 15 HELIX 21 AC3 HIS A 319 GLU A 333 1 15 HELIX 22 AC4 SER A 338 GLY A 353 1 16 HELIX 23 AC5 LEU A 354 SER A 364 1 11 HELIX 24 AC6 ARG A 374 ALA A 388 1 15 HELIX 25 AC7 ARG A 390 SER A 400 1 11 HELIX 26 AC8 ASN A 406 GLY A 421 1 16 HELIX 27 AC9 ASP A 422 ASP A 437 1 16 HELIX 28 AD1 ALA A 441 ALA A 454 1 14 HELIX 29 AD2 ARG A 456 ARG A 470 1 15 HELIX 30 AD3 GLN A 499 GLY A 518 1 20 HELIX 31 AD4 GLU A 531 TYR A 541 1 11 HELIX 32 AD5 HIS A 542 THR A 555 1 14 HELIX 33 AD6 CYS A 570 VAL A 584 1 15 HELIX 34 AD7 SER B 0 ASN B 14 1 15 HELIX 35 AD8 GLN B 16 SER B 30 1 15 HELIX 36 AD9 THR B 38 SER B 50 1 13 HELIX 37 AE1 SER B 51 SER B 65 1 15 HELIX 38 AE2 ASP B 70 CYS B 84 1 15 HELIX 39 AE3 GLU B 86 GLU B 96 1 11 HELIX 40 AE4 ASN B 101 ASN B 115 1 15 HELIX 41 AE5 GLN B 117 GLY B 132 1 16 HELIX 42 AE6 SER B 136 GLY B 151 1 16 HELIX 43 AE7 SER B 152 GLY B 167 1 16 HELIX 44 AE8 ILE B 171 CYS B 185 1 15 HELIX 45 AE9 SER B 187 MET B 198 1 12 HELIX 46 AF1 THR B 202 GLN B 215 1 14 HELIX 47 AF2 GLN B 218 GLU B 232 1 15 HELIX 48 AF3 VAL B 239 GLY B 252 1 14 HELIX 49 AF4 ALA B 253 SER B 267 1 15 HELIX 50 AF5 ASP B 272 CYS B 286 1 15 HELIX 51 AF6 SER B 288 LYS B 298 1 11 HELIX 52 AF7 ASP B 303 HIS B 317 1 15 HELIX 53 AF8 HIS B 319 GLU B 333 1 15 HELIX 54 AF9 SER B 338 GLY B 353 1 16 HELIX 55 AG1 LEU B 354 GLY B 370 1 17 HELIX 56 AG2 ARG B 374 ALA B 388 1 15 HELIX 57 AG3 ARG B 390 MET B 401 1 12 HELIX 58 AG4 ASN B 406 GLY B 421 1 16 HELIX 59 AG5 ASP B 422 ASP B 437 1 16 HELIX 60 AG6 ALA B 441 ALA B 454 1 14 HELIX 61 AG7 ARG B 456 ARG B 470 1 15 HELIX 62 AG8 GLN B 499 ALA B 517 1 19 HELIX 63 AG9 ASP B 522 VAL B 526 5 5 HELIX 64 AH1 GLU B 531 TYR B 541 1 11 HELIX 65 AH2 HIS B 542 THR B 555 1 14 HELIX 66 AH3 CYS B 570 GLY B 585 1 16 SHEET 1 AA1 6 LYS A 486 VAL A 491 0 SHEET 2 AA1 6 CYS A 478 VAL A 483 -1 N SER A 479 O PHE A 490 SHEET 3 AA1 6 LEU A 561 LYS A 565 -1 O ILE A 564 N TRP A 480 SHEET 4 AA1 6 ILE A 588 ARG A 591 1 O VAL A 589 N ILE A 563 SHEET 5 AA1 6 PHE A 596 LYS A 600 -1 O PHE A 599 N ILE A 588 SHEET 6 AA1 6 VAL A 603 CYS A 604 -1 O VAL A 603 N LYS A 600 SHEET 1 AA2 6 LYS B 486 VAL B 491 0 SHEET 2 AA2 6 CYS B 478 VAL B 483 -1 N ILE B 481 O HIS B 488 SHEET 3 AA2 6 LEU B 561 LYS B 565 -1 O ILE B 564 N TRP B 480 SHEET 4 AA2 6 ILE B 588 ARG B 591 1 O VAL B 589 N ILE B 563 SHEET 5 AA2 6 PHE B 596 LYS B 600 -1 O HIS B 597 N VAL B 590 SHEET 6 AA2 6 VAL B 603 CYS B 604 -1 O VAL B 603 N LYS B 600 LINK ND1 HIS A 542 ZN ZN A1001 1555 1555 2.30 LINK SG CYS A 570 ZN ZN A1001 1555 1555 2.30 LINK SG CYS A 573 ZN ZN A1001 1555 1555 2.30 LINK NE2 HIS A 574 ZN ZN A1002 1555 1555 2.05 LINK ND1 HIS A 597 ZN ZN A1002 1555 1555 2.05 LINK SG CYS A 604 ZN ZN A1002 1555 1555 2.30 LINK SG CYS A 606 ZN ZN A1002 1555 1555 2.31 LINK ND1 HIS B 542 ZN ZN B1001 1555 1555 2.34 LINK SG CYS B 570 ZN ZN B1001 1555 1555 2.35 LINK SG CYS B 573 ZN ZN B1001 1555 1555 2.30 LINK NE2 HIS B 574 ZN ZN B1002 1555 1555 2.05 LINK ND1 HIS B 597 ZN ZN B1002 1555 1555 2.05 LINK SG CYS B 604 ZN ZN B1002 1555 1555 2.31 LINK SG CYS B 606 ZN ZN B1002 1555 1555 2.30 CRYST1 103.660 109.350 187.410 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009647 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005336 0.00000 TER 4789 TRP A 610 TER 9586 TRP B 610 TER 9985 G R 2 TER 10384 G r 2 HETATM10385 ZN ZN A1001 31.841 -19.383 -67.088 0.70108.52 ZN HETATM10386 ZN ZN A1002 25.557 -24.242 -57.842 1.00 57.71 ZN HETATM10387 C1 GOL A1003 -23.741 5.165 -28.252 1.00 72.58 C HETATM10388 O1 GOL A1003 -24.070 5.880 -27.102 1.00 77.02 O HETATM10389 C2 GOL A1003 -24.221 3.711 -28.037 1.00 77.64 C HETATM10390 O2 GOL A1003 -23.164 2.838 -27.831 1.00 84.41 O HETATM10391 C3 GOL A1003 -25.028 3.365 -29.309 1.00 79.79 C HETATM10392 O3 GOL A1003 -26.356 3.689 -29.041 1.00 70.06 O HETATM10393 ZN ZN B1001 -51.403 59.606 -74.154 0.70121.93 ZN HETATM10394 ZN ZN B1002 -55.427 53.189 -83.520 1.00 56.54 ZN HETATM10395 C1 GOL B1003 -38.485 52.332 -86.609 1.00 75.89 C HETATM10396 O1 GOL B1003 -38.103 51.000 -86.744 1.00 78.92 O HETATM10397 C2 GOL B1003 -37.862 52.861 -85.297 1.00 76.53 C HETATM10398 O2 GOL B1003 -38.555 53.948 -84.788 1.00 81.92 O HETATM10399 C3 GOL B1003 -37.850 51.657 -84.328 1.00 77.22 C HETATM10400 O3 GOL B1003 -37.122 52.055 -83.208 1.00 71.41 O HETATM10401 O HOH A1101 4.981 -6.393 -59.209 1.00 83.66 O HETATM10402 O HOH A1102 18.854 -23.166 -61.709 1.00 54.13 O HETATM10403 O HOH A1103 3.977 0.583 -50.764 1.00 75.63 O HETATM10404 O HOH A1104 17.699 -8.700 -33.128 1.00 76.38 O HETATM10405 O HOH A1105 -28.160 25.851 -38.177 1.00 58.73 O HETATM10406 O HOH A1106 -17.202 8.521 -41.806 1.00 64.79 O HETATM10407 O HOH A1107 17.382 -11.279 -57.798 1.00 53.80 O HETATM10408 O HOH A1108 19.641 -22.221 -65.158 1.00 65.54 O HETATM10409 O HOH A1109 20.026 -20.789 -62.716 1.00 55.27 O HETATM10410 O HOH A1110 19.488 -27.569 -57.112 1.00 50.68 O HETATM10411 O HOH A1111 10.875 -22.274 -62.825 1.00 57.11 O HETATM10412 O HOH A1112 14.118 -29.813 -62.593 1.00 57.55 O HETATM10413 O HOH A1113 30.385 -27.726 -60.705 1.00 63.20 O HETATM10414 O HOH A1114 14.929 -36.789 -65.789 1.00 58.77 O HETATM10415 O HOH A1115 7.158 -32.915 -79.526 1.00 71.09 O HETATM10416 O HOH A1116 -21.538 10.813 -40.544 1.00 58.19 O HETATM10417 O HOH A1117 -26.340 19.981 -58.272 1.00 64.84 O HETATM10418 O HOH A1118 33.258 -28.663 -65.106 1.00 72.69 O HETATM10419 O HOH A1119 -2.613 -1.700 -62.698 1.00 61.18 O HETATM10420 O HOH A1120 15.254 -24.891 -68.308 1.00 48.89 O HETATM10421 O HOH A1121 19.341 -26.890 -50.337 1.00 60.56 O HETATM10422 O HOH B1101 -58.478 26.333 -63.875 1.00 64.20 O HETATM10423 O HOH B1102 -29.288 32.566 -87.866 1.00 68.55 O HETATM10424 O HOH B1103 -30.177 30.422 -93.611 1.00 66.03 O HETATM10425 O HOH B1104 -16.431 26.026 -89.524 1.00 64.49 O HETATM10426 O HOH B1105 -53.679 47.856 -75.338 1.00 51.21 O HETATM10427 O HOH B1106 -52.250 56.413 -60.946 1.00 55.23 O HETATM10428 O HOH B1107 -35.186 2.758 -77.947 1.00 79.17 O HETATM10429 O HOH B1108 -58.454 46.952 -84.435 1.00 56.06 O HETATM10430 O HOH B1109 -7.798 -1.074-100.813 1.00 60.36 O HETATM10431 O HOH B1110 -52.614 47.766 -78.017 1.00 52.18 O HETATM10432 O HOH B1111 -61.452 41.772 -79.060 1.00 51.51 O HETATM10433 O HOH B1112 -54.874 46.488 -79.606 1.00 57.06 O HETATM10434 O HOH B1113 -53.903 38.553 -78.119 1.00 56.24 O HETATM10435 O HOH B1114 -66.306 32.451 -70.348 1.00 68.43 O HETATM10436 O HOH B1115 -68.761 42.307 -76.929 1.00 54.91 O HETATM10437 O HOH B1116 -57.773 19.864 -91.518 1.00 72.35 O HETATM10438 O HOH B1117 -42.145 45.148 -82.243 1.00 60.39 O HETATM10439 O HOH B1118 -13.613 9.523 -87.079 1.00 52.37 O HETATM10440 O HOH B1119 -13.153 38.522 -79.893 1.00 70.19 O HETATM10441 O HOH B1120 -34.573 28.150 -98.392 1.00 61.85 O HETATM10442 O HOH B1121 -59.462 58.150 -81.373 1.00 55.28 O HETATM10443 O HOH B1122 -25.057 -2.401 -78.370 1.00 61.62 O HETATM10444 O HOH B1123 -69.206 39.296 -69.979 1.00 62.45 O HETATM10445 O HOH R 101 -13.842 7.197 -51.260 1.00 78.71 O HETATM10446 O HOH R 102 2.102 -0.325 -45.012 1.00 74.59 O HETATM10447 O HOH R 103 -3.095 13.422 -48.684 1.00 66.57 O HETATM10448 O HOH R 104 -18.909 17.705 -51.115 1.00 54.30 O CONECT 425410385 CONECT 446710385 CONECT 448510385 CONECT 449510386 CONECT 467910386 CONECT 473710386 CONECT 474910386 CONECT 905110393 CONECT 926410393 CONECT 928210393 CONECT 929210394 CONECT 947610394 CONECT 953410394 CONECT 954610394 CONECT10385 4254 4467 4485 CONECT10386 4495 4679 4737 4749 CONECT103871038810389 CONECT1038810387 CONECT10389103871039010391 CONECT1039010389 CONECT103911038910392 CONECT1039210391 CONECT10393 9051 9264 9282 CONECT10394 9292 9476 9534 9546 CONECT103951039610397 CONECT1039610395 CONECT10397103951039810399 CONECT1039810397 CONECT103991039710400 CONECT1040010399 MASTER 289 0 6 66 12 0 0 610436 4 30 100 END