HEADER OXIDOREDUCTASE 02-DEC-24 9KTP TITLE FE(II)/2-OXOGLUTARATE-DEPENDENT DIOXYGENASE UCSF IN COMPLEXED WITH NI TITLE 2 AND N-OXALYLGLYCINE (NOG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE UCSF; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: UCS1025A PYRROLIZIDINONE BIOSYNTHESIS CLUSTER PROTEIN F; COMPND 5 EC: 1.14.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACREMONIUM SP.; SOURCE 3 ORGANISM_TAXID: 2046025; SOURCE 4 GENE: UCSF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS DIOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.ZHAO,Y.NIE REVDAT 1 10-JUN-26 9KTP 0 JRNL AUTH S.ZHAO,Y.NIE JRNL TITL MOLECULAR INSIGHTS INTO BIFUNCTIONAL CATALYSIS OF FE(II) AND JRNL TITL 2 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE UCSF-MEDIATED RING JRNL TITL 3 FORMATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 38651 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1640 - 4.9632 0.98 2786 154 0.1705 0.2155 REMARK 3 2 4.9632 - 3.9400 1.00 2678 147 0.1455 0.1975 REMARK 3 3 3.9400 - 3.4421 1.00 2621 149 0.1634 0.2209 REMARK 3 4 3.4421 - 3.1275 1.00 2639 156 0.1853 0.2735 REMARK 3 5 3.1275 - 2.9034 1.00 2601 172 0.1974 0.2868 REMARK 3 6 2.9034 - 2.7322 1.00 2607 143 0.2144 0.2614 REMARK 3 7 2.7322 - 2.5954 1.00 2583 159 0.2132 0.2983 REMARK 3 8 2.5954 - 2.4824 1.00 2613 136 0.2179 0.3001 REMARK 3 9 2.4824 - 2.3868 0.99 2585 132 0.2209 0.3170 REMARK 3 10 2.3868 - 2.3045 1.00 2543 144 0.2286 0.2893 REMARK 3 11 2.3045 - 2.2324 1.00 2632 130 0.2361 0.3067 REMARK 3 12 2.2324 - 2.1686 1.00 2593 111 0.2296 0.3180 REMARK 3 13 2.1686 - 2.1115 1.00 2584 132 0.2443 0.3297 REMARK 3 14 2.1115 - 2.0600 1.00 2606 115 0.2546 0.3254 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5142 REMARK 3 ANGLE : 1.025 6987 REMARK 3 CHIRALITY : 0.061 765 REMARK 3 PLANARITY : 0.007 940 REMARK 3 DIHEDRAL : 12.202 3107 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5241 11.3259 13.7339 REMARK 3 T TENSOR REMARK 3 T11: 0.3932 T22: -0.2697 REMARK 3 T33: 0.1583 T12: -0.0575 REMARK 3 T13: 0.2156 T23: 0.1889 REMARK 3 L TENSOR REMARK 3 L11: 0.1438 L22: 0.1145 REMARK 3 L33: 0.0724 L12: -0.0002 REMARK 3 L13: -0.0568 L23: 0.0821 REMARK 3 S TENSOR REMARK 3 S11: -0.1485 S12: -0.0403 S13: -0.0170 REMARK 3 S21: 0.1489 S22: -0.0005 S23: 0.0805 REMARK 3 S31: 0.4420 S32: 0.0011 S33: -0.2162 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9867 40.8987 7.8645 REMARK 3 T TENSOR REMARK 3 T11: 0.1054 T22: 0.1645 REMARK 3 T33: 0.1614 T12: -0.0003 REMARK 3 T13: -0.0017 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.0103 L22: 0.0150 REMARK 3 L33: 0.0052 L12: 0.0136 REMARK 3 L13: 0.0034 L23: -0.0008 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: 0.0198 S13: 0.1116 REMARK 3 S21: 0.0576 S22: -0.0255 S23: -0.1103 REMARK 3 S31: -0.1358 S32: 0.0941 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6503 36.0506 9.1443 REMARK 3 T TENSOR REMARK 3 T11: 0.1512 T22: 0.1484 REMARK 3 T33: 0.1525 T12: -0.0012 REMARK 3 T13: 0.0268 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 0.0083 L22: 0.1287 REMARK 3 L33: 0.0160 L12: -0.0111 REMARK 3 L13: 0.0067 L23: -0.0359 REMARK 3 S TENSOR REMARK 3 S11: -0.0474 S12: 0.0515 S13: 0.0230 REMARK 3 S21: 0.1706 S22: -0.0362 S23: 0.0143 REMARK 3 S31: -0.1030 S32: 0.0518 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 132 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6856 18.9167 8.4435 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.1124 REMARK 3 T33: 0.1372 T12: 0.0762 REMARK 3 T13: 0.0633 T23: 0.0306 REMARK 3 L TENSOR REMARK 3 L11: 0.4277 L22: 0.3084 REMARK 3 L33: 0.3338 L12: -0.0161 REMARK 3 L13: 0.0024 L23: 0.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.1732 S12: 0.0409 S13: -0.1340 REMARK 3 S21: 0.1744 S22: 0.0470 S23: 0.1549 REMARK 3 S31: 0.3316 S32: 0.1909 S33: -0.1712 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 277 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7346 23.7294 6.3857 REMARK 3 T TENSOR REMARK 3 T11: 0.0906 T22: 0.2240 REMARK 3 T33: 0.1108 T12: 0.0342 REMARK 3 T13: 0.0109 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 0.1815 L22: 0.1690 REMARK 3 L33: 0.2423 L12: -0.0245 REMARK 3 L13: 0.0837 L23: 0.0316 REMARK 3 S TENSOR REMARK 3 S11: -0.2142 S12: 0.0107 S13: -0.0901 REMARK 3 S21: 0.1154 S22: -0.0237 S23: 0.0505 REMARK 3 S31: 0.1434 S32: 0.1197 S33: -0.0916 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3504 18.7444 14.0499 REMARK 3 T TENSOR REMARK 3 T11: 0.4125 T22: 0.6346 REMARK 3 T33: 0.4678 T12: 0.2383 REMARK 3 T13: -0.0618 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.0096 L22: 0.0009 REMARK 3 L33: -0.0002 L12: 0.0035 REMARK 3 L13: -0.0034 L23: -0.0014 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: 0.0065 S13: 0.0525 REMARK 3 S21: 0.0092 S22: 0.0830 S23: -0.0122 REMARK 3 S31: 0.0341 S32: 0.0630 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4522 38.1270 -27.8425 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.0528 REMARK 3 T33: 0.1602 T12: -0.0622 REMARK 3 T13: -0.1451 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 0.0634 L22: 0.0405 REMARK 3 L33: 0.1252 L12: -0.0502 REMARK 3 L13: -0.0526 L23: 0.0610 REMARK 3 S TENSOR REMARK 3 S11: -0.0866 S12: 0.1022 S13: -0.0403 REMARK 3 S21: -0.0809 S22: -0.0481 S23: 0.0942 REMARK 3 S31: -0.3327 S32: -0.1675 S33: -0.0802 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8769 11.9955 -23.9506 REMARK 3 T TENSOR REMARK 3 T11: 0.2457 T22: 0.1884 REMARK 3 T33: 0.1940 T12: 0.0014 REMARK 3 T13: -0.0155 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.0294 L22: 0.0013 REMARK 3 L33: 0.0208 L12: 0.0112 REMARK 3 L13: -0.0047 L23: -0.0073 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: -0.1396 S13: -0.0510 REMARK 3 S21: 0.0825 S22: 0.0425 S23: 0.0502 REMARK 3 S31: 0.3270 S32: 0.0687 S33: -0.0000 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7248 31.3203 -22.2476 REMARK 3 T TENSOR REMARK 3 T11: 0.1065 T22: 0.1420 REMARK 3 T33: 0.1043 T12: -0.0496 REMARK 3 T13: -0.0120 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 0.4666 L22: 0.4553 REMARK 3 L33: 0.2820 L12: 0.0966 REMARK 3 L13: 0.1355 L23: 0.3183 REMARK 3 S TENSOR REMARK 3 S11: -0.1216 S12: -0.0717 S13: 0.0215 REMARK 3 S21: -0.1837 S22: 0.0468 S23: 0.0566 REMARK 3 S31: -0.1622 S32: 0.1917 S33: -0.1616 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 270 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2104 30.9602 -17.5545 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.2079 REMARK 3 T33: 0.1078 T12: -0.0670 REMARK 3 T13: 0.0328 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 0.0828 L22: 0.1409 REMARK 3 L33: 0.0498 L12: 0.0651 REMARK 3 L13: 0.0042 L23: -0.0380 REMARK 3 S TENSOR REMARK 3 S11: 0.0356 S12: 0.0321 S13: 0.1009 REMARK 3 S21: 0.0038 S22: 0.0857 S23: 0.0420 REMARK 3 S31: -0.1495 S32: 0.1384 S33: 0.0471 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 314 THROUGH 328 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.5645 27.7461 -24.4114 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.5498 REMARK 3 T33: 0.3903 T12: -0.1071 REMARK 3 T13: -0.1263 T23: -0.1858 REMARK 3 L TENSOR REMARK 3 L11: 0.0231 L22: 0.0038 REMARK 3 L33: 0.0308 L12: -0.0087 REMARK 3 L13: -0.0274 L23: 0.0126 REMARK 3 S TENSOR REMARK 3 S11: 0.0819 S12: 0.0163 S13: -0.0114 REMARK 3 S21: 0.0017 S22: 0.0353 S23: -0.0185 REMARK 3 S31: 0.0956 S32: 0.0619 S33: 0.0185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 05-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300054197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 48.164 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.02100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 5C3Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30 % W/V PEG 2000, 0.1 M POTASSIUM REMARK 280 THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.00150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.92550 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.00150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 68.92550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 329 REMARK 465 LEU A 330 REMARK 465 THR A 331 REMARK 465 ALA A 332 REMARK 465 TYR A 333 REMARK 465 GLY B 84 REMARK 465 VAL B 85 REMARK 465 GLU B 86 REMARK 465 LYS B 87 REMARK 465 THR B 88 REMARK 465 ALA B 89 REMARK 465 SER B 90 REMARK 465 LEU B 91 REMARK 465 HIS B 92 REMARK 465 GLY B 93 REMARK 465 ASN B 94 REMARK 465 LEU B 95 REMARK 465 ILE B 96 REMARK 465 GLY B 97 REMARK 465 ARG B 98 REMARK 465 ARG B 99 REMARK 465 VAL B 100 REMARK 465 ASP B 101 REMARK 465 GLU B 102 REMARK 465 LYS B 103 REMARK 465 LEU B 329 REMARK 465 LEU B 330 REMARK 465 THR B 331 REMARK 465 ALA B 332 REMARK 465 TYR B 333 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 204 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP B 204 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 73 37.16 -153.37 REMARK 500 VAL A 207 -65.73 -93.53 REMARK 500 SER A 214 -155.09 -112.35 REMARK 500 THR A 267 -149.26 -138.17 REMARK 500 ALA B 72 53.26 -96.45 REMARK 500 ASP B 73 30.99 -82.52 REMARK 500 VAL B 207 -66.61 -90.26 REMARK 500 THR B 267 -150.72 -137.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 401 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 202 NE2 REMARK 620 2 ASP A 204 OD1 87.7 REMARK 620 3 HIS A 264 NE2 91.9 96.9 REMARK 620 4 OGA A 402 O2' 97.4 171.3 89.9 REMARK 620 5 OGA A 402 O1 89.5 94.9 168.2 78.3 REMARK 620 6 HOH A 509 O 177.7 91.9 90.4 82.6 88.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 401 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 202 NE2 REMARK 620 2 ASP B 204 OD1 87.3 REMARK 620 3 HIS B 264 NE2 86.0 98.6 REMARK 620 4 OGA B 402 O2 93.1 91.7 169.6 REMARK 620 5 OGA B 402 O2' 94.8 173.7 87.5 82.3 REMARK 620 6 HOH B 509 O 177.6 94.7 95.0 85.6 83.0 REMARK 620 N 1 2 3 4 5 DBREF1 9KTP A 1 333 UNP UCSF_ACRSP DBREF2 9KTP A A0A411KUQ7 1 333 DBREF1 9KTP B 1 333 UNP UCSF_ACRSP DBREF2 9KTP B A0A411KUQ7 1 333 SEQRES 1 A 333 MET GLY VAL PRO LEU LEU ASP VAL SER GLN LEU GLN ALA SEQRES 2 A 333 GLY PRO GLU ALA ARG LYS GLN TYR LEU GLN ALA LEU VAL SEQRES 3 A 333 GLN SER PHE ARG ASP TYR GLY PHE VAL ARG LEU THR LYS SEQRES 4 A 333 HIS ASP VAL PRO ALA LYS ARG VAL GLN ARG ILE PHE ASP SEQRES 5 A 333 LEU SER THR GLN MET PHE ASN LEU ASP ILE ASP SER LYS SEQRES 6 A 333 LEU GLU PHE ALA ASN ILE ALA ASP GLY SER PRO GLN ARG SEQRES 7 A 333 GLY TYR SER ALA VAL GLY VAL GLU LYS THR ALA SER LEU SEQRES 8 A 333 HIS GLY ASN LEU ILE GLY ARG ARG VAL ASP GLU LYS LEU SEQRES 9 A 333 THR ASP ALA ARG GLU HIS PHE ASP CYS GLY SER PRO LEU SEQRES 10 A 333 ASP LYS SER PHE ALA ASN ARG TRP PRO GLU LYS LEU GLN SEQRES 11 A 333 GLY PHE GLN GLN GLU LEU GLU SER PHE TYR PHE GLU LEU SEQRES 12 A 333 GLU GLN VAL THR ALA GLY ILE LEU GLY SER LEU GLU GLU SEQRES 13 A 333 ALA LEU ASN CYS PRO PRO GLY THR LEU ASN ASN MET ILE SEQRES 14 A 333 THR LYS GLU ASN ASN ALA SER GLU LEU ARG LEU ASN HIS SEQRES 15 A 333 TYR PRO PRO VAL PRO ALA GLY THR LEU ARG ASN GLY ASN SEQRES 16 A 333 VAL ALA ARG ILE TRP PRO HIS PHE ASP LEU GLY VAL ILE SEQRES 17 A 333 THR LEU LEU PHE THR SER ALA VAL GLY GLY LEU GLU VAL SEQRES 18 A 333 GLU ASP ARG ASN ALA PRO GLY PRO GLN THR PHE ILE PRO SEQRES 19 A 333 VAL GLU PRO GLU THR GLU ALA GLU LEU ILE VAL ASN ILE SEQRES 20 A 333 SER GLU THR LEU GLN ARG TRP THR ASP ASP HIS LEU PRO SEQRES 21 A 333 ALA GLY LEU HIS ARG VAL THR ILE PRO LYS ASP LEU ASP SEQRES 22 A 333 THR GLU ILE GLN ASN ASP ALA ASN VAL GLU ILE PRO GLY SEQRES 23 A 333 ARG TYR SER ILE ALA TYR LEU CYS LYS ALA ASP ARG GLU SEQRES 24 A 333 ALA ASP VAL GLY THR LEU PRO VAL PHE GLN THR GLY GLU SEQRES 25 A 333 ALA PRO ARG TYR LYS ALA MET THR ALA SER GLU TYR HIS SEQRES 26 A 333 ARG SER ARG LEU LEU THR ALA TYR SEQRES 1 B 333 MET GLY VAL PRO LEU LEU ASP VAL SER GLN LEU GLN ALA SEQRES 2 B 333 GLY PRO GLU ALA ARG LYS GLN TYR LEU GLN ALA LEU VAL SEQRES 3 B 333 GLN SER PHE ARG ASP TYR GLY PHE VAL ARG LEU THR LYS SEQRES 4 B 333 HIS ASP VAL PRO ALA LYS ARG VAL GLN ARG ILE PHE ASP SEQRES 5 B 333 LEU SER THR GLN MET PHE ASN LEU ASP ILE ASP SER LYS SEQRES 6 B 333 LEU GLU PHE ALA ASN ILE ALA ASP GLY SER PRO GLN ARG SEQRES 7 B 333 GLY TYR SER ALA VAL GLY VAL GLU LYS THR ALA SER LEU SEQRES 8 B 333 HIS GLY ASN LEU ILE GLY ARG ARG VAL ASP GLU LYS LEU SEQRES 9 B 333 THR ASP ALA ARG GLU HIS PHE ASP CYS GLY SER PRO LEU SEQRES 10 B 333 ASP LYS SER PHE ALA ASN ARG TRP PRO GLU LYS LEU GLN SEQRES 11 B 333 GLY PHE GLN GLN GLU LEU GLU SER PHE TYR PHE GLU LEU SEQRES 12 B 333 GLU GLN VAL THR ALA GLY ILE LEU GLY SER LEU GLU GLU SEQRES 13 B 333 ALA LEU ASN CYS PRO PRO GLY THR LEU ASN ASN MET ILE SEQRES 14 B 333 THR LYS GLU ASN ASN ALA SER GLU LEU ARG LEU ASN HIS SEQRES 15 B 333 TYR PRO PRO VAL PRO ALA GLY THR LEU ARG ASN GLY ASN SEQRES 16 B 333 VAL ALA ARG ILE TRP PRO HIS PHE ASP LEU GLY VAL ILE SEQRES 17 B 333 THR LEU LEU PHE THR SER ALA VAL GLY GLY LEU GLU VAL SEQRES 18 B 333 GLU ASP ARG ASN ALA PRO GLY PRO GLN THR PHE ILE PRO SEQRES 19 B 333 VAL GLU PRO GLU THR GLU ALA GLU LEU ILE VAL ASN ILE SEQRES 20 B 333 SER GLU THR LEU GLN ARG TRP THR ASP ASP HIS LEU PRO SEQRES 21 B 333 ALA GLY LEU HIS ARG VAL THR ILE PRO LYS ASP LEU ASP SEQRES 22 B 333 THR GLU ILE GLN ASN ASP ALA ASN VAL GLU ILE PRO GLY SEQRES 23 B 333 ARG TYR SER ILE ALA TYR LEU CYS LYS ALA ASP ARG GLU SEQRES 24 B 333 ALA ASP VAL GLY THR LEU PRO VAL PHE GLN THR GLY GLU SEQRES 25 B 333 ALA PRO ARG TYR LYS ALA MET THR ALA SER GLU TYR HIS SEQRES 26 B 333 ARG SER ARG LEU LEU THR ALA TYR HET NI A 401 1 HET OGA A 402 10 HET NI B 401 1 HET OGA B 402 10 HETNAM NI NICKEL (II) ION HETNAM OGA N-OXALYLGLYCINE FORMUL 3 NI 2(NI 2+) FORMUL 4 OGA 2(C4 H5 N O5) FORMUL 7 HOH *203(H2 O) HELIX 1 AA1 SER A 9 ALA A 13 5 5 HELIX 2 AA2 GLY A 14 GLY A 33 1 20 HELIX 3 AA3 PRO A 43 ASN A 59 1 17 HELIX 4 AA4 ASP A 61 GLU A 67 1 7 HELIX 5 AA5 GLY A 84 THR A 88 5 5 HELIX 6 AA6 GLY A 131 LEU A 158 1 28 HELIX 7 AA7 LEU A 165 ILE A 169 5 5 HELIX 8 AA8 ALA A 188 GLY A 194 1 7 HELIX 9 AA9 SER A 248 THR A 255 1 8 HELIX 10 AB1 PRO A 269 ASP A 279 5 11 HELIX 11 AB2 LEU A 305 GLN A 309 5 5 HELIX 12 AB3 THR A 320 ARG A 328 1 9 HELIX 13 AB4 SER B 9 GLY B 14 1 6 HELIX 14 AB5 GLY B 14 GLY B 33 1 20 HELIX 15 AB6 PRO B 43 ASN B 59 1 17 HELIX 16 AB7 ASP B 61 GLU B 67 1 7 HELIX 17 AB8 GLY B 131 LEU B 158 1 28 HELIX 18 AB9 LEU B 165 ILE B 169 5 5 HELIX 19 AC1 ALA B 188 GLY B 194 1 7 HELIX 20 AC2 SER B 248 THR B 255 1 8 HELIX 21 AC3 PRO B 269 THR B 274 5 6 HELIX 22 AC4 GLU B 275 ASP B 279 1 5 HELIX 23 AC5 LEU B 305 GLN B 309 5 5 HELIX 24 AC6 THR B 320 ARG B 328 1 9 SHEET 1 AA1 8 LEU A 5 ASP A 7 0 SHEET 2 AA1 8 PHE A 34 THR A 38 1 O ARG A 36 N LEU A 6 SHEET 3 AA1 8 LEU A 243 ILE A 247 -1 O LEU A 243 N LEU A 37 SHEET 4 AA1 8 ILE A 208 THR A 213 -1 N LEU A 211 O ILE A 244 SHEET 5 AA1 8 ARG A 287 LEU A 293 -1 O TYR A 292 N LEU A 210 SHEET 6 AA1 8 GLU A 177 TYR A 183 -1 N ARG A 179 O ALA A 291 SHEET 7 AA1 8 GLU A 109 CYS A 113 -1 N CYS A 113 O LEU A 178 SHEET 8 AA1 8 GLY A 79 SER A 81 -1 N SER A 81 O HIS A 110 SHEET 1 AA2 2 VAL A 186 PRO A 187 0 SHEET 2 AA2 2 GLU A 283 ILE A 284 -1 O ILE A 284 N VAL A 186 SHEET 1 AA3 6 PHE A 232 PRO A 234 0 SHEET 2 AA3 6 LEU A 219 GLU A 222 -1 N VAL A 221 O ILE A 233 SHEET 3 AA3 6 HIS A 264 VAL A 266 -1 O ARG A 265 N GLU A 220 SHEET 4 AA3 6 ILE A 199 ASP A 204 -1 N HIS A 202 O HIS A 264 SHEET 5 AA3 6 ALA B 280 ILE B 284 -1 O GLU B 283 N PRO A 201 SHEET 6 AA3 6 VAL B 186 PRO B 187 -1 N VAL B 186 O ILE B 284 SHEET 1 AA4 8 LEU B 5 ASP B 7 0 SHEET 2 AA4 8 PHE B 34 THR B 38 1 O ARG B 36 N LEU B 6 SHEET 3 AA4 8 LEU B 243 ILE B 247 -1 O VAL B 245 N VAL B 35 SHEET 4 AA4 8 ILE B 208 THR B 213 -1 N LEU B 211 O ILE B 244 SHEET 5 AA4 8 ARG B 287 LEU B 293 -1 O TYR B 292 N LEU B 210 SHEET 6 AA4 8 GLU B 177 TYR B 183 -1 N GLU B 177 O LEU B 293 SHEET 7 AA4 8 GLU B 109 CYS B 113 -1 N PHE B 111 O LEU B 180 SHEET 8 AA4 8 GLY B 79 SER B 81 -1 N SER B 81 O HIS B 110 SHEET 1 AA5 2 THR B 105 ASP B 106 0 SHEET 2 AA5 2 VAL B 196 ALA B 197 1 O ALA B 197 N THR B 105 SHEET 1 AA6 4 ILE B 199 HIS B 202 0 SHEET 2 AA6 4 HIS B 264 VAL B 266 -1 O HIS B 264 N HIS B 202 SHEET 3 AA6 4 LEU B 219 GLU B 222 -1 N GLU B 220 O ARG B 265 SHEET 4 AA6 4 PHE B 232 PRO B 234 -1 O ILE B 233 N VAL B 221 LINK NE2 HIS A 202 NI NI A 401 1555 1555 1.98 LINK OD1 ASP A 204 NI NI A 401 1555 1555 1.97 LINK NE2 HIS A 264 NI NI A 401 1555 1555 1.98 LINK NI NI A 401 O2' OGA A 402 1555 1555 1.98 LINK NI NI A 401 O1 OGA A 402 1555 1555 1.98 LINK NI NI A 401 O HOH A 509 1555 1555 1.99 LINK NE2 HIS B 202 NI NI B 401 1555 1555 1.98 LINK OD1 ASP B 204 NI NI B 401 1555 1555 1.99 LINK NE2 HIS B 264 NI NI B 401 1555 1555 1.97 LINK NI NI B 401 O2 OGA B 402 1555 1555 1.97 LINK NI NI B 401 O2' OGA B 402 1555 1555 1.98 LINK NI NI B 401 O HOH B 509 1555 1555 2.00 CRYST1 48.164 92.003 137.851 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020762 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007254 0.00000 CONECT 1597 5015 CONECT 1615 5015 CONECT 2075 5015 CONECT 4028 5026 CONECT 4046 5026 CONECT 4506 5026 CONECT 5015 1597 1615 2075 5020 CONECT 5015 5022 5045 CONECT 5016 5017 5020 5021 CONECT 5017 5016 5022 5024 CONECT 5018 5019 5024 CONECT 5019 5018 5023 5025 CONECT 5020 5015 5016 CONECT 5021 5016 CONECT 5022 5015 5017 CONECT 5023 5019 CONECT 5024 5017 5018 CONECT 5025 5019 CONECT 5026 4028 4046 4506 5032 CONECT 5026 5033 5161 CONECT 5027 5028 5031 5032 CONECT 5028 5027 5033 5035 CONECT 5029 5030 5035 CONECT 5030 5029 5034 5036 CONECT 5031 5027 CONECT 5032 5026 5027 CONECT 5033 5026 5028 CONECT 5034 5030 CONECT 5035 5028 5029 CONECT 5036 5030 CONECT 5045 5015 CONECT 5161 5026 MASTER 480 0 4 24 30 0 0 6 5237 2 32 52 END