HEADER MEMBRANE PROTEIN 20-NOV-24 9KON TITLE SOLID-STATE NMR STRUCTURE OF VSSEMISWEET IN LIPID BILAYERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR TRANSPORTER SEMISWEET; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO SP. (STRAIN N418); SOURCE 3 ORGANISM_TAXID: 701176; SOURCE 4 GENE: VIBRN418_06191; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSPORTER, DIMER, SUGAR, MEMBRANE PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR Y.ZHANG,J.YANG REVDAT 1 04-DEC-24 9KON 0 JRNL AUTH Y.ZHANG,J.YANG JRNL TITL DIVERSE REGULATIONS OF FUNCTIONAL DIMERIZATION OF A SUGAR JRNL TITL 2 TRANSPORTER BY DIFFERENT INTERFACIAL LIPIDS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.47 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KON COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 21-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300053983. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8.0 REMARK 210 IONIC STRENGTH : 1 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 48 % W/W [U-13C; U-15N] REMARK 210 VSSEMISWEET, 29 % W/W E.COLI REMARK 210 LIPIDS, 23 % W/W H2O, 100% H2O; REMARK 210 48 % W/W [2-13C; U-15N] REMARK 210 VSSEMISWEET, 29 % W/W E.COLI REMARK 210 LIPIDS, 23 % W/W H2O, 100% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NCA; 2D DARR; 3D NCACX; 3D REMARK 210 NCOCX; 3D CONCA; 2D CORD REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRFAM-SPARKY 2.6, TOPSPIN 3.6, REMARK 210 NMRPIPE 3.0 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1024 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 11 H LYS A 15 1.57 REMARK 500 O PRO B 11 H LYS B 15 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 20 -165.43 -170.30 REMARK 500 1 SER A 21 -48.73 -152.01 REMARK 500 1 ASN A 51 78.19 -166.70 REMARK 500 1 HIS B 20 -165.41 -170.26 REMARK 500 1 SER B 21 -48.73 -152.03 REMARK 500 1 ASN B 51 78.19 -166.71 REMARK 500 2 ALA A 8 1.18 -68.42 REMARK 500 2 LYS A 50 27.94 45.82 REMARK 500 2 ASN A 51 75.24 -167.34 REMARK 500 2 ALA B 8 1.05 -68.48 REMARK 500 2 LYS B 50 28.07 45.81 REMARK 500 2 ASN B 51 74.67 -167.39 REMARK 500 3 ALA A 8 1.63 -64.06 REMARK 500 3 THR A 53 -11.91 -45.56 REMARK 500 3 ALA B 8 1.52 -64.10 REMARK 500 3 THR B 53 -11.96 -45.43 REMARK 500 4 ALA A 8 1.43 -62.93 REMARK 500 4 HIS A 20 -165.10 170.95 REMARK 500 4 SER A 21 -47.65 -134.32 REMARK 500 4 PRO A 52 138.29 -37.07 REMARK 500 4 THR A 53 -12.91 -44.90 REMARK 500 4 ALA B 8 1.47 -63.05 REMARK 500 4 HIS B 20 -165.28 170.94 REMARK 500 4 SER B 21 -47.60 -134.25 REMARK 500 4 PRO B 52 138.31 -37.15 REMARK 500 4 THR B 53 -12.90 -45.03 REMARK 500 5 ALA A 8 2.75 -67.36 REMARK 500 5 HIS A 20 -148.33 -176.16 REMARK 500 5 SER A 21 -48.78 -156.33 REMARK 500 5 ALA B 8 2.66 -67.19 REMARK 500 5 HIS B 20 -148.33 -176.16 REMARK 500 5 SER B 21 -49.05 -156.26 REMARK 500 6 THR A 53 -12.97 -44.21 REMARK 500 6 THR B 53 -13.07 -44.06 REMARK 500 7 ALA A 8 2.13 -62.87 REMARK 500 7 HIS A 20 -171.58 -170.54 REMARK 500 7 SER A 21 -48.01 -141.02 REMARK 500 7 ASN A 51 77.30 -166.59 REMARK 500 7 ALA B 8 2.18 -62.96 REMARK 500 7 HIS B 20 -171.53 -170.41 REMARK 500 7 SER B 21 -48.08 -140.98 REMARK 500 7 ASN B 51 77.54 -166.54 REMARK 500 8 ALA A 8 0.40 -66.55 REMARK 500 8 THR A 53 -10.87 -46.88 REMARK 500 8 ALA B 8 0.30 -66.51 REMARK 500 8 THR B 53 -10.69 -47.03 REMARK 500 9 ALA A 8 5.40 -66.58 REMARK 500 9 THR A 53 -13.41 -44.43 REMARK 500 9 ALA B 8 5.40 -66.42 REMARK 500 9 THR B 53 -13.45 -44.45 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36714 RELATED DB: BMRB REMARK 900 SOLID-STATE NMR STRUCTURE OF VSSEMISWEET IN LIPID BILAYERS DBREF 9KON A 1 80 UNP F9RBV9 SWEET_VIBSN 18 97 DBREF 9KON B 1 80 UNP F9RBV9 SWEET_VIBSN 18 97 SEQRES 1 A 80 MET GLY LEU ILE SER PRO LEU ALA THR MET PRO GLN LEU SEQRES 2 A 80 TYR LYS LEU TYR VAL SER HIS SER GLU HIS ALA LEU GLY SEQRES 3 A 80 LEU SER LEU THR THR TRP LEU LEU TYR SER PHE ILE ALA SEQRES 4 A 80 LEU LEU TRP THR ILE TYR GLY ILE TYR HIS LYS ASN PRO SEQRES 5 A 80 THR ILE TRP VAL GLY ASN CYS LEU GLY PHE LEU MET TYR SEQRES 6 A 80 VAL ALA MET VAL VAL GLY ILE ILE ALA HIS THR GLY GLY SEQRES 7 A 80 THR TYR SEQRES 1 B 80 MET GLY LEU ILE SER PRO LEU ALA THR MET PRO GLN LEU SEQRES 2 B 80 TYR LYS LEU TYR VAL SER HIS SER GLU HIS ALA LEU GLY SEQRES 3 B 80 LEU SER LEU THR THR TRP LEU LEU TYR SER PHE ILE ALA SEQRES 4 B 80 LEU LEU TRP THR ILE TYR GLY ILE TYR HIS LYS ASN PRO SEQRES 5 B 80 THR ILE TRP VAL GLY ASN CYS LEU GLY PHE LEU MET TYR SEQRES 6 B 80 VAL ALA MET VAL VAL GLY ILE ILE ALA HIS THR GLY GLY SEQRES 7 B 80 THR TYR HELIX 1 AA1 ILE A 4 ALA A 8 5 5 HELIX 2 AA2 THR A 9 HIS A 20 1 12 HELIX 3 AA3 SER A 28 TYR A 48 1 21 HELIX 4 AA4 THR A 53 GLY A 77 1 25 HELIX 5 AA5 ILE B 4 ALA B 8 5 5 HELIX 6 AA6 THR B 9 HIS B 20 1 12 HELIX 7 AA7 SER B 28 TYR B 48 1 21 HELIX 8 AA8 THR B 53 GLY B 77 1 25 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MODEL 2 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MODEL 3 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MODEL 4 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MODEL 5 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MODEL 6 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MODEL 7 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MODEL 8 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MODEL 9 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MODEL 10 TER 1275 TYR A 80 TER 2550 TYR B 80 ENDMDL MASTER 157 0 0 8 0 0 0 6 1262 2 0 14 END