HEADER BIOSYNTHETIC PROTEIN 23-NOV-24 9KPQ TITLE A THDP-DEPENDENT ENZYME BELONGING TO THE 1-DEOXY-D-XYLULOSE-5- TITLE 2 PHOSPHATE SYNTHASE (DXPS)-LIKE SUBFAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.2.1.7; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 28116; SOURCE 4 GENE: DHW41_08530, DWY24_16555, R4E93_11875; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS BOADS IS A THDP-DEPENDENT ENZYME BELONGING TO THE 1-DEOXY-D-XYLULOSE- KEYWDS 2 5-PHOSPHATE SYNTHASE (DXPS)-LIKE SUBFAMILY., BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.Y.XING,M.MA REVDAT 2 05-NOV-25 9KPQ 1 JRNL REVDAT 1 20-AUG-25 9KPQ 0 JRNL AUTH Y.DING,X.LUO,J.GUO,B.XING,H.LIN,H.MA,Y.WANG,M.LI,C.YE,S.YAN, JRNL AUTH 2 K.LIN,J.ZHANG,Y.ZHUO,Q.NIE,D.YANG,Z.ZHANG,Y.PANG,K.WANG, JRNL AUTH 3 M.MA,L.LAI,C.JIANG JRNL TITL IDENTIFICATION OF GUT MICROBIAL BILE ACID METABOLIC ENZYMES JRNL TITL 2 VIA AN AI-ASSISTED PIPELINE. JRNL REF CELL V. 188 6012 2025 JRNL REFN ISSN 1097-4172 JRNL PMID 40780197 JRNL DOI 10.1016/J.CELL.2025.07.017 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH W.HU,Z.LIU,Y.WEI,Q.BIAN,W.LAN,C.FAN,J.SONG,Q.SUN,X.ZHANG, REMARK 1 AUTH 2 Y.LIU,Y.GAO,Y.CHEN REMARK 1 TITL STRUCTURAL BASIS FOR SALMONELLA INFECTION BY TWO REMARK 1 TITL 2 MICROVIRIDAE PHAGES. REMARK 1 REF COMMUN BIOL V. 8 1166 2025 REMARK 1 REFN ESSN 2399-3642 REMARK 1 PMID 40770068 REMARK 1 DOI 10.1038/S42003-025-08595-7 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.DING,X.LUO,J.GUO,B.XING,H.LIN,H.MA,Y.WANG,M.LI,C.YE,S.YAN, REMARK 1 AUTH 2 K.LIN,J.ZHANG,Y.ZHUO,Q.NIE,D.YANG,Z.ZHANG,Y.PANG,K.WANG, REMARK 1 AUTH 3 M.MA,L.LAI,C.JIANG REMARK 1 TITL IDENTIFICATION OF GUT MICROBIAL BILE ACID METABOLIC ENZYMES REMARK 1 TITL 2 VIA AN AI-ASSISTED PIPELINE. REMARK 1 REF CELL 2025 REMARK 1 REFN ISSN 1097-4172 REMARK 1 PMID 40780197 REMARK 1 DOI 10.1016/J.CELL.2025.07.017 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 44157 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2325 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3173 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.55 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 345 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.606 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.294 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.222 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.752 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9374 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 8695 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12713 ; 1.781 ; 1.645 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20054 ; 1.282 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1166 ; 7.723 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 486 ;38.977 ;23.951 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1581 ;16.393 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;19.149 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1212 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10726 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2072 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4670 ; 1.961 ; 2.410 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4669 ; 1.961 ; 2.409 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5834 ; 2.999 ; 3.610 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5835 ; 2.999 ; 3.611 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4703 ; 2.363 ; 2.662 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4650 ; 2.293 ; 2.641 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6800 ; 3.687 ; 3.863 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10459 ; 5.467 ;28.453 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10319 ; 5.366 ;28.341 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9KPQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 25-NOV-24. REMARK 100 THE DEPOSITION ID IS D_1300049470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46470 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 48.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.10220 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.51 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42620 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE PH 6.0, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.82700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.89350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.82700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.89350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 HIS B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 63 63.32 -112.53 REMARK 500 VAL A 73 -54.36 78.89 REMARK 500 SER A 74 -1.85 86.14 REMARK 500 ASN A 138 18.75 -141.87 REMARK 500 MET A 169 115.12 -164.65 REMARK 500 SER A 179 -118.56 -95.50 REMARK 500 ALA A 181 -146.94 -91.98 REMARK 500 GLN A 368 -60.91 -96.22 REMARK 500 LEU A 370 -61.95 -96.05 REMARK 500 ASN A 408 -22.36 76.39 REMARK 500 LYS A 469 -54.09 73.41 REMARK 500 ARG A 503 -48.52 69.37 REMARK 500 LEU A 574 49.40 -93.11 REMARK 500 ASN B 63 68.48 -116.38 REMARK 500 VAL B 73 -52.80 71.86 REMARK 500 ASN B 138 20.85 -143.95 REMARK 500 MET B 169 117.10 -162.48 REMARK 500 SER B 179 -116.60 -93.71 REMARK 500 ALA B 181 -146.49 -104.37 REMARK 500 SER B 306 54.29 -109.54 REMARK 500 LEU B 370 -62.80 -98.92 REMARK 500 ASN B 408 -21.79 78.30 REMARK 500 LYS B 469 -54.55 71.49 REMARK 500 ARG B 503 -48.67 71.98 REMARK 500 LEU B 574 45.68 -89.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 147 OD1 REMARK 620 2 ASN A 176 OD1 87.0 REMARK 620 3 MET A 178 O 101.0 80.2 REMARK 620 4 TPP A 602 O1A 102.0 166.4 88.0 REMARK 620 5 TPP A 602 O3B 162.8 75.9 78.0 95.1 REMARK 620 6 HOH A 765 O 86.4 88.7 166.2 101.9 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 147 OD1 REMARK 620 2 ASN B 176 OD1 93.1 REMARK 620 3 MET B 178 O 96.9 80.6 REMARK 620 4 TPP B 602 O3B 173.4 80.4 83.2 REMARK 620 5 TPP B 602 O2A 88.3 163.9 83.3 98.3 REMARK 620 6 HOH B 731 O 88.6 93.4 172.1 90.7 102.7 REMARK 620 N 1 2 3 4 5 DBREF1 9KPQ A 4 588 UNP A0A1Y4PZZ8_BACOV DBREF2 9KPQ A A0A1Y4PZZ8 1 585 DBREF1 9KPQ B 4 588 UNP A0A1Y4PZZ8_BACOV DBREF2 9KPQ B A0A1Y4PZZ8 1 585 SEQADV 9KPQ GLY A 1 UNP A0A1Y4PZZ EXPRESSION TAG SEQADV 9KPQ SER A 2 UNP A0A1Y4PZZ EXPRESSION TAG SEQADV 9KPQ HIS A 3 UNP A0A1Y4PZZ EXPRESSION TAG SEQADV 9KPQ GLY B 1 UNP A0A1Y4PZZ EXPRESSION TAG SEQADV 9KPQ SER B 2 UNP A0A1Y4PZZ EXPRESSION TAG SEQADV 9KPQ HIS B 3 UNP A0A1Y4PZZ EXPRESSION TAG SEQRES 1 A 588 GLY SER HIS MET TYR LEU GLU ASN ILE TYR SER PRO ALA SEQRES 2 A 588 ASP VAL LYS LYS LEU SER VAL LYS GLU LEU ASN GLU LEU SEQRES 3 A 588 SER ASP GLU ILE ARG VAL SER LEU LEU GLN LYS LEU SER SEQRES 4 A 588 GLU HIS GLY GLY HIS PHE GLY PRO ASN PHE GLY MET VAL SEQRES 5 A 588 GLU ALA THR ILE ALA LEU HIS TYR VAL PHE ASN SER PRO SEQRES 6 A 588 LYS ASP LYS ILE VAL PHE ASP VAL SER HIS GLN SER TYR SEQRES 7 A 588 VAL HIS LYS MET LEU THR GLY ARG LYS ASN ALA PHE LEU SEQRES 8 A 588 HIS PRO GLU GLU TYR ASP LEU VAL SER GLY TYR THR GLU SEQRES 9 A 588 PRO GLN GLU SER GLU HIS ASP PHE PHE VAL ILE GLY HIS SEQRES 10 A 588 THR SER THR SER VAL SER LEU ALA THR GLY LEU ALA LYS SEQRES 11 A 588 GLY ARG ASP LEU THR GLY GLY ASN GLU ASN ILE ILE ALA SEQRES 12 A 588 VAL ILE GLY ASP GLY SER LEU SER GLY GLY GLU ALA PHE SEQRES 13 A 588 GLU GLY LEU ASP TYR ALA ALA GLU LEU GLY THR ASN MET SEQRES 14 A 588 ILE ILE ILE VAL ASN ASP ASN GLN MET SER ILE ALA GLU SEQRES 15 A 588 ASN HIS GLY GLY LEU TYR ARG ASN LEU LYS GLU LEU ARG SEQRES 16 A 588 ASP SER ASN GLY GLN CYS GLU CYS ASN PHE PHE LYS ALA SEQRES 17 A 588 MET GLY LEU ASP TYR ILE TYR VAL ASN ASP GLY ASN ASP SEQRES 18 A 588 VAL GLN ALA LEU ILE GLU ALA PHE SER LYS VAL LYS ASP SEQRES 19 A 588 ILE GLN HIS PRO ILE VAL VAL HIS ILE ASN THR LEU LYS SEQRES 20 A 588 GLY LYS GLY TYR GLU ARG ALA GLU GLN ASP LYS GLU THR SEQRES 21 A 588 TYR HIS TRP ARG THR PRO PHE ASN PRO GLU THR GLY GLU SEQRES 22 A 588 ALA LYS VAL SER TYR GLU GLU GLU ASP TYR SER GLU VAL SEQRES 23 A 588 THR ALA GLN TYR LEU LEU LYS LYS MET LYS GLU ASP SER SEQRES 24 A 588 ARG VAL VAL THR ILE THR SER GLY THR PRO ALA VAL LEU SEQRES 25 A 588 GLY PHE THR PRO ASP ARG ARG LYS GLU ALA GLY LYS GLN SEQRES 26 A 588 PHE VAL ASP VAL GLY ILE ALA GLU GLU HIS ALA VAL ALA SEQRES 27 A 588 LEU ALA SER GLY ILE ALA ALA ASN GLY GLY LYS PRO VAL SEQRES 28 A 588 TYR GLY VAL TYR SER THR PHE ILE GLN ARG SER TYR ASP SEQRES 29 A 588 GLN LEU SER GLN ASP LEU CYS ILE ASN ASN ASN PRO ALA SEQRES 30 A 588 VAL LEU LEU VAL PHE TRP GLY THR LEU SER GLY MET ASN SEQRES 31 A 588 ASP VAL THR HIS LEU CYS PHE PHE ASP ILE PRO LEU ILE SEQRES 32 A 588 SER ASN ILE PRO ASN MET VAL TYR LEU ALA PRO THR CYS SEQRES 33 A 588 LYS GLU GLU TYR LEU ALA MET LEU GLU TRP SER ILE ARG SEQRES 34 A 588 GLN ASN GLU HIS PRO VAL ALA ILE ARG VAL PRO ALA THR SEQRES 35 A 588 ASP VAL ILE THR CYS GLY GLU PRO VAL GLU THR ASP TYR SEQRES 36 A 588 SER VAL LEU ASN ARG TYR LYS VAL THR HIS ARG GLY ALA SEQRES 37 A 588 LYS VAL ALA ILE LEU ALA LEU GLY SER PHE TYR GLY LEU SEQRES 38 A 588 GLY GLN SER VAL ALA SER LEU LEU LYS GLU LYS ALA ASN SEQRES 39 A 588 ILE ASP ALA THR LEU ILE ASN PRO ARG TYR ILE THR GLY SEQRES 40 A 588 VAL ASP ASN GLU LEU MET ASP GLU LEU LYS ALA ASP HIS SEQRES 41 A 588 GLU LEU VAL ILE THR LEU GLU ASP GLY VAL LEU ASP GLY SEQRES 42 A 588 GLY PHE GLY GLU LYS ILE ALA ARG TYR TYR GLY ALA THR SEQRES 43 A 588 ASN MET LYS VAL LEU ASN PHE GLY ALA LYS LYS GLU PHE SEQRES 44 A 588 VAL ASP ARG TYR ASP ILE GLN GLU PHE LEU ARG ALA ASN SEQRES 45 A 588 HIS LEU THR ASP GLU GLN ILE VAL GLU ASP ILE THR ALA SEQRES 46 A 588 VAL ILE GLY SEQRES 1 B 588 GLY SER HIS MET TYR LEU GLU ASN ILE TYR SER PRO ALA SEQRES 2 B 588 ASP VAL LYS LYS LEU SER VAL LYS GLU LEU ASN GLU LEU SEQRES 3 B 588 SER ASP GLU ILE ARG VAL SER LEU LEU GLN LYS LEU SER SEQRES 4 B 588 GLU HIS GLY GLY HIS PHE GLY PRO ASN PHE GLY MET VAL SEQRES 5 B 588 GLU ALA THR ILE ALA LEU HIS TYR VAL PHE ASN SER PRO SEQRES 6 B 588 LYS ASP LYS ILE VAL PHE ASP VAL SER HIS GLN SER TYR SEQRES 7 B 588 VAL HIS LYS MET LEU THR GLY ARG LYS ASN ALA PHE LEU SEQRES 8 B 588 HIS PRO GLU GLU TYR ASP LEU VAL SER GLY TYR THR GLU SEQRES 9 B 588 PRO GLN GLU SER GLU HIS ASP PHE PHE VAL ILE GLY HIS SEQRES 10 B 588 THR SER THR SER VAL SER LEU ALA THR GLY LEU ALA LYS SEQRES 11 B 588 GLY ARG ASP LEU THR GLY GLY ASN GLU ASN ILE ILE ALA SEQRES 12 B 588 VAL ILE GLY ASP GLY SER LEU SER GLY GLY GLU ALA PHE SEQRES 13 B 588 GLU GLY LEU ASP TYR ALA ALA GLU LEU GLY THR ASN MET SEQRES 14 B 588 ILE ILE ILE VAL ASN ASP ASN GLN MET SER ILE ALA GLU SEQRES 15 B 588 ASN HIS GLY GLY LEU TYR ARG ASN LEU LYS GLU LEU ARG SEQRES 16 B 588 ASP SER ASN GLY GLN CYS GLU CYS ASN PHE PHE LYS ALA SEQRES 17 B 588 MET GLY LEU ASP TYR ILE TYR VAL ASN ASP GLY ASN ASP SEQRES 18 B 588 VAL GLN ALA LEU ILE GLU ALA PHE SER LYS VAL LYS ASP SEQRES 19 B 588 ILE GLN HIS PRO ILE VAL VAL HIS ILE ASN THR LEU LYS SEQRES 20 B 588 GLY LYS GLY TYR GLU ARG ALA GLU GLN ASP LYS GLU THR SEQRES 21 B 588 TYR HIS TRP ARG THR PRO PHE ASN PRO GLU THR GLY GLU SEQRES 22 B 588 ALA LYS VAL SER TYR GLU GLU GLU ASP TYR SER GLU VAL SEQRES 23 B 588 THR ALA GLN TYR LEU LEU LYS LYS MET LYS GLU ASP SER SEQRES 24 B 588 ARG VAL VAL THR ILE THR SER GLY THR PRO ALA VAL LEU SEQRES 25 B 588 GLY PHE THR PRO ASP ARG ARG LYS GLU ALA GLY LYS GLN SEQRES 26 B 588 PHE VAL ASP VAL GLY ILE ALA GLU GLU HIS ALA VAL ALA SEQRES 27 B 588 LEU ALA SER GLY ILE ALA ALA ASN GLY GLY LYS PRO VAL SEQRES 28 B 588 TYR GLY VAL TYR SER THR PHE ILE GLN ARG SER TYR ASP SEQRES 29 B 588 GLN LEU SER GLN ASP LEU CYS ILE ASN ASN ASN PRO ALA SEQRES 30 B 588 VAL LEU LEU VAL PHE TRP GLY THR LEU SER GLY MET ASN SEQRES 31 B 588 ASP VAL THR HIS LEU CYS PHE PHE ASP ILE PRO LEU ILE SEQRES 32 B 588 SER ASN ILE PRO ASN MET VAL TYR LEU ALA PRO THR CYS SEQRES 33 B 588 LYS GLU GLU TYR LEU ALA MET LEU GLU TRP SER ILE ARG SEQRES 34 B 588 GLN ASN GLU HIS PRO VAL ALA ILE ARG VAL PRO ALA THR SEQRES 35 B 588 ASP VAL ILE THR CYS GLY GLU PRO VAL GLU THR ASP TYR SEQRES 36 B 588 SER VAL LEU ASN ARG TYR LYS VAL THR HIS ARG GLY ALA SEQRES 37 B 588 LYS VAL ALA ILE LEU ALA LEU GLY SER PHE TYR GLY LEU SEQRES 38 B 588 GLY GLN SER VAL ALA SER LEU LEU LYS GLU LYS ALA ASN SEQRES 39 B 588 ILE ASP ALA THR LEU ILE ASN PRO ARG TYR ILE THR GLY SEQRES 40 B 588 VAL ASP ASN GLU LEU MET ASP GLU LEU LYS ALA ASP HIS SEQRES 41 B 588 GLU LEU VAL ILE THR LEU GLU ASP GLY VAL LEU ASP GLY SEQRES 42 B 588 GLY PHE GLY GLU LYS ILE ALA ARG TYR TYR GLY ALA THR SEQRES 43 B 588 ASN MET LYS VAL LEU ASN PHE GLY ALA LYS LYS GLU PHE SEQRES 44 B 588 VAL ASP ARG TYR ASP ILE GLN GLU PHE LEU ARG ALA ASN SEQRES 45 B 588 HIS LEU THR ASP GLU GLN ILE VAL GLU ASP ILE THR ALA SEQRES 46 B 588 VAL ILE GLY HET MG A 601 1 HET TPP A 602 26 HET MG B 601 1 HET TPP B 602 26 HETNAM MG MAGNESIUM ION HETNAM TPP THIAMINE DIPHOSPHATE FORMUL 3 MG 2(MG 2+) FORMUL 4 TPP 2(C12 H19 N4 O7 P2 S 1+) FORMUL 7 HOH *345(H2 O) HELIX 1 AA1 TYR A 5 ILE A 9 5 5 HELIX 2 AA2 SER A 11 LYS A 16 1 6 HELIX 3 AA3 SER A 19 GLY A 42 1 24 HELIX 4 AA4 HIS A 44 GLY A 50 1 7 HELIX 5 AA5 MET A 51 PHE A 62 1 12 HELIX 6 AA6 SER A 77 THR A 84 1 8 HELIX 7 AA7 LYS A 87 HIS A 92 1 6 HELIX 8 AA8 PRO A 93 VAL A 99 5 7 HELIX 9 AA9 THR A 120 THR A 135 1 16 HELIX 10 AB1 GLY A 148 SER A 151 5 4 HELIX 11 AB2 GLY A 152 ALA A 163 1 12 HELIX 12 AB3 GLY A 186 SER A 197 1 12 HELIX 13 AB4 ASN A 204 MET A 209 1 6 HELIX 14 AB5 ASP A 221 LYS A 233 1 13 HELIX 15 AB6 TYR A 251 ASP A 257 1 7 HELIX 16 AB7 ASP A 257 HIS A 262 1 6 HELIX 17 AB8 ASP A 282 ASP A 298 1 17 HELIX 18 AB9 THR A 308 GLY A 313 5 6 HELIX 19 AC1 THR A 315 GLY A 323 1 9 HELIX 20 AC2 ALA A 332 ASN A 346 1 15 HELIX 21 AC3 SER A 356 GLN A 360 1 5 HELIX 22 AC4 SER A 362 GLN A 368 1 7 HELIX 23 AC5 ASP A 391 LEU A 395 5 5 HELIX 24 AC6 PHE A 398 SER A 404 1 7 HELIX 25 AC7 CYS A 416 GLN A 430 1 15 HELIX 26 AC8 PHE A 478 ASN A 494 1 17 HELIX 27 AC9 ASP A 509 LEU A 516 1 8 HELIX 28 AD1 GLY A 534 TYR A 543 1 10 HELIX 29 AD2 ASP A 564 ASN A 572 1 9 HELIX 30 AD3 THR A 575 GLY A 588 1 14 HELIX 31 AD4 MET B 4 ILE B 9 5 6 HELIX 32 AD5 SER B 11 LYS B 16 1 6 HELIX 33 AD6 SER B 19 GLY B 42 1 24 HELIX 34 AD7 HIS B 44 MET B 51 1 8 HELIX 35 AD8 MET B 51 PHE B 62 1 12 HELIX 36 AD9 SER B 77 THR B 84 1 8 HELIX 37 AE1 LYS B 87 HIS B 92 1 6 HELIX 38 AE2 PRO B 93 VAL B 99 5 7 HELIX 39 AE3 THR B 120 THR B 135 1 16 HELIX 40 AE4 GLY B 148 SER B 151 5 4 HELIX 41 AE5 GLY B 152 ALA B 163 1 12 HELIX 42 AE6 GLY B 186 SER B 197 1 12 HELIX 43 AE7 ASN B 204 MET B 209 1 6 HELIX 44 AE8 ASP B 221 LYS B 233 1 13 HELIX 45 AE9 TYR B 251 ASP B 257 1 7 HELIX 46 AF1 ASP B 257 HIS B 262 1 6 HELIX 47 AF2 ASP B 282 ASP B 298 1 17 HELIX 48 AF3 THR B 308 GLY B 313 5 6 HELIX 49 AF4 THR B 315 GLY B 323 1 9 HELIX 50 AF5 ALA B 332 ASN B 346 1 15 HELIX 51 AF6 SER B 356 GLN B 360 1 5 HELIX 52 AF7 SER B 362 ASP B 369 1 8 HELIX 53 AF8 ASP B 391 LEU B 395 5 5 HELIX 54 AF9 PHE B 398 SER B 404 1 7 HELIX 55 AG1 CYS B 416 GLN B 430 1 15 HELIX 56 AG2 PHE B 478 ASN B 494 1 17 HELIX 57 AG3 ASP B 509 LEU B 516 1 8 HELIX 58 AG4 GLY B 534 TYR B 543 1 10 HELIX 59 AG5 ASP B 564 ASN B 572 1 9 HELIX 60 AG6 THR B 575 GLY B 588 1 14 SHEET 1 AA1 5 LYS A 68 PHE A 71 0 SHEET 2 AA1 5 ILE A 141 GLY A 146 1 O VAL A 144 N VAL A 70 SHEET 3 AA1 5 MET A 169 ASP A 175 1 O ILE A 172 N ALA A 143 SHEET 4 AA1 5 PRO A 238 ASN A 244 1 O VAL A 241 N ILE A 171 SHEET 5 AA1 5 ASP A 212 VAL A 216 1 N VAL A 216 O HIS A 242 SHEET 1 AA2 6 PHE A 326 ASP A 328 0 SHEET 2 AA2 6 VAL A 301 THR A 305 1 N THR A 303 O VAL A 327 SHEET 3 AA2 6 LYS A 349 TYR A 355 1 O VAL A 351 N ILE A 304 SHEET 4 AA2 6 VAL A 378 PHE A 382 1 O LEU A 380 N TYR A 352 SHEET 5 AA2 6 VAL A 435 ARG A 438 1 O VAL A 435 N LEU A 379 SHEET 6 AA2 6 VAL A 410 LEU A 412 1 N VAL A 410 O ALA A 436 SHEET 1 AA3 5 LYS A 462 HIS A 465 0 SHEET 2 AA3 5 THR A 498 ASN A 501 -1 O ASN A 501 N LYS A 462 SHEET 3 AA3 5 LYS A 469 ALA A 474 1 N ILE A 472 O THR A 498 SHEET 4 AA3 5 HIS A 520 VAL A 530 1 O ILE A 524 N LEU A 473 SHEET 5 AA3 5 LYS A 549 ALA A 555 1 O LYS A 549 N VAL A 523 SHEET 1 AA4 5 LYS B 68 PHE B 71 0 SHEET 2 AA4 5 ILE B 141 GLY B 146 1 O VAL B 144 N VAL B 70 SHEET 3 AA4 5 MET B 169 ASP B 175 1 O ILE B 172 N ALA B 143 SHEET 4 AA4 5 PRO B 238 ASN B 244 1 O ILE B 239 N MET B 169 SHEET 5 AA4 5 ASP B 212 VAL B 216 1 N VAL B 216 O HIS B 242 SHEET 1 AA5 6 PHE B 326 ASP B 328 0 SHEET 2 AA5 6 VAL B 301 THR B 305 1 N THR B 303 O VAL B 327 SHEET 3 AA5 6 LYS B 349 TYR B 355 1 O VAL B 351 N VAL B 302 SHEET 4 AA5 6 VAL B 378 PHE B 382 1 O LEU B 380 N TYR B 352 SHEET 5 AA5 6 VAL B 435 ARG B 438 1 O VAL B 435 N LEU B 379 SHEET 6 AA5 6 VAL B 410 LEU B 412 1 N LEU B 412 O ARG B 438 SHEET 1 AA6 5 LYS B 462 HIS B 465 0 SHEET 2 AA6 5 THR B 498 ASN B 501 -1 O ASN B 501 N LYS B 462 SHEET 3 AA6 5 LYS B 469 ALA B 474 1 N ILE B 472 O THR B 498 SHEET 4 AA6 5 HIS B 520 VAL B 530 1 O ILE B 524 N LEU B 473 SHEET 5 AA6 5 LYS B 549 ALA B 555 1 O PHE B 553 N THR B 525 SSBOND 1 CYS A 416 CYS A 447 1555 1555 2.03 SSBOND 2 CYS B 416 CYS B 447 1555 1555 2.04 LINK OD1 ASP A 147 MG MG A 601 1555 1555 1.92 LINK OD1 ASN A 176 MG MG A 601 1555 1555 2.38 LINK O MET A 178 MG MG A 601 1555 1555 2.30 LINK MG MG A 601 O1A TPP A 602 1555 1555 2.05 LINK MG MG A 601 O3B TPP A 602 1555 1555 2.19 LINK MG MG A 601 O HOH A 765 1555 1555 2.12 LINK OD1 ASP B 147 MG MG B 601 1555 1555 2.10 LINK OD1 ASN B 176 MG MG B 601 1555 1555 2.26 LINK O MET B 178 MG MG B 601 1555 1555 2.24 LINK MG MG B 601 O3B TPP B 602 1555 1555 2.02 LINK MG MG B 601 O2A TPP B 602 1555 1555 2.19 LINK MG MG B 601 O HOH B 731 1555 1555 2.20 CISPEP 1 SER A 64 PRO A 65 0 4.58 CISPEP 2 SER B 64 PRO B 65 0 5.64 CRYST1 145.654 71.787 118.447 90.00 97.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006866 0.000000 0.000849 0.00000 SCALE2 0.000000 0.013930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008507 0.00000 CONECT 1118 9141 CONECT 1325 9141 CONECT 1339 9141 CONECT 3212 3464 CONECT 3464 3212 CONECT 5692 9168 CONECT 5899 9168 CONECT 5913 9168 CONECT 7786 8038 CONECT 8038 7786 CONECT 9141 1118 1325 1339 9161 CONECT 9141 9167 9259 CONECT 9142 9143 9149 CONECT 9143 9142 9144 9145 CONECT 9144 9143 CONECT 9145 9143 9146 CONECT 9146 9145 9147 9148 CONECT 9147 9146 CONECT 9148 9146 9149 9150 CONECT 9149 9142 9148 CONECT 9150 9148 9151 CONECT 9151 9150 9152 9155 CONECT 9152 9151 9153 CONECT 9153 9152 9154 CONECT 9154 9153 9155 9157 CONECT 9155 9151 9154 9156 CONECT 9156 9155 CONECT 9157 9154 9158 CONECT 9158 9157 9159 CONECT 9159 9158 9160 CONECT 9160 9159 9161 9162 9163 CONECT 9161 9141 9160 CONECT 9162 9160 CONECT 9163 9160 9164 CONECT 9164 9163 9165 9166 9167 CONECT 9165 9164 CONECT 9166 9164 CONECT 9167 9141 9164 CONECT 9168 5692 5899 5913 9189 CONECT 9168 9194 9389 CONECT 9169 9170 9176 CONECT 9170 9169 9171 9172 CONECT 9171 9170 CONECT 9172 9170 9173 CONECT 9173 9172 9174 9175 CONECT 9174 9173 CONECT 9175 9173 9176 9177 CONECT 9176 9169 9175 CONECT 9177 9175 9178 CONECT 9178 9177 9179 9182 CONECT 9179 9178 9180 CONECT 9180 9179 9181 CONECT 9181 9180 9182 9184 CONECT 9182 9178 9181 9183 CONECT 9183 9182 CONECT 9184 9181 9185 CONECT 9185 9184 9186 CONECT 9186 9185 9187 CONECT 9187 9186 9188 9189 9190 CONECT 9188 9187 CONECT 9189 9168 9187 CONECT 9190 9187 9191 CONECT 9191 9190 9192 9193 9194 CONECT 9192 9191 CONECT 9193 9191 CONECT 9194 9168 9191 CONECT 9259 9141 CONECT 9389 9168 MASTER 342 0 4 60 32 0 0 6 9537 2 68 92 END