HEADER OXIDOREDUCTASE 20-NOV-24 9KOE TITLE X-RAY CRYSTALLOGRAPHY OF ASCORBATE PEROXIDASE APEX2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-ASCORBATE PEROXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.11; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 STRAIN: GLYCINE MAX (SOYBEAN) (GLYCINE HISPIDA); SOURCE 6 GENE: APX1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS HEME-CONTAINING PROTEIN, FOUR MUTANTS., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KE,R.J.TIAN REVDAT 1 01-APR-26 9KOE 0 JRNL AUTH M.KE,R.J.TIAN JRNL TITL X-RAY CRYSTALLOGRAPHY OF ASCORBATE PEROXIDASE APEX2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 44514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.510 REMARK 3 FREE R VALUE TEST SET COUNT : 2009 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.1900 - 4.2400 0.98 2986 145 0.1928 0.1867 REMARK 3 2 4.2400 - 3.3700 1.00 3064 148 0.1778 0.1983 REMARK 3 3 3.3700 - 2.9400 1.00 3020 143 0.1943 0.2484 REMARK 3 4 2.9400 - 2.6700 1.00 3065 145 0.2119 0.2364 REMARK 3 5 2.6700 - 2.4800 1.00 3039 141 0.1981 0.2370 REMARK 3 6 2.4800 - 2.3400 0.99 3027 144 0.2170 0.2507 REMARK 3 7 2.3400 - 2.2200 1.00 3076 145 0.1967 0.2397 REMARK 3 8 2.2200 - 2.1200 1.00 3015 139 0.2195 0.2778 REMARK 3 9 2.1200 - 2.0400 1.00 3069 150 0.2163 0.2797 REMARK 3 10 2.0400 - 1.9700 0.99 3054 141 0.2263 0.2935 REMARK 3 11 1.9700 - 1.9100 1.00 3034 144 0.2263 0.2402 REMARK 3 12 1.9100 - 1.8500 0.99 3032 143 0.2499 0.3113 REMARK 3 13 1.8500 - 1.8000 0.99 3048 143 0.2551 0.3110 REMARK 3 14 1.8000 - 1.7600 0.97 2976 138 0.2699 0.3643 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : 0.051 560 REMARK 3 PLANARITY : 0.009 714 REMARK 3 DIHEDRAL : 9.815 540 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8407 -21.7849 -7.4500 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.2996 REMARK 3 T33: 0.2446 T12: -0.0893 REMARK 3 T13: 0.0298 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.5061 L22: 2.8118 REMARK 3 L33: 2.3702 L12: 1.0087 REMARK 3 L13: -0.4981 L23: 0.8745 REMARK 3 S TENSOR REMARK 3 S11: -0.2229 S12: 0.4217 S13: -0.1949 REMARK 3 S21: -0.8226 S22: 0.2591 S23: -0.0039 REMARK 3 S31: -0.1090 S32: -0.0709 S33: -0.0551 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1429 -14.7739 3.8903 REMARK 3 T TENSOR REMARK 3 T11: 0.2422 T22: 0.2335 REMARK 3 T33: 0.2160 T12: -0.0401 REMARK 3 T13: 0.0361 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 3.6780 L22: 2.6731 REMARK 3 L33: 3.3109 L12: 1.6873 REMARK 3 L13: -0.1857 L23: -0.8218 REMARK 3 S TENSOR REMARK 3 S11: -0.3067 S12: 0.2699 S13: -0.2353 REMARK 3 S21: -0.2627 S22: 0.0716 S23: -0.5895 REMARK 3 S31: -0.0960 S32: 0.3485 S33: 0.1736 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 74 THROUGH 107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1565 -23.1007 -3.7732 REMARK 3 T TENSOR REMARK 3 T11: 0.3682 T22: 0.2732 REMARK 3 T33: 0.2906 T12: -0.1129 REMARK 3 T13: 0.0916 T23: -0.0826 REMARK 3 L TENSOR REMARK 3 L11: 2.3756 L22: 1.3623 REMARK 3 L33: 2.3510 L12: -0.5810 REMARK 3 L13: -0.8202 L23: 0.0996 REMARK 3 S TENSOR REMARK 3 S11: -0.3465 S12: 0.6302 S13: -0.4961 REMARK 3 S21: -0.5770 S22: 0.2768 S23: -0.3038 REMARK 3 S31: 0.1087 S32: -0.0319 S33: 0.1096 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 108 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8757 -13.4783 -1.7279 REMARK 3 T TENSOR REMARK 3 T11: 0.4696 T22: 0.2156 REMARK 3 T33: 0.2413 T12: -0.0489 REMARK 3 T13: 0.0450 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 2.5643 L22: 0.8345 REMARK 3 L33: 3.2685 L12: -0.5818 REMARK 3 L13: 1.2435 L23: 0.4174 REMARK 3 S TENSOR REMARK 3 S11: -0.0374 S12: 0.4462 S13: 0.2655 REMARK 3 S21: -0.3284 S22: 0.1242 S23: 0.0647 REMARK 3 S31: -0.2743 S32: 0.2037 S33: -0.1242 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 128 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8622 -15.6108 17.1681 REMARK 3 T TENSOR REMARK 3 T11: 0.2606 T22: 0.1978 REMARK 3 T33: 0.1887 T12: 0.0105 REMARK 3 T13: -0.0287 T23: 0.0181 REMARK 3 L TENSOR REMARK 3 L11: 2.1919 L22: 2.5397 REMARK 3 L33: 1.9266 L12: 1.3055 REMARK 3 L13: 0.8111 L23: 0.3085 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: -0.2773 S13: -0.0665 REMARK 3 S21: 0.2011 S22: -0.2141 S23: -0.1028 REMARK 3 S31: -0.0791 S32: -0.1098 S33: 0.1126 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3997 -30.1990 6.1921 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.2040 REMARK 3 T33: 0.1512 T12: -0.0153 REMARK 3 T13: 0.0178 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 4.7962 L22: 4.3009 REMARK 3 L33: 1.2469 L12: -0.1893 REMARK 3 L13: 0.0712 L23: 0.0335 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: -0.3309 S13: 0.2868 REMARK 3 S21: 0.0134 S22: -0.0037 S23: -0.0101 REMARK 3 S31: -0.2025 S32: -0.0863 S33: 0.0176 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0425 -48.5273 1.7773 REMARK 3 T TENSOR REMARK 3 T11: 0.3293 T22: 0.1930 REMARK 3 T33: 0.2852 T12: -0.0562 REMARK 3 T13: 0.0381 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 4.9909 L22: 3.7042 REMARK 3 L33: 2.0169 L12: 1.3889 REMARK 3 L13: -0.1549 L23: 0.3602 REMARK 3 S TENSOR REMARK 3 S11: 0.1819 S12: -0.0633 S13: -0.3246 REMARK 3 S21: 0.0194 S22: -0.1813 S23: -0.1635 REMARK 3 S31: 0.4203 S32: -0.1700 S33: -0.0501 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 74 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8432 -41.8415 13.1425 REMARK 3 T TENSOR REMARK 3 T11: 0.3053 T22: 0.3747 REMARK 3 T33: 0.2775 T12: -0.0631 REMARK 3 T13: -0.0544 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 3.8970 L22: 4.7607 REMARK 3 L33: 3.2381 L12: -1.4198 REMARK 3 L13: -0.6109 L23: -0.0708 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: -0.6370 S13: -0.3065 REMARK 3 S21: 0.4708 S22: -0.0002 S23: -0.3066 REMARK 3 S31: 0.1999 S32: -0.1264 S33: 0.0524 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 127 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4197 -37.8295 2.9464 REMARK 3 T TENSOR REMARK 3 T11: 0.2083 T22: 0.2464 REMARK 3 T33: 0.1366 T12: -0.0165 REMARK 3 T13: -0.0024 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.5396 L22: 4.1112 REMARK 3 L33: 2.1759 L12: -0.8443 REMARK 3 L13: -0.2451 L23: 1.8956 REMARK 3 S TENSOR REMARK 3 S11: 0.1343 S12: -0.2726 S13: 0.1465 REMARK 3 S21: -0.1484 S22: -0.0392 S23: 0.0160 REMARK 3 S31: -0.0819 S32: -0.0516 S33: -0.0524 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 128 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8980 -50.4344 -8.0020 REMARK 3 T TENSOR REMARK 3 T11: 0.3633 T22: 0.2357 REMARK 3 T33: 0.3620 T12: -0.0459 REMARK 3 T13: 0.1260 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 2.0847 L22: 2.7945 REMARK 3 L33: 2.0458 L12: 1.1218 REMARK 3 L13: 0.7998 L23: 1.2808 REMARK 3 S TENSOR REMARK 3 S11: -0.0661 S12: -0.1433 S13: -0.4351 REMARK 3 S21: -0.5166 S22: 0.0993 S23: -0.5536 REMARK 3 S31: 0.0314 S32: -0.1373 S33: -0.0205 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 188 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2492 -48.8553 -16.8827 REMARK 3 T TENSOR REMARK 3 T11: 0.9018 T22: 0.3828 REMARK 3 T33: 0.5978 T12: -0.2494 REMARK 3 T13: 0.5051 T23: -0.3676 REMARK 3 L TENSOR REMARK 3 L11: 0.7212 L22: 2.9833 REMARK 3 L33: 0.6616 L12: 1.4430 REMARK 3 L13: 0.3196 L23: 0.5999 REMARK 3 S TENSOR REMARK 3 S11: -0.1881 S12: 0.2456 S13: -0.5827 REMARK 3 S21: -0.4220 S22: 0.2577 S23: -0.6891 REMARK 3 S31: -0.2691 S32: 0.3306 S33: -0.1635 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 228 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8188 -37.1290 -9.7897 REMARK 3 T TENSOR REMARK 3 T11: 0.5971 T22: 0.2131 REMARK 3 T33: 0.2206 T12: -0.0300 REMARK 3 T13: 0.0066 T23: -0.0413 REMARK 3 L TENSOR REMARK 3 L11: 4.8007 L22: 3.5108 REMARK 3 L33: 4.4476 L12: 1.8801 REMARK 3 L13: -1.9848 L23: -0.8405 REMARK 3 S TENSOR REMARK 3 S11: -0.3576 S12: 0.5496 S13: -0.0219 REMARK 3 S21: -1.1113 S22: 0.3175 S23: -0.1733 REMARK 3 S31: -0.2519 S32: -0.2887 S33: 0.0455 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KOE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 22-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300053972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44570 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 44.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.07900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 2000 MME, 100MM TRIS-HCL, PH REMARK 280 8.5, 10MM NICKEL(II) CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 59.70150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.46868 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.37033 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 59.70150 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 34.46868 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.37033 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 59.70150 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 34.46868 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.37033 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 68.93735 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 56.74067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 68.93735 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 56.74067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 68.93735 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 56.74067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS A 116 O3 PO4 A 302 1.95 REMARK 500 NE2 HIS B 169 O3 PO4 B 302 2.01 REMARK 500 O GLY A 197 NZ LYS A 199 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 531 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 163 NE2 REMARK 620 2 HEM A 301 NA 97.0 REMARK 620 3 HEM A 301 NB 87.1 90.1 REMARK 620 4 HEM A 301 NC 86.3 176.7 90.5 REMARK 620 5 HEM A 301 ND 99.5 89.8 173.3 89.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 163 NE2 REMARK 620 2 HEM B 301 NA 98.1 REMARK 620 3 HEM B 301 NB 95.0 92.1 REMARK 620 4 HEM B 301 NC 88.1 173.7 88.4 REMARK 620 5 HEM B 301 ND 96.5 86.5 168.4 91.8 REMARK 620 6 HOH B 440 O 175.4 77.4 84.3 96.4 84.2 REMARK 620 N 1 2 3 4 5 DBREF 9KOE A 3 249 UNP Q43758 Q43758_SOYBN 3 249 DBREF 9KOE B 3 249 UNP Q43758 Q43758_SOYBN 3 249 SEQADV 9KOE ASP A 14 UNP Q43758 LYS 14 ENGINEERED MUTATION SEQADV 9KOE PHE A 41 UNP Q43758 TRP 41 ENGINEERED MUTATION SEQADV 9KOE LYS A 112 UNP Q43758 GLU 112 ENGINEERED MUTATION SEQADV 9KOE PRO A 134 UNP Q43758 ALA 134 ENGINEERED MUTATION SEQADV 9KOE ASP B 14 UNP Q43758 LYS 14 ENGINEERED MUTATION SEQADV 9KOE PHE B 41 UNP Q43758 TRP 41 ENGINEERED MUTATION SEQADV 9KOE LYS B 112 UNP Q43758 GLU 112 ENGINEERED MUTATION SEQADV 9KOE PRO B 134 UNP Q43758 ALA 134 ENGINEERED MUTATION SEQRES 1 A 247 LYS SER TYR PRO THR VAL SER ALA ASP TYR GLN ASP ALA SEQRES 2 A 247 VAL GLU LYS ALA LYS LYS LYS LEU ARG GLY PHE ILE ALA SEQRES 3 A 247 GLU LYS ARG CYS ALA PRO LEU MET LEU ARG LEU ALA PHE SEQRES 4 A 247 HIS SER ALA GLY THR PHE ASP LYS GLY THR LYS THR GLY SEQRES 5 A 247 GLY PRO PHE GLY THR ILE LYS HIS PRO ALA GLU LEU ALA SEQRES 6 A 247 HIS SER ALA ASN ASN GLY LEU ASP ILE ALA VAL ARG LEU SEQRES 7 A 247 LEU GLU PRO LEU LYS ALA GLU PHE PRO ILE LEU SER TYR SEQRES 8 A 247 ALA ASP PHE TYR GLN LEU ALA GLY VAL VAL ALA VAL GLU SEQRES 9 A 247 VAL THR GLY GLY PRO LYS VAL PRO PHE HIS PRO GLY ARG SEQRES 10 A 247 GLU ASP LYS PRO GLU PRO PRO PRO GLU GLY ARG LEU PRO SEQRES 11 A 247 ASP PRO THR LYS GLY SER ASP HIS LEU ARG ASP VAL PHE SEQRES 12 A 247 GLY LYS ALA MET GLY LEU THR ASP GLN ASP ILE VAL ALA SEQRES 13 A 247 LEU SER GLY GLY HIS THR ILE GLY ALA ALA HIS LYS GLU SEQRES 14 A 247 ARG SER GLY PHE GLU GLY PRO TRP THR SER ASN PRO LEU SEQRES 15 A 247 ILE PHE ASP ASN SER TYR PHE THR GLU LEU LEU SER GLY SEQRES 16 A 247 GLU LYS GLU GLY LEU LEU GLN LEU PRO SER ASP LYS ALA SEQRES 17 A 247 LEU LEU SER ASP PRO VAL PHE ARG PRO LEU VAL ASP LYS SEQRES 18 A 247 TYR ALA ALA ASP GLU ASP ALA PHE PHE ALA ASP TYR ALA SEQRES 19 A 247 GLU ALA HIS GLN LYS LEU SER GLU LEU GLY PHE ALA ASP SEQRES 1 B 247 LYS SER TYR PRO THR VAL SER ALA ASP TYR GLN ASP ALA SEQRES 2 B 247 VAL GLU LYS ALA LYS LYS LYS LEU ARG GLY PHE ILE ALA SEQRES 3 B 247 GLU LYS ARG CYS ALA PRO LEU MET LEU ARG LEU ALA PHE SEQRES 4 B 247 HIS SER ALA GLY THR PHE ASP LYS GLY THR LYS THR GLY SEQRES 5 B 247 GLY PRO PHE GLY THR ILE LYS HIS PRO ALA GLU LEU ALA SEQRES 6 B 247 HIS SER ALA ASN ASN GLY LEU ASP ILE ALA VAL ARG LEU SEQRES 7 B 247 LEU GLU PRO LEU LYS ALA GLU PHE PRO ILE LEU SER TYR SEQRES 8 B 247 ALA ASP PHE TYR GLN LEU ALA GLY VAL VAL ALA VAL GLU SEQRES 9 B 247 VAL THR GLY GLY PRO LYS VAL PRO PHE HIS PRO GLY ARG SEQRES 10 B 247 GLU ASP LYS PRO GLU PRO PRO PRO GLU GLY ARG LEU PRO SEQRES 11 B 247 ASP PRO THR LYS GLY SER ASP HIS LEU ARG ASP VAL PHE SEQRES 12 B 247 GLY LYS ALA MET GLY LEU THR ASP GLN ASP ILE VAL ALA SEQRES 13 B 247 LEU SER GLY GLY HIS THR ILE GLY ALA ALA HIS LYS GLU SEQRES 14 B 247 ARG SER GLY PHE GLU GLY PRO TRP THR SER ASN PRO LEU SEQRES 15 B 247 ILE PHE ASP ASN SER TYR PHE THR GLU LEU LEU SER GLY SEQRES 16 B 247 GLU LYS GLU GLY LEU LEU GLN LEU PRO SER ASP LYS ALA SEQRES 17 B 247 LEU LEU SER ASP PRO VAL PHE ARG PRO LEU VAL ASP LYS SEQRES 18 B 247 TYR ALA ALA ASP GLU ASP ALA PHE PHE ALA ASP TYR ALA SEQRES 19 B 247 GLU ALA HIS GLN LYS LEU SER GLU LEU GLY PHE ALA ASP HET HEM A 301 43 HET PO4 A 302 5 HET PO4 A 303 5 HET HEM B 301 43 HET PO4 B 302 5 HET PO4 B 303 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM PO4 PHOSPHATE ION HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 PO4 4(O4 P 3-) FORMUL 9 HOH *303(H2 O) HELIX 1 AA1 SER A 9 ARG A 31 1 23 HELIX 2 AA2 CYS A 32 GLY A 45 1 14 HELIX 3 AA3 GLY A 58 LYS A 61 5 4 HELIX 4 AA4 HIS A 62 ALA A 67 1 6 HELIX 5 AA5 HIS A 68 ASN A 72 5 5 HELIX 6 AA6 GLY A 73 GLU A 87 1 15 HELIX 7 AA7 SER A 92 THR A 108 1 17 HELIX 8 AA8 GLY A 137 GLY A 146 1 10 HELIX 9 AA9 THR A 152 GLY A 161 1 10 HELIX 10 AB1 GLY A 162 ILE A 165 5 4 HELIX 11 AB2 HIS A 169 GLY A 174 1 6 HELIX 12 AB3 ASN A 188 GLY A 197 1 10 HELIX 13 AB4 LEU A 205 LEU A 211 1 7 HELIX 14 AB5 LEU A 212 ASP A 214 5 3 HELIX 15 AB6 VAL A 216 ASP A 227 1 12 HELIX 16 AB7 ASP A 227 GLU A 244 1 18 HELIX 17 AB8 SER B 9 ARG B 31 1 23 HELIX 18 AB9 CYS B 32 GLY B 45 1 14 HELIX 19 AC1 GLY B 58 LYS B 61 5 4 HELIX 20 AC2 HIS B 62 ALA B 67 1 6 HELIX 21 AC3 HIS B 68 ASN B 72 5 5 HELIX 22 AC4 GLY B 73 PHE B 88 1 16 HELIX 23 AC5 SER B 92 THR B 108 1 17 HELIX 24 AC6 GLY B 137 GLY B 146 1 10 HELIX 25 AC7 THR B 152 GLY B 161 1 10 HELIX 26 AC8 GLY B 162 ILE B 165 5 4 HELIX 27 AC9 HIS B 169 GLY B 174 1 6 HELIX 28 AD1 ASN B 188 GLY B 197 1 10 HELIX 29 AD2 LEU B 205 LEU B 211 1 7 HELIX 30 AD3 LEU B 212 ASP B 214 5 3 HELIX 31 AD4 VAL B 216 ASP B 227 1 12 HELIX 32 AD5 ASP B 227 GLU B 244 1 18 SHEET 1 AA1 2 ALA A 167 ALA A 168 0 SHEET 2 AA1 2 GLY A 177 PRO A 178 -1 O GLY A 177 N ALA A 168 SHEET 1 AA2 2 ALA B 167 ALA B 168 0 SHEET 2 AA2 2 GLY B 177 PRO B 178 -1 O GLY B 177 N ALA B 168 LINK NE2 HIS A 163 FE HEM A 301 1555 1555 2.13 LINK NE2 HIS B 163 FE HEM B 301 1555 1555 2.06 LINK FE HEM B 301 O HOH B 440 1555 1555 2.50 CRYST1 119.403 119.403 85.111 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008375 0.004835 0.000000 0.00000 SCALE2 0.000000 0.009671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011749 0.00000 CONECT 1219 3831 CONECT 3113 3884 CONECT 3789 3793 3820 CONECT 3790 3796 3803 CONECT 3791 3806 3810 CONECT 3792 3813 3817 CONECT 3793 3789 3794 3827 CONECT 3794 3793 3795 3798 CONECT 3795 3794 3796 3797 CONECT 3796 3790 3795 3827 CONECT 3797 3795 CONECT 3798 3794 3799 CONECT 3799 3798 3800 CONECT 3800 3799 3801 3802 CONECT 3801 3800 CONECT 3802 3800 CONECT 3803 3790 3804 3828 CONECT 3804 3803 3805 3807 CONECT 3805 3804 3806 3808 CONECT 3806 3791 3805 3828 CONECT 3807 3804 CONECT 3808 3805 3809 CONECT 3809 3808 CONECT 3810 3791 3811 3829 CONECT 3811 3810 3812 3814 CONECT 3812 3811 3813 3815 CONECT 3813 3792 3812 3829 CONECT 3814 3811 CONECT 3815 3812 3816 CONECT 3816 3815 CONECT 3817 3792 3818 3830 CONECT 3818 3817 3819 3821 CONECT 3819 3818 3820 3822 CONECT 3820 3789 3819 3830 CONECT 3821 3818 CONECT 3822 3819 3823 CONECT 3823 3822 3824 CONECT 3824 3823 3825 3826 CONECT 3825 3824 CONECT 3826 3824 CONECT 3827 3793 3796 3831 CONECT 3828 3803 3806 3831 CONECT 3829 3810 3813 3831 CONECT 3830 3817 3820 3831 CONECT 3831 1219 3827 3828 3829 CONECT 3831 3830 CONECT 3832 3833 3834 3835 3836 CONECT 3833 3832 CONECT 3834 3832 CONECT 3835 3832 CONECT 3836 3832 CONECT 3837 3838 3839 3840 3841 CONECT 3838 3837 CONECT 3839 3837 CONECT 3840 3837 CONECT 3841 3837 CONECT 3842 3846 3873 CONECT 3843 3849 3856 CONECT 3844 3859 3863 CONECT 3845 3866 3870 CONECT 3846 3842 3847 3880 CONECT 3847 3846 3848 3851 CONECT 3848 3847 3849 3850 CONECT 3849 3843 3848 3880 CONECT 3850 3848 CONECT 3851 3847 3852 CONECT 3852 3851 3853 CONECT 3853 3852 3854 3855 CONECT 3854 3853 CONECT 3855 3853 CONECT 3856 3843 3857 3881 CONECT 3857 3856 3858 3860 CONECT 3858 3857 3859 3861 CONECT 3859 3844 3858 3881 CONECT 3860 3857 CONECT 3861 3858 3862 CONECT 3862 3861 CONECT 3863 3844 3864 3882 CONECT 3864 3863 3865 3867 CONECT 3865 3864 3866 3868 CONECT 3866 3845 3865 3882 CONECT 3867 3864 CONECT 3868 3865 3869 CONECT 3869 3868 CONECT 3870 3845 3871 3883 CONECT 3871 3870 3872 3874 CONECT 3872 3871 3873 3875 CONECT 3873 3842 3872 3883 CONECT 3874 3871 CONECT 3875 3872 3876 CONECT 3876 3875 3877 CONECT 3877 3876 3878 3879 CONECT 3878 3877 CONECT 3879 3877 CONECT 3880 3846 3849 3884 CONECT 3881 3856 3859 3884 CONECT 3882 3863 3866 3884 CONECT 3883 3870 3873 3884 CONECT 3884 3113 3880 3881 3882 CONECT 3884 3883 4106 CONECT 3885 3886 3887 3888 3889 CONECT 3886 3885 CONECT 3887 3885 CONECT 3888 3885 CONECT 3889 3885 CONECT 3890 3891 3892 3893 3894 CONECT 3891 3890 CONECT 3892 3890 CONECT 3893 3890 CONECT 3894 3890 CONECT 4106 3884 MASTER 468 0 6 32 4 0 0 6 4195 2 111 38 END