HEADER    IMMUNE SYSTEM/DE NOVO PROTEIN           14-NOV-24   9KKU              
TITLE     HELIX-LOOP-HELIX PEPTIDE (M49) IN COMPLEX WITH VEGF-A                 
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: VASCULAR ENDOTHELIAL GROWTH FACTOR A, LONG FORM;           
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 SYNONYM: L-VEGF,VASCULAR PERMEABILITY FACTOR,VPF;                    
COMPND   5 ENGINEERED: YES;                                                     
COMPND   6 MOL_ID: 2;                                                           
COMPND   7 MOLECULE: M49;                                                       
COMPND   8 CHAIN: C, D;                                                         
COMPND   9 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;                                   
SOURCE   3 ORGANISM_COMMON: HUMAN;                                              
SOURCE   4 ORGANISM_TAXID: 9606;                                                
SOURCE   5 GENE: VEGFA, VEGF;                                                   
SOURCE   6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 562;                                        
SOURCE   8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI2 (DE3);                            
SOURCE   9 MOL_ID: 2;                                                           
SOURCE  10 SYNTHETIC: YES;                                                      
SOURCE  11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE  12 ORGANISM_TAXID: 32630                                                
KEYWDS    HELIX-LOOP-HELIX, INHIBITOR, COMPLEX, DE NOVO PROTEIN, IMMUNE SYSTEM- 
KEYWDS   2 DE NOVO PROTEIN COMPLEX                                              
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    M.KAMO,M.MICHIGAMI,K.INAKA,N.FURUBAYASHI,S.KAITO,Y.KOBAYASHI,         
AUTHOR   2 Y.SHINOHARA,I.FUJII                                                  
REVDAT   1   11-DEC-24 9KKU    0                                                
JRNL        AUTH   M.MICHIGAMI,R.KIRA,M.KAMO,T.HIROKAWA,T.KINOSHITA,K.INAKA,    
JRNL        AUTH 2 I.NAKASE,I.FUJII                                             
JRNL        TITL   STRUCTURAL INSIGHTS INTO HELIX-LOOP-HELIX PEPTIDES FOR       
JRNL        TITL 2 "LIGAND-TARGETING" INTRACELLULAR DRUG DELIVERY VIA VEGF      
JRNL        TITL 3 RECEPTOR-MEDIATED ENDOCYTOSIS.                               
JRNL        REF    BIOCHEM.BIOPHYS.RES.COMMUN.   V. 741 50980 2024              
JRNL        REFN                   ESSN 1090-2104                               
JRNL        PMID   39580956                                                     
JRNL        DOI    10.1016/J.BBRC.2024.150980                                   
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.46 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.8.0258                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 44.24                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 47938                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.219                           
REMARK   3   R VALUE            (WORKING SET) : 0.217                           
REMARK   3   FREE R VALUE                     : 0.250                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.000                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 2518                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : NULL                         
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 1.46                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 1.50                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 3477                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 99.73                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2810                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 200                          
REMARK   3   BIN FREE R VALUE                    : 0.2820                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 2196                                    
REMARK   3   NUCLEIC ACID ATOMS       : 0                                       
REMARK   3   HETEROGEN ATOMS          : 0                                       
REMARK   3   SOLVENT ATOMS            : 161                                     
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 24.78                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -1.27000                                             
REMARK   3    B22 (A**2) : 2.52000                                              
REMARK   3    B33 (A**2) : -1.25000                                             
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.080         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.082         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.067         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.797         
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.951                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.930                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  2256 ; 0.013 ; 0.013       
REMARK   3   BOND LENGTHS OTHERS               (A):  2099 ; 0.002 ; 0.017       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  3049 ; 1.708 ; 1.652       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  4922 ; 1.390 ; 1.574       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   272 ; 7.154 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   107 ;36.971 ;24.019       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   414 ;14.384 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):     8 ;23.745 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   286 ; 0.089 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  2458 ; 0.010 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):   418 ; 0.001 ; 0.020       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  1100 ; 2.470 ; 2.367       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  1099 ; 2.467 ; 2.365       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  1368 ; 3.683 ; 3.529       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  1369 ; 3.684 ; 3.533       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1156 ; 3.310 ; 2.741       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  1155 ; 3.276 ; 2.738       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  1681 ; 5.053 ; 3.958       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  2504 ; 7.132 ;29.897       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  2472 ; 7.086 ;29.733       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS                                                           
REMARK   4                                                                      
REMARK   4 9KKU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-OCT-24.                  
REMARK 100 THE DEPOSITION ID IS D_1300053395.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 03-JUL-17                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 5.6                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : SPRING-8                           
REMARK 200  BEAMLINE                       : BL41XU                             
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.8                                
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : PIXEL                              
REMARK 200  DETECTOR MANUFACTURER          : DECTRIS EIGER X 16M                
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : AIMLESS                            
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 47938                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.450                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 44.240                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY                : 20.40                              
REMARK 200  R MERGE                    (I) : 0.06000                            
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 22.3000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.47                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : 19.40                              
REMARK 200  R MERGE FOR SHELL          (I) : 0.78600                            
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: MOLREP                                                
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 41.41                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NH4-ACOH PH 5.6, 14% PEG 3350,      
REMARK 280  20% 2-PROPANOL, 0.2M CACL2,, 0.4M NACL, 0.04% NAN3, COUNTER-        
REMARK 280  DIFFUSION, TEMPERATURE 293K                                         
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       28.13000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       38.18000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       33.21000            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       38.18000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       28.13000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       33.21000            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC                 
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 6310 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 14500 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -59.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     GLY A     8                                                      
REMARK 465     GLN A     9                                                      
REMARK 465     ASN A    10                                                      
REMARK 465     HIS A    11                                                      
REMARK 465     HIS A    12                                                      
REMARK 465     GLU A    13                                                      
REMARK 465     ASP A   109                                                      
REMARK 465     GLY B     8                                                      
REMARK 465     GLN B     9                                                      
REMARK 465     ASN B    10                                                      
REMARK 465     HIS B    11                                                      
REMARK 465     HIS B    12                                                      
REMARK 465     LYS B   108                                                      
REMARK 465     ASP B   109                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     LYS A 108    CG   CD   CE   NZ                                   
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    LEU D    39     O    ALA D    42              2.10            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500    ARG A  56   NE  -  CZ  -  NH1 ANGL. DEV. =   3.4 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    CYS A  26      110.55    -16.25                                   
REMARK 500    ASP A  63      111.53   -170.54                                   
REMARK 500    PRO A  85      -18.99    -42.48                                   
REMARK 500    CYS B  26      114.83    -27.27                                   
REMARK 500    LYS C  40      -84.16    -67.75                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
DBREF  9KKU A    8   109  UNP    P15692   VEGFA_HUMAN    214    315             
DBREF  9KKU B    8   109  UNP    P15692   VEGFA_HUMAN    214    315             
DBREF  9KKU C    1    43  PDB    9KKU     9KKU             1     43             
DBREF  9KKU D    1    43  PDB    9KKU     9KKU             1     43             
SEQRES   1 A  102  GLY GLN ASN HIS HIS GLU VAL VAL LYS PHE MET ASP VAL          
SEQRES   2 A  102  TYR GLN ARG SER TYR CYS HIS PRO ILE GLU THR LEU VAL          
SEQRES   3 A  102  ASP ILE PHE GLN GLU TYR PRO ASP GLU ILE GLU TYR ILE          
SEQRES   4 A  102  PHE LYS PRO SER CYS VAL PRO LEU MET ARG CYS GLY GLY          
SEQRES   5 A  102  CYS CYS ASN ASP GLU GLY LEU GLU CYS VAL PRO THR GLU          
SEQRES   6 A  102  GLU SER ASN ILE THR MET GLN ILE MET ARG ILE LYS PRO          
SEQRES   7 A  102  HIS GLN GLY GLN HIS ILE GLY GLU MET SER PHE LEU GLN          
SEQRES   8 A  102  HIS ASN LYS CYS GLU CYS ARG PRO LYS LYS ASP                  
SEQRES   1 B  102  GLY GLN ASN HIS HIS GLU VAL VAL LYS PHE MET ASP VAL          
SEQRES   2 B  102  TYR GLN ARG SER TYR CYS HIS PRO ILE GLU THR LEU VAL          
SEQRES   3 B  102  ASP ILE PHE GLN GLU TYR PRO ASP GLU ILE GLU TYR ILE          
SEQRES   4 B  102  PHE LYS PRO SER CYS VAL PRO LEU MET ARG CYS GLY GLY          
SEQRES   5 B  102  CYS CYS ASN ASP GLU GLY LEU GLU CYS VAL PRO THR GLU          
SEQRES   6 B  102  GLU SER ASN ILE THR MET GLN ILE MET ARG ILE LYS PRO          
SEQRES   7 B  102  HIS GLN GLY GLN HIS ILE GLY GLU MET SER PHE LEU GLN          
SEQRES   8 B  102  HIS ASN LYS CYS GLU CYS ARG PRO LYS LYS ASP                  
SEQRES   1 C   43  CYS ALA ALA GLU LEU ALA ALA LEU GLU ALA GLU LEU ALA          
SEQRES   2 C   43  ALA LEU GLU GLY PRO TRP LYS GLY TYR PRO ILE PRO TYR          
SEQRES   3 C   43  GLY LYS LEU GLN PHE LEU ILE LYS LYS LEU LYS GLN LEU          
SEQRES   4 C   43  LYS VAL ALA CYS                                              
SEQRES   1 D   43  CYS ALA ALA GLU LEU ALA ALA LEU GLU ALA GLU LEU ALA          
SEQRES   2 D   43  ALA LEU GLU GLY PRO TRP LYS GLY TYR PRO ILE PRO TYR          
SEQRES   3 D   43  GLY LYS LEU GLN PHE LEU ILE LYS LYS LEU LYS GLN LEU          
SEQRES   4 D   43  LYS VAL ALA CYS                                              
FORMUL   5  HOH   *161(H2 O)                                                    
HELIX    1 AA1 LYS A   16  TYR A   25  1                                  10    
HELIX    2 AA2 ILE A   35  TYR A   39  1                                   5    
HELIX    3 AA3 PRO A   40  ILE A   43  5                                   4    
HELIX    4 AA4 LYS B   16  TYR B   25  1                                  10    
HELIX    5 AA5 ILE B   35  TYR B   39  1                                   5    
HELIX    6 AA6 ALA C    2  ALA C   14  1                                  13    
HELIX    7 AA7 PRO C   25  LYS C   28  5                                   4    
HELIX    8 AA8 LEU C   29  GLN C   38  1                                  10    
HELIX    9 AA9 ALA D    2  ALA D   14  1                                  13    
HELIX   10 AB1 PRO D   25  ALA D   42  1                                  18    
SHEET    1 AA1 2 HIS A  27  ASP A  34  0                                        
SHEET    2 AA1 2 CYS A  51  GLY A  58 -1  O  LEU A  54   N  THR A  31           
SHEET    1 AA2 3 ILE A  46  LYS A  48  0                                        
SHEET    2 AA2 3 LEU A  66  ILE A  83 -1  O  MET A  81   N  LYS A  48           
SHEET    3 AA2 3 HIS A  90  PRO A 106 -1  O  HIS A  90   N  ARG A  82           
SHEET    1 AA3 2 HIS B  27  ASP B  34  0                                        
SHEET    2 AA3 2 CYS B  51  GLY B  58 -1  O  LEU B  54   N  THR B  31           
SHEET    1 AA4 3 ILE B  46  LYS B  48  0                                        
SHEET    2 AA4 3 LEU B  66  ILE B  83 -1  O  ILE B  83   N  ILE B  46           
SHEET    3 AA4 3 HIS B  90  PRO B 106 -1  O  GLN B  98   N  SER B  74           
SSBOND   1 CYS A   26    CYS A   68                          1555   1555  2.03  
SSBOND   2 CYS A   51    CYS B   60                          1555   1555  2.11  
SSBOND   3 CYS A   57    CYS A  102                          1555   1555  2.01  
SSBOND   4 CYS A   60    CYS B   51                          1555   1555  2.16  
SSBOND   5 CYS A   61    CYS A  104                          1555   1555  1.90  
SSBOND   6 CYS B   26    CYS B   68                          1555   1555  2.06  
SSBOND   7 CYS B   57    CYS B  102                          1555   1555  2.04  
SSBOND   8 CYS B   61    CYS B  104                          1555   1555  1.95  
SSBOND   9 CYS C    1    CYS C   43                          1555   1555  2.04  
SSBOND  10 CYS D    1    CYS D   43                          1555   1555  2.04  
CISPEP   1 LYS A   48    PRO A   49          0        -6.44                     
CISPEP   2 LYS B   48    PRO B   49          0        -7.21                     
CRYST1   56.260   66.420   76.360  90.00  90.00  90.00 P 21 21 21    8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.017775  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.015056  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.013096        0.00000