HEADER PROTEIN FIBRIL 03-DEC-24 9KTZ TITLE CRYO-EM STRUCTURE OF THE TIA-1 PRION-LIKE DOMAIN AMYLOID FIBRIL, G355R COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOTOXIC GRANULE ASSOCIATED RNA BINDING PROTEIN TIA1; COMPND 3 CHAIN: B, E, A, D, C, F; COMPND 4 SYNONYM: NUCLEOLYSIN TIA-1 ISOFORM P40,RNA-BINDING PROTEIN TIA-1,T- COMPND 5 CELL-RESTRICTED INTRACELLULAR ANTIGEN-1,TIA-1,P40-TIA-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TIA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMYLOID FIBRIL, PRION-LIKE DOMAIN, RNA-BINDING PROTEIN, PROTEIN KEYWDS 2 FIBRIL EXPDTA ELECTRON MICROSCOPY AUTHOR D.INAOKA,T.MIYATA,F.MAKINO,Y.OHTANI,M.EKARI,R.KOBAYASHI,K.IMAMURA, AUTHOR 2 E.SAKAMOTO,S.T.KODAMA,N.YOSHIDA,T.KATO,K.NAMBA,H.TOCHIO,N.SEKIYAMA REVDAT 1 03-DEC-25 9KTZ 0 JRNL AUTH D.INAOKA,T.MIYATA,F.MAKINO,Y.OHTANI,M.EKARI,R.KOBAYASHI, JRNL AUTH 2 K.IMAMURA,E.SAKAMOTO,S.T.KODAMA,N.YOSHIDA,T.KATO,K.NAMBA, JRNL AUTH 3 H.TOCHIO,N.SEKIYAMA JRNL TITL TIA-1 PLD AMYLOID FIBRIL FORMATION IS SUPPRESSED BY THE JRNL TITL 2 ALS-ASSOCIATED MUTATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, SERIALEM, CTFFIND, COOT, REMARK 3 PHENIX, RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.100 REMARK 3 NUMBER OF PARTICLES : 45382 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9KTZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300053817. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : AMYLOID FIBRIL FORMED BY TIA-1 REMARK 245 PRION-LIKE DOMAIN REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 2.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 4650 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : JEOL CRYO ARM 300 REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 50000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, A, D, C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -28 REMARK 465 GLY B -27 REMARK 465 SER B -26 REMARK 465 SER B -25 REMARK 465 HIS B -24 REMARK 465 HIS B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 SER B -12 REMARK 465 GLU B -11 REMARK 465 ASN B -10 REMARK 465 LEU B -9 REMARK 465 TYR B -8 REMARK 465 PHE B -7 REMARK 465 GLN B -6 REMARK 465 GLY B -5 REMARK 465 GLY B -4 REMARK 465 GLN B -3 REMARK 465 TYR B -2 REMARK 465 MET B -1 REMARK 465 PRO B 0 REMARK 465 ASN B 1 REMARK 465 GLY B 2 REMARK 465 TRP B 3 REMARK 465 GLN B 4 REMARK 465 VAL B 5 REMARK 465 PRO B 6 REMARK 465 ALA B 7 REMARK 465 TYR B 8 REMARK 465 GLY B 9 REMARK 465 SER B 26 REMARK 465 ALA B 27 REMARK 465 PRO B 28 REMARK 465 TRP B 29 REMARK 465 MET B 30 REMARK 465 ARG B 31 REMARK 465 PRO B 32 REMARK 465 ASN B 33 REMARK 465 TYR B 34 REMARK 465 GLY B 35 REMARK 465 VAL B 36 REMARK 465 GLN B 37 REMARK 465 PRO B 38 REMARK 465 PRO B 39 REMARK 465 GLN B 40 REMARK 465 GLY B 41 REMARK 465 GLN B 42 REMARK 465 ASN B 43 REMARK 465 GLY B 44 REMARK 465 SER B 45 REMARK 465 MET B 46 REMARK 465 LEU B 47 REMARK 465 PRO B 48 REMARK 465 ASN B 49 REMARK 465 GLN B 50 REMARK 465 PRO B 51 REMARK 465 SER B 52 REMARK 465 GLY B 53 REMARK 465 TYR B 54 REMARK 465 ARG B 55 REMARK 465 VAL B 56 REMARK 465 ALA B 57 REMARK 465 GLY B 58 REMARK 465 TYR B 59 REMARK 465 GLU B 60 REMARK 465 THR B 61 REMARK 465 GLN B 62 REMARK 465 MET E -28 REMARK 465 GLY E -27 REMARK 465 SER E -26 REMARK 465 SER E -25 REMARK 465 HIS E -24 REMARK 465 HIS E -23 REMARK 465 HIS E -22 REMARK 465 HIS E -21 REMARK 465 HIS E -20 REMARK 465 HIS E -19 REMARK 465 HIS E -18 REMARK 465 HIS E -17 REMARK 465 HIS E -16 REMARK 465 HIS E -15 REMARK 465 HIS E -14 REMARK 465 HIS E -13 REMARK 465 SER E -12 REMARK 465 GLU E -11 REMARK 465 ASN E -10 REMARK 465 LEU E -9 REMARK 465 TYR E -8 REMARK 465 PHE E -7 REMARK 465 GLN E -6 REMARK 465 GLY E -5 REMARK 465 GLY E -4 REMARK 465 GLN E -3 REMARK 465 TYR E -2 REMARK 465 MET E -1 REMARK 465 PRO E 0 REMARK 465 ASN E 1 REMARK 465 GLY E 2 REMARK 465 TRP E 3 REMARK 465 GLN E 4 REMARK 465 VAL E 5 REMARK 465 PRO E 6 REMARK 465 ALA E 7 REMARK 465 TYR E 8 REMARK 465 GLY E 9 REMARK 465 SER E 26 REMARK 465 ALA E 27 REMARK 465 PRO E 28 REMARK 465 TRP E 29 REMARK 465 MET E 30 REMARK 465 ARG E 31 REMARK 465 PRO E 32 REMARK 465 ASN E 33 REMARK 465 TYR E 34 REMARK 465 GLY E 35 REMARK 465 VAL E 36 REMARK 465 GLN E 37 REMARK 465 PRO E 38 REMARK 465 PRO E 39 REMARK 465 GLN E 40 REMARK 465 GLY E 41 REMARK 465 GLN E 42 REMARK 465 ASN E 43 REMARK 465 GLY E 44 REMARK 465 SER E 45 REMARK 465 MET E 46 REMARK 465 LEU E 47 REMARK 465 PRO E 48 REMARK 465 ASN E 49 REMARK 465 GLN E 50 REMARK 465 PRO E 51 REMARK 465 SER E 52 REMARK 465 GLY E 53 REMARK 465 TYR E 54 REMARK 465 ARG E 55 REMARK 465 VAL E 56 REMARK 465 ALA E 57 REMARK 465 GLY E 58 REMARK 465 TYR E 59 REMARK 465 GLU E 60 REMARK 465 THR E 61 REMARK 465 GLN E 62 REMARK 465 MET A -28 REMARK 465 GLY A -27 REMARK 465 SER A -26 REMARK 465 SER A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 GLU A -11 REMARK 465 ASN A -10 REMARK 465 LEU A -9 REMARK 465 TYR A -8 REMARK 465 PHE A -7 REMARK 465 GLN A -6 REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 GLN A -3 REMARK 465 TYR A -2 REMARK 465 MET A -1 REMARK 465 PRO A 0 REMARK 465 ASN A 1 REMARK 465 GLY A 2 REMARK 465 TRP A 3 REMARK 465 GLN A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 TYR A 8 REMARK 465 GLY A 9 REMARK 465 SER A 26 REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 TRP A 29 REMARK 465 MET A 30 REMARK 465 ARG A 31 REMARK 465 PRO A 32 REMARK 465 ASN A 33 REMARK 465 TYR A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 GLN A 37 REMARK 465 PRO A 38 REMARK 465 PRO A 39 REMARK 465 GLN A 40 REMARK 465 GLY A 41 REMARK 465 GLN A 42 REMARK 465 ASN A 43 REMARK 465 GLY A 44 REMARK 465 SER A 45 REMARK 465 MET A 46 REMARK 465 LEU A 47 REMARK 465 PRO A 48 REMARK 465 ASN A 49 REMARK 465 GLN A 50 REMARK 465 PRO A 51 REMARK 465 SER A 52 REMARK 465 GLY A 53 REMARK 465 TYR A 54 REMARK 465 ARG A 55 REMARK 465 VAL A 56 REMARK 465 ALA A 57 REMARK 465 GLY A 58 REMARK 465 TYR A 59 REMARK 465 GLU A 60 REMARK 465 THR A 61 REMARK 465 GLN A 62 REMARK 465 MET D -28 REMARK 465 GLY D -27 REMARK 465 SER D -26 REMARK 465 SER D -25 REMARK 465 HIS D -24 REMARK 465 HIS D -23 REMARK 465 HIS D -22 REMARK 465 HIS D -21 REMARK 465 HIS D -20 REMARK 465 HIS D -19 REMARK 465 HIS D -18 REMARK 465 HIS D -17 REMARK 465 HIS D -16 REMARK 465 HIS D -15 REMARK 465 HIS D -14 REMARK 465 HIS D -13 REMARK 465 SER D -12 REMARK 465 GLU D -11 REMARK 465 ASN D -10 REMARK 465 LEU D -9 REMARK 465 TYR D -8 REMARK 465 PHE D -7 REMARK 465 GLN D -6 REMARK 465 GLY D -5 REMARK 465 GLY D -4 REMARK 465 GLN D -3 REMARK 465 TYR D -2 REMARK 465 MET D -1 REMARK 465 PRO D 0 REMARK 465 ASN D 1 REMARK 465 GLY D 2 REMARK 465 TRP D 3 REMARK 465 GLN D 4 REMARK 465 VAL D 5 REMARK 465 PRO D 6 REMARK 465 ALA D 7 REMARK 465 TYR D 8 REMARK 465 GLY D 9 REMARK 465 SER D 26 REMARK 465 ALA D 27 REMARK 465 PRO D 28 REMARK 465 TRP D 29 REMARK 465 MET D 30 REMARK 465 ARG D 31 REMARK 465 PRO D 32 REMARK 465 ASN D 33 REMARK 465 TYR D 34 REMARK 465 GLY D 35 REMARK 465 VAL D 36 REMARK 465 GLN D 37 REMARK 465 PRO D 38 REMARK 465 PRO D 39 REMARK 465 GLN D 40 REMARK 465 GLY D 41 REMARK 465 GLN D 42 REMARK 465 ASN D 43 REMARK 465 GLY D 44 REMARK 465 SER D 45 REMARK 465 MET D 46 REMARK 465 LEU D 47 REMARK 465 PRO D 48 REMARK 465 ASN D 49 REMARK 465 GLN D 50 REMARK 465 PRO D 51 REMARK 465 SER D 52 REMARK 465 GLY D 53 REMARK 465 TYR D 54 REMARK 465 ARG D 55 REMARK 465 VAL D 56 REMARK 465 ALA D 57 REMARK 465 GLY D 58 REMARK 465 TYR D 59 REMARK 465 GLU D 60 REMARK 465 THR D 61 REMARK 465 GLN D 62 REMARK 465 MET C -28 REMARK 465 GLY C -27 REMARK 465 SER C -26 REMARK 465 SER C -25 REMARK 465 HIS C -24 REMARK 465 HIS C -23 REMARK 465 HIS C -22 REMARK 465 HIS C -21 REMARK 465 HIS C -20 REMARK 465 HIS C -19 REMARK 465 HIS C -18 REMARK 465 HIS C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 SER C -12 REMARK 465 GLU C -11 REMARK 465 ASN C -10 REMARK 465 LEU C -9 REMARK 465 TYR C -8 REMARK 465 PHE C -7 REMARK 465 GLN C -6 REMARK 465 GLY C -5 REMARK 465 GLY C -4 REMARK 465 GLN C -3 REMARK 465 TYR C -2 REMARK 465 MET C -1 REMARK 465 PRO C 0 REMARK 465 ASN C 1 REMARK 465 GLY C 2 REMARK 465 TRP C 3 REMARK 465 GLN C 4 REMARK 465 VAL C 5 REMARK 465 PRO C 6 REMARK 465 ALA C 7 REMARK 465 TYR C 8 REMARK 465 GLY C 9 REMARK 465 SER C 26 REMARK 465 ALA C 27 REMARK 465 PRO C 28 REMARK 465 TRP C 29 REMARK 465 MET C 30 REMARK 465 ARG C 31 REMARK 465 PRO C 32 REMARK 465 ASN C 33 REMARK 465 TYR C 34 REMARK 465 GLY C 35 REMARK 465 VAL C 36 REMARK 465 GLN C 37 REMARK 465 PRO C 38 REMARK 465 PRO C 39 REMARK 465 GLN C 40 REMARK 465 GLY C 41 REMARK 465 GLN C 42 REMARK 465 ASN C 43 REMARK 465 GLY C 44 REMARK 465 SER C 45 REMARK 465 MET C 46 REMARK 465 LEU C 47 REMARK 465 PRO C 48 REMARK 465 ASN C 49 REMARK 465 GLN C 50 REMARK 465 PRO C 51 REMARK 465 SER C 52 REMARK 465 GLY C 53 REMARK 465 TYR C 54 REMARK 465 ARG C 55 REMARK 465 VAL C 56 REMARK 465 ALA C 57 REMARK 465 GLY C 58 REMARK 465 TYR C 59 REMARK 465 GLU C 60 REMARK 465 THR C 61 REMARK 465 GLN C 62 REMARK 465 MET F -28 REMARK 465 GLY F -27 REMARK 465 SER F -26 REMARK 465 SER F -25 REMARK 465 HIS F -24 REMARK 465 HIS F -23 REMARK 465 HIS F -22 REMARK 465 HIS F -21 REMARK 465 HIS F -20 REMARK 465 HIS F -19 REMARK 465 HIS F -18 REMARK 465 HIS F -17 REMARK 465 HIS F -16 REMARK 465 HIS F -15 REMARK 465 HIS F -14 REMARK 465 HIS F -13 REMARK 465 SER F -12 REMARK 465 GLU F -11 REMARK 465 ASN F -10 REMARK 465 LEU F -9 REMARK 465 TYR F -8 REMARK 465 PHE F -7 REMARK 465 GLN F -6 REMARK 465 GLY F -5 REMARK 465 GLY F -4 REMARK 465 GLN F -3 REMARK 465 TYR F -2 REMARK 465 MET F -1 REMARK 465 PRO F 0 REMARK 465 ASN F 1 REMARK 465 GLY F 2 REMARK 465 TRP F 3 REMARK 465 GLN F 4 REMARK 465 VAL F 5 REMARK 465 PRO F 6 REMARK 465 ALA F 7 REMARK 465 TYR F 8 REMARK 465 GLY F 9 REMARK 465 SER F 26 REMARK 465 ALA F 27 REMARK 465 PRO F 28 REMARK 465 TRP F 29 REMARK 465 MET F 30 REMARK 465 ARG F 31 REMARK 465 PRO F 32 REMARK 465 ASN F 33 REMARK 465 TYR F 34 REMARK 465 GLY F 35 REMARK 465 VAL F 36 REMARK 465 GLN F 37 REMARK 465 PRO F 38 REMARK 465 PRO F 39 REMARK 465 GLN F 40 REMARK 465 GLY F 41 REMARK 465 GLN F 42 REMARK 465 ASN F 43 REMARK 465 GLY F 44 REMARK 465 SER F 45 REMARK 465 MET F 46 REMARK 465 LEU F 47 REMARK 465 PRO F 48 REMARK 465 ASN F 49 REMARK 465 GLN F 50 REMARK 465 PRO F 51 REMARK 465 SER F 52 REMARK 465 GLY F 53 REMARK 465 TYR F 54 REMARK 465 ARG F 55 REMARK 465 VAL F 56 REMARK 465 ALA F 57 REMARK 465 GLY F 58 REMARK 465 TYR F 59 REMARK 465 GLU F 60 REMARK 465 THR F 61 REMARK 465 GLN F 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 23 NE2 GLN E 13 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 20 -4.49 69.56 REMARK 500 PHE E 20 -4.45 69.55 REMARK 500 PHE A 20 -4.51 69.53 REMARK 500 PHE D 20 -4.48 69.55 REMARK 500 PHE C 20 -4.52 69.54 REMARK 500 PHE F 20 -4.49 69.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-62571 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF THE TIA-1 PRION-LIKE DOMAIN AMYLOID FIBRIL, REMARK 900 G355R DBREF 9KTZ B -4 62 UNP P31483 TIA1_HUMAN 320 386 DBREF 9KTZ E -4 62 UNP P31483 TIA1_HUMAN 320 386 DBREF 9KTZ A -4 62 UNP P31483 TIA1_HUMAN 320 386 DBREF 9KTZ D -4 62 UNP P31483 TIA1_HUMAN 320 386 DBREF 9KTZ C -4 62 UNP P31483 TIA1_HUMAN 320 386 DBREF 9KTZ F -4 62 UNP P31483 TIA1_HUMAN 320 386 SEQADV 9KTZ MET B -28 UNP P31483 INITIATING METHIONINE SEQADV 9KTZ GLY B -27 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER B -26 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER B -25 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -24 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -23 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -22 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -21 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -20 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -19 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -18 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -17 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -16 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -15 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -14 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS B -13 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER B -12 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLU B -11 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ASN B -10 UNP P31483 EXPRESSION TAG SEQADV 9KTZ LEU B -9 UNP P31483 EXPRESSION TAG SEQADV 9KTZ TYR B -8 UNP P31483 EXPRESSION TAG SEQADV 9KTZ PHE B -7 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLN B -6 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLY B -5 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ARG B 31 UNP P31483 GLY 355 ENGINEERED MUTATION SEQADV 9KTZ MET E -28 UNP P31483 INITIATING METHIONINE SEQADV 9KTZ GLY E -27 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER E -26 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER E -25 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -24 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -23 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -22 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -21 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -20 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -19 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -18 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -17 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -16 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -15 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -14 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS E -13 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER E -12 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLU E -11 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ASN E -10 UNP P31483 EXPRESSION TAG SEQADV 9KTZ LEU E -9 UNP P31483 EXPRESSION TAG SEQADV 9KTZ TYR E -8 UNP P31483 EXPRESSION TAG SEQADV 9KTZ PHE E -7 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLN E -6 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLY E -5 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ARG E 31 UNP P31483 GLY 355 ENGINEERED MUTATION SEQADV 9KTZ MET A -28 UNP P31483 INITIATING METHIONINE SEQADV 9KTZ GLY A -27 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER A -26 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER A -25 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -24 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -23 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -22 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -21 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -20 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -19 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -18 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -17 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -16 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -15 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -14 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS A -13 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER A -12 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLU A -11 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ASN A -10 UNP P31483 EXPRESSION TAG SEQADV 9KTZ LEU A -9 UNP P31483 EXPRESSION TAG SEQADV 9KTZ TYR A -8 UNP P31483 EXPRESSION TAG SEQADV 9KTZ PHE A -7 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLN A -6 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLY A -5 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ARG A 31 UNP P31483 GLY 355 ENGINEERED MUTATION SEQADV 9KTZ MET D -28 UNP P31483 INITIATING METHIONINE SEQADV 9KTZ GLY D -27 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER D -26 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER D -25 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -24 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -23 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -22 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -21 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -20 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -19 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -18 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -17 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -16 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -15 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -14 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS D -13 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER D -12 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLU D -11 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ASN D -10 UNP P31483 EXPRESSION TAG SEQADV 9KTZ LEU D -9 UNP P31483 EXPRESSION TAG SEQADV 9KTZ TYR D -8 UNP P31483 EXPRESSION TAG SEQADV 9KTZ PHE D -7 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLN D -6 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLY D -5 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ARG D 31 UNP P31483 GLY 355 ENGINEERED MUTATION SEQADV 9KTZ MET C -28 UNP P31483 INITIATING METHIONINE SEQADV 9KTZ GLY C -27 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER C -26 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER C -25 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -24 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -23 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -22 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -21 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -20 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -19 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -18 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -17 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -16 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -15 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -14 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS C -13 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER C -12 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLU C -11 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ASN C -10 UNP P31483 EXPRESSION TAG SEQADV 9KTZ LEU C -9 UNP P31483 EXPRESSION TAG SEQADV 9KTZ TYR C -8 UNP P31483 EXPRESSION TAG SEQADV 9KTZ PHE C -7 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLN C -6 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLY C -5 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ARG C 31 UNP P31483 GLY 355 ENGINEERED MUTATION SEQADV 9KTZ MET F -28 UNP P31483 INITIATING METHIONINE SEQADV 9KTZ GLY F -27 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER F -26 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER F -25 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -24 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -23 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -22 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -21 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -20 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -19 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -18 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -17 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -16 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -15 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -14 UNP P31483 EXPRESSION TAG SEQADV 9KTZ HIS F -13 UNP P31483 EXPRESSION TAG SEQADV 9KTZ SER F -12 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLU F -11 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ASN F -10 UNP P31483 EXPRESSION TAG SEQADV 9KTZ LEU F -9 UNP P31483 EXPRESSION TAG SEQADV 9KTZ TYR F -8 UNP P31483 EXPRESSION TAG SEQADV 9KTZ PHE F -7 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLN F -6 UNP P31483 EXPRESSION TAG SEQADV 9KTZ GLY F -5 UNP P31483 EXPRESSION TAG SEQADV 9KTZ ARG F 31 UNP P31483 GLY 355 ENGINEERED MUTATION SEQRES 1 B 91 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 B 91 HIS HIS HIS SER GLU ASN LEU TYR PHE GLN GLY GLY GLN SEQRES 3 B 91 TYR MET PRO ASN GLY TRP GLN VAL PRO ALA TYR GLY MET SEQRES 4 B 91 TYR GLY GLN ALA TRP ASN GLN GLN GLY PHE ASN GLN THR SEQRES 5 B 91 GLN SER SER ALA PRO TRP MET ARG PRO ASN TYR GLY VAL SEQRES 6 B 91 GLN PRO PRO GLN GLY GLN ASN GLY SER MET LEU PRO ASN SEQRES 7 B 91 GLN PRO SER GLY TYR ARG VAL ALA GLY TYR GLU THR GLN SEQRES 1 E 91 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 E 91 HIS HIS HIS SER GLU ASN LEU TYR PHE GLN GLY GLY GLN SEQRES 3 E 91 TYR MET PRO ASN GLY TRP GLN VAL PRO ALA TYR GLY MET SEQRES 4 E 91 TYR GLY GLN ALA TRP ASN GLN GLN GLY PHE ASN GLN THR SEQRES 5 E 91 GLN SER SER ALA PRO TRP MET ARG PRO ASN TYR GLY VAL SEQRES 6 E 91 GLN PRO PRO GLN GLY GLN ASN GLY SER MET LEU PRO ASN SEQRES 7 E 91 GLN PRO SER GLY TYR ARG VAL ALA GLY TYR GLU THR GLN SEQRES 1 A 91 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 A 91 HIS HIS HIS SER GLU ASN LEU TYR PHE GLN GLY GLY GLN SEQRES 3 A 91 TYR MET PRO ASN GLY TRP GLN VAL PRO ALA TYR GLY MET SEQRES 4 A 91 TYR GLY GLN ALA TRP ASN GLN GLN GLY PHE ASN GLN THR SEQRES 5 A 91 GLN SER SER ALA PRO TRP MET ARG PRO ASN TYR GLY VAL SEQRES 6 A 91 GLN PRO PRO GLN GLY GLN ASN GLY SER MET LEU PRO ASN SEQRES 7 A 91 GLN PRO SER GLY TYR ARG VAL ALA GLY TYR GLU THR GLN SEQRES 1 D 91 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 D 91 HIS HIS HIS SER GLU ASN LEU TYR PHE GLN GLY GLY GLN SEQRES 3 D 91 TYR MET PRO ASN GLY TRP GLN VAL PRO ALA TYR GLY MET SEQRES 4 D 91 TYR GLY GLN ALA TRP ASN GLN GLN GLY PHE ASN GLN THR SEQRES 5 D 91 GLN SER SER ALA PRO TRP MET ARG PRO ASN TYR GLY VAL SEQRES 6 D 91 GLN PRO PRO GLN GLY GLN ASN GLY SER MET LEU PRO ASN SEQRES 7 D 91 GLN PRO SER GLY TYR ARG VAL ALA GLY TYR GLU THR GLN SEQRES 1 C 91 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 C 91 HIS HIS HIS SER GLU ASN LEU TYR PHE GLN GLY GLY GLN SEQRES 3 C 91 TYR MET PRO ASN GLY TRP GLN VAL PRO ALA TYR GLY MET SEQRES 4 C 91 TYR GLY GLN ALA TRP ASN GLN GLN GLY PHE ASN GLN THR SEQRES 5 C 91 GLN SER SER ALA PRO TRP MET ARG PRO ASN TYR GLY VAL SEQRES 6 C 91 GLN PRO PRO GLN GLY GLN ASN GLY SER MET LEU PRO ASN SEQRES 7 C 91 GLN PRO SER GLY TYR ARG VAL ALA GLY TYR GLU THR GLN SEQRES 1 F 91 MET GLY SER SER HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 2 F 91 HIS HIS HIS SER GLU ASN LEU TYR PHE GLN GLY GLY GLN SEQRES 3 F 91 TYR MET PRO ASN GLY TRP GLN VAL PRO ALA TYR GLY MET SEQRES 4 F 91 TYR GLY GLN ALA TRP ASN GLN GLN GLY PHE ASN GLN THR SEQRES 5 F 91 GLN SER SER ALA PRO TRP MET ARG PRO ASN TYR GLY VAL SEQRES 6 F 91 GLN PRO PRO GLN GLY GLN ASN GLY SER MET LEU PRO ASN SEQRES 7 F 91 GLN PRO SER GLY TYR ARG VAL ALA GLY TYR GLU THR GLN CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 133 SER B 25 TER 266 SER E 25 TER 399 SER A 25 TER 532 SER D 25 TER 665 SER C 25 TER 798 SER F 25 MASTER 590 0 0 0 0 0 0 6 792 6 0 42 END