data_9KU1 # _entry.id 9KU1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.413 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9KU1 pdb_00009ku1 10.2210/pdb9ku1/pdb WWPDB D_1300052506 ? ? EMDB EMD-62572 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-06-10 ? 2 'EM metadata' 1 0 2026-06-10 ? 3 'Additional map' 1 0 2026-06-10 1 4 FSC 1 0 2026-06-10 ? 5 'Half map' 1 0 2026-06-10 1 6 'Half map' 1 0 2026-06-10 2 7 Image 1 0 2026-06-10 ? 8 Mask 1 0 2026-06-10 1 9 'Primary map' 1 0 2026-06-10 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Additional map' repository 'Initial release' ? ? 4 4 FSC repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 'Half map' repository 'Initial release' ? ? 7 7 Image repository 'Initial release' ? ? 8 8 Mask repository 'Initial release' ? ? 9 9 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9KU1 _pdbx_database_status.recvd_initial_deposition_date 2024-12-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of AzoPep peptide nanofibers' _pdbx_database_related.db_id EMD-62572 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email park@yokohama-cu.ac.jp _pdbx_contact_author.name_first Sam-Yong _pdbx_contact_author.name_last Park _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-6164-8896 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kawabata, H.' 1 0000-0001-7495-4219 'Umezawa, H.' 2 0009-0003-5055-0297 'Park, S.Y.' 3 0000-0001-6164-8896 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structure of AzoPep peptide nanofibers' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kawabata, H.' 1 0000-0001-7495-4219 primary 'Umezawa, H.' 2 0009-0003-5055-0297 primary 'Park, S.Y.' 3 0000-0001-6164-8896 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn AzoPep 1084.302 7 ? ? ? ? 2 water nat water 18.015 36 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)RMDAR(OZW)R(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XRMDARFRX _entity_poly.pdbx_strand_id A,B,C,D,E,F,G _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 ARG n 1 3 MET n 1 4 ASP n 1 5 ALA n 1 6 ARG n 1 7 OZW n 1 8 ARG n 1 9 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 HOH non-polymer . WATER ? 'H2 O' 18.015 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 OZW 'L-peptide linking' n 'phenylhydrazinyl phenylalanine' ? 'C15 H17 N3 O2' 271.314 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 ARG 2 1 1 ARG ARG A . n A 1 3 MET 3 2 2 MET MET A . n A 1 4 ASP 4 3 3 ASP ASP A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 ARG 6 5 5 ARG ARG A . n A 1 7 OZW 7 6 6 OZW AZP A . n A 1 8 ARG 8 7 7 ARG ARG A . n A 1 9 NH2 9 8 8 NH2 NH2 A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 ARG 2 1 1 ARG ARG B . n B 1 3 MET 3 2 2 MET MET B . n B 1 4 ASP 4 3 3 ASP ASP B . n B 1 5 ALA 5 4 4 ALA ALA B . n B 1 6 ARG 6 5 5 ARG ARG B . n B 1 7 OZW 7 6 6 OZW AZP B . n B 1 8 ARG 8 7 7 ARG ARG B . n B 1 9 NH2 9 8 8 NH2 NH2 B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 ARG 2 1 1 ARG ARG C . n C 1 3 MET 3 2 2 MET MET C . n C 1 4 ASP 4 3 3 ASP ASP C . n C 1 5 ALA 5 4 4 ALA ALA C . n C 1 6 ARG 6 5 5 ARG ARG C . n C 1 7 OZW 7 6 6 OZW AZP C . n C 1 8 ARG 8 7 7 ARG ARG C . n C 1 9 NH2 9 8 8 NH2 NH2 C . n D 1 1 ACE 1 0 0 ACE ACE D . n D 1 2 ARG 2 1 1 ARG ARG D . n D 1 3 MET 3 2 2 MET MET D . n D 1 4 ASP 4 3 3 ASP ASP D . n D 1 5 ALA 5 4 4 ALA ALA D . n D 1 6 ARG 6 5 5 ARG ARG D . n D 1 7 OZW 7 6 6 OZW AZP D . n D 1 8 ARG 8 7 7 ARG ARG D . n D 1 9 NH2 9 8 8 NH2 NH2 D . n E 1 1 ACE 1 0 0 ACE ACE E . n E 1 2 ARG 2 1 1 ARG ARG E . n E 1 3 MET 3 2 2 MET MET E . n E 1 4 ASP 4 3 3 ASP ASP E . n E 1 5 ALA 5 4 4 ALA ALA E . n E 1 6 ARG 6 5 5 ARG ARG E . n E 1 7 OZW 7 6 6 OZW AZP E . n E 1 8 ARG 8 7 7 ARG ARG E . n E 1 9 NH2 9 8 8 NH2 NH2 E . n F 1 1 ACE 1 0 0 ACE ACE F . n F 1 2 ARG 2 1 1 ARG ARG F . n F 1 3 MET 3 2 2 MET MET F . n F 1 4 ASP 4 3 3 ASP ASP F . n F 1 5 ALA 5 4 4 ALA ALA F . n F 1 6 ARG 6 5 5 ARG ARG F . n F 1 7 OZW 7 6 6 OZW AZP F . n F 1 8 ARG 8 7 7 ARG ARG F . n F 1 9 NH2 9 8 8 NH2 NH2 F . n G 1 1 ACE 1 0 0 ACE ACE G . n G 1 2 ARG 2 1 1 ARG ARG G . n G 1 3 MET 3 2 2 MET MET G . n G 1 4 ASP 4 3 3 ASP ASP G . n G 1 5 ALA 5 4 4 ALA ALA G . n G 1 6 ARG 6 5 5 ARG ARG G . n G 1 7 OZW 7 6 6 OZW AZP G . n G 1 8 ARG 8 7 7 ARG ARG G . n G 1 9 NH2 9 8 8 NH2 NH2 G . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 ACE ? ? ACE ? ? 'SUBJECT OF INVESTIGATION' ? 2 OZW ? ? OZW ? ? 'SUBJECT OF INVESTIGATION' ? 3 NH2 ? ? NH2 ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 HOH 1 101 30 HOH HOH A . H 2 HOH 2 102 12 HOH HOH A . H 2 HOH 3 103 1 HOH HOH A . H 2 HOH 4 104 32 HOH HOH A . I 2 HOH 1 101 20 HOH HOH B . I 2 HOH 2 102 2 HOH HOH B . J 2 HOH 1 101 21 HOH HOH C . J 2 HOH 2 102 13 HOH HOH C . J 2 HOH 3 103 19 HOH HOH C . J 2 HOH 4 104 14 HOH HOH C . J 2 HOH 5 105 3 HOH HOH C . J 2 HOH 6 106 11 HOH HOH C . J 2 HOH 7 107 7 HOH HOH C . J 2 HOH 8 108 4 HOH HOH C . K 2 HOH 1 101 15 HOH HOH D . K 2 HOH 2 102 35 HOH HOH D . K 2 HOH 3 103 16 HOH HOH D . K 2 HOH 4 104 18 HOH HOH D . K 2 HOH 5 105 17 HOH HOH D . K 2 HOH 6 106 6 HOH HOH D . L 2 HOH 1 101 23 HOH HOH E . L 2 HOH 2 102 22 HOH HOH E . L 2 HOH 3 103 8 HOH HOH E . M 2 HOH 1 101 25 HOH HOH F . M 2 HOH 2 102 24 HOH HOH F . M 2 HOH 3 103 9 HOH HOH F . M 2 HOH 4 104 26 HOH HOH F . N 2 HOH 1 101 5 HOH HOH G . N 2 HOH 2 102 31 HOH HOH G . N 2 HOH 3 103 28 HOH HOH G . N 2 HOH 4 104 29 HOH HOH G . N 2 HOH 5 105 27 HOH HOH G . N 2 HOH 6 106 10 HOH HOH G . N 2 HOH 7 107 33 HOH HOH G . N 2 HOH 8 108 36 HOH HOH G . N 2 HOH 9 109 34 HOH HOH G . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9KU1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9KU1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9KU1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 54 generate ? 0.999549 -0.030015 0.000000 0.030015 0.999549 0.000000 0.000000 0.000000 1.000000 4.25253 -4.12674 -9.50640 55 generate ? -0.999747 0.022513 0.000000 -0.022513 -0.999747 0.000000 0.000000 0.000000 1.000000 275.99019 282.27506 -7.12980 56 generate ? 0.999887 -0.015009 0.000000 0.015009 0.999887 0.000000 0.000000 0.000000 1.000000 2.11078 -2.07933 -4.75320 57 generate ? -0.999972 0.007505 0.000000 -0.007505 -0.999972 0.000000 0.000000 0.000000 1.000000 278.11651 280.21163 -2.37660 59 generate ? -0.999972 -0.007505 0.000000 0.007505 -0.999972 0.000000 0.000000 0.000000 1.000000 280.21163 278.11651 2.37660 60 generate ? 0.999887 0.015009 0.000000 -0.015009 0.999887 0.000000 0.000000 0.000000 1.000000 -2.07933 2.11078 4.75320 62 generate ? 0.999549 0.030015 0.000000 -0.030015 0.999549 0.000000 0.000000 0.000000 1.000000 -4.12674 4.25253 9.50640 # _struct.entry_id 9KU1 _struct.title 'Cryo-electron microscopy structure of nanofibers formed by reverse azobenzene peptides.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9KU1 _struct_keywords.text 'de novo protein, nanofiber' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9KU1 _struct_ref.pdbx_db_accession 9KU1 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9KU1 A 1 ? 9 ? 9KU1 0 ? 8 ? 0 8 2 1 9KU1 B 1 ? 9 ? 9KU1 0 ? 8 ? 0 8 3 1 9KU1 C 1 ? 9 ? 9KU1 0 ? 8 ? 0 8 4 1 9KU1 D 1 ? 9 ? 9KU1 0 ? 8 ? 0 8 5 1 9KU1 E 1 ? 9 ? 9KU1 0 ? 8 ? 0 8 6 1 9KU1 F 1 ? 9 ? 9KU1 0 ? 8 ? 0 8 7 1 9KU1 G 1 ? 9 ? 9KU1 0 ? 8 ? 0 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 2 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 3 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 4 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 5 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 6 A,B,C,D,E,F,G,H,I,J,K,L,M,N 1 7 A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'point symmetry operation' ? ? 0.999549 -0.030015 0.000000 4.25253 0.030015 0.999549 0.000000 -4.12674 0.000000 0.000000 1.000000 -9.50640 2 'identity operation' 1_555 x,y,z 1.0 0.0 0.0 0.0 0.0 1.0 0.0 0.0 0.0 0.0 1.0 0.0 3 'point symmetry operation' ? ? -0.999747 0.022513 0.000000 275.99019 -0.022513 -0.999747 0.000000 282.27506 0.000000 0.000000 1.000000 -7.12980 4 'point symmetry operation' ? ? 0.999887 -0.015009 0.000000 2.11078 0.015009 0.999887 0.000000 -2.07933 0.000000 0.000000 1.000000 -4.75320 5 'point symmetry operation' ? ? -0.999972 0.007505 0.000000 278.11651 -0.007505 -0.999972 0.000000 280.21163 0.000000 0.000000 1.000000 -2.37660 6 'point symmetry operation' ? ? -0.999972 -0.007505 0.000000 280.21163 0.007505 -0.999972 0.000000 278.11651 0.000000 0.000000 1.000000 2.37660 7 'point symmetry operation' ? ? 0.999887 0.015009 0.000000 -2.07933 -0.015009 0.999887 0.000000 2.11078 0.000000 0.000000 1.000000 4.75320 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A ARG 2 N ? ? A ACE 0 A ARG 1 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A ARG 6 C ? ? ? 1_555 A OZW 7 N ? ? A ARG 5 A OZW 6 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale3 covale both ? A OZW 7 C ? ? ? 1_555 A ARG 8 N ? ? A OZW 6 A ARG 7 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale4 covale both ? A ARG 8 C ? ? ? 1_555 A NH2 9 N ? ? A ARG 7 A NH2 8 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale5 covale both ? B ACE 1 C ? ? ? 1_555 B ARG 2 N ? ? B ACE 0 B ARG 1 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale6 covale both ? B ARG 6 C ? ? ? 1_555 B OZW 7 N ? ? B ARG 5 B OZW 6 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale7 covale both ? B OZW 7 C ? ? ? 1_555 B ARG 8 N ? ? B OZW 6 B ARG 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale8 covale both ? B ARG 8 C ? ? ? 1_555 B NH2 9 N ? ? B ARG 7 B NH2 8 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale9 covale both ? C ACE 1 C ? ? ? 1_555 C ARG 2 N ? ? C ACE 0 C ARG 1 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale10 covale both ? C ARG 6 C ? ? ? 1_555 C OZW 7 N ? ? C ARG 5 C OZW 6 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale11 covale both ? C OZW 7 C ? ? ? 1_555 C ARG 8 N ? ? C OZW 6 C ARG 7 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale12 covale both ? C ARG 8 C ? ? ? 1_555 C NH2 9 N ? ? C ARG 7 C NH2 8 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale13 covale both ? D ACE 1 C ? ? ? 1_555 D ARG 2 N ? ? D ACE 0 D ARG 1 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale14 covale both ? D ARG 6 C ? ? ? 1_555 D OZW 7 N ? ? D ARG 5 D OZW 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale15 covale both ? D OZW 7 C ? ? ? 1_555 D ARG 8 N ? ? D OZW 6 D ARG 7 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale16 covale both ? D ARG 8 C ? ? ? 1_555 D NH2 9 N ? ? D ARG 7 D NH2 8 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale17 covale both ? E ACE 1 C ? ? ? 1_555 E ARG 2 N ? ? E ACE 0 E ARG 1 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale18 covale both ? E ARG 6 C ? ? ? 1_555 E OZW 7 N ? ? E ARG 5 E OZW 6 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale19 covale both ? E OZW 7 C ? ? ? 1_555 E ARG 8 N ? ? E OZW 6 E ARG 7 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale20 covale both ? E ARG 8 C ? ? ? 1_555 E NH2 9 N ? ? E ARG 7 E NH2 8 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale21 covale both ? F ACE 1 C ? ? ? 1_555 F ARG 2 N ? ? F ACE 0 F ARG 1 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale22 covale both ? F ARG 6 C ? ? ? 1_555 F OZW 7 N ? ? F ARG 5 F OZW 6 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale23 covale both ? F OZW 7 C ? ? ? 1_555 F ARG 8 N ? ? F OZW 6 F ARG 7 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale24 covale both ? F ARG 8 C ? ? ? 1_555 F NH2 9 N ? ? F ARG 7 F NH2 8 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale25 covale both ? G ACE 1 C ? ? ? 1_555 G ARG 2 N ? ? G ACE 0 G ARG 1 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale26 covale both ? G ARG 6 C ? ? ? 1_555 G OZW 7 N ? ? G ARG 5 G OZW 6 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale27 covale both ? G OZW 7 C ? ? ? 1_555 G ARG 8 N ? ? G OZW 6 G ARG 7 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale28 covale both ? G ARG 8 C ? ? ? 1_555 G NH2 9 N ? ? G ARG 7 G NH2 8 1_555 ? ? ? ? ? ? ? 1.348 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 OZW A 7 ? . . . . OZW A 6 ? 1_555 . . . . . . . ? 1 OZW None 'Non-standard residue' 2 OZW B 7 ? . . . . OZW B 6 ? 1_555 . . . . . . . ? 1 OZW None 'Non-standard residue' 3 OZW C 7 ? . . . . OZW C 6 ? 1_555 . . . . . . . ? 1 OZW None 'Non-standard residue' 4 OZW D 7 ? . . . . OZW D 6 ? 1_555 . . . . . . . ? 1 OZW None 'Non-standard residue' 5 OZW E 7 ? . . . . OZW E 6 ? 1_555 . . . . . . . ? 1 OZW None 'Non-standard residue' 6 OZW F 7 ? . . . . OZW F 6 ? 1_555 . . . . . . . ? 1 OZW None 'Non-standard residue' 7 OZW G 7 ? . . . . OZW G 6 ? 1_555 . . . . . . . ? 1 OZW None 'Non-standard residue' 8 ACE A 1 ? ARG A 2 ? ACE A 0 ? 1_555 ARG A 1 ? 1_555 . . ARG 8 ACE None 'Terminal acetylation' 9 ACE B 1 ? ARG B 2 ? ACE B 0 ? 1_555 ARG B 1 ? 1_555 . . ARG 8 ACE None 'Terminal acetylation' 10 ACE C 1 ? ARG C 2 ? ACE C 0 ? 1_555 ARG C 1 ? 1_555 . . ARG 8 ACE None 'Terminal acetylation' 11 ACE D 1 ? ARG D 2 ? ACE D 0 ? 1_555 ARG D 1 ? 1_555 . . ARG 8 ACE None 'Terminal acetylation' 12 ACE E 1 ? ARG E 2 ? ACE E 0 ? 1_555 ARG E 1 ? 1_555 . . ARG 8 ACE None 'Terminal acetylation' 13 ACE F 1 ? ARG F 2 ? ACE F 0 ? 1_555 ARG F 1 ? 1_555 . . ARG 8 ACE None 'Terminal acetylation' 14 ACE G 1 ? ARG G 2 ? ACE G 0 ? 1_555 ARG G 1 ? 1_555 . . ARG 8 ACE None 'Terminal acetylation' 15 NH2 A 9 ? ARG A 8 ? NH2 A 8 ? 1_555 ARG A 7 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' 16 NH2 B 9 ? ARG B 8 ? NH2 B 8 ? 1_555 ARG B 7 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' 17 NH2 C 9 ? ARG C 8 ? NH2 C 8 ? 1_555 ARG C 7 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' 18 NH2 D 9 ? ARG D 8 ? NH2 D 8 ? 1_555 ARG D 7 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' 19 NH2 E 9 ? ARG E 8 ? NH2 E 8 ? 1_555 ARG E 7 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' 20 NH2 F 9 ? ARG F 8 ? NH2 F 8 ? 1_555 ARG F 7 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' 21 NH2 G 9 ? ARG G 8 ? NH2 G 8 ? 1_555 ARG G 7 ? 1_555 . . ARG 8 NH2 None 'Terminal amidation' # _pdbx_entry_details.entry_id 9KU1 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O C HOH 103 ? ? O C HOH 107 ? ? 2.11 2 1 O G HOH 104 ? ? O G HOH 106 ? ? 2.16 3 1 O C HOH 108 ? ? O D HOH 103 ? ? 2.18 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9KU1 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9KU1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 1.9 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 92358 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source SYNTHETIC _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'AzoPep peptide nanofibers' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9KU1 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9KU1 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9KU1 _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id G _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 109 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 7.71 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASP N N N N 48 ASP CA C N S 49 ASP C C N N 50 ASP O O N N 51 ASP CB C N N 52 ASP CG C N N 53 ASP OD1 O N N 54 ASP OD2 O N N 55 ASP OXT O N N 56 ASP H H N N 57 ASP H2 H N N 58 ASP HA H N N 59 ASP HB2 H N N 60 ASP HB3 H N N 61 ASP HD2 H N N 62 ASP HXT H N N 63 HOH O O N N 64 HOH H1 H N N 65 HOH H2 H N N 66 MET N N N N 67 MET CA C N S 68 MET C C N N 69 MET O O N N 70 MET CB C N N 71 MET CG C N N 72 MET SD S N N 73 MET CE C N N 74 MET OXT O N N 75 MET H H N N 76 MET H2 H N N 77 MET HA H N N 78 MET HB2 H N N 79 MET HB3 H N N 80 MET HG2 H N N 81 MET HG3 H N N 82 MET HE1 H N N 83 MET HE2 H N N 84 MET HE3 H N N 85 MET HXT H N N 86 NH2 N N N N 87 NH2 HN1 H N N 88 NH2 HN2 H N N 89 OZW C4 C Y N 90 OZW C5 C Y N 91 OZW C6 C Y N 92 OZW C1 C Y N 93 OZW C2 C Y N 94 OZW C3 C Y N 95 OZW N N N N 96 OZW CA C N S 97 OZW C C N N 98 OZW O O N N 99 OZW CB C N N 100 OZW CG C Y N 101 OZW CD1 C Y N 102 OZW CD2 C Y N 103 OZW CE1 C Y N 104 OZW CE2 C Y N 105 OZW CZ C Y N 106 OZW N1 N N N 107 OZW N2 N N N 108 OZW H41 H N N 109 OZW H51 H N N 110 OZW H11 H N N 111 OZW H21 H N N 112 OZW H31 H N N 113 OZW H H N N 114 OZW H2 H N N 115 OZW HA H N N 116 OZW HB2 H N N 117 OZW HB3 H N N 118 OZW HD11 H N N 119 OZW HD21 H N N 120 OZW HE11 H N N 121 OZW HE21 H N N 122 OZW H12 H N N 123 OZW H22 H N N 124 OZW OXT O N N 125 OZW HXT H N N 126 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASP N CA sing N N 45 ASP N H sing N N 46 ASP N H2 sing N N 47 ASP CA C sing N N 48 ASP CA CB sing N N 49 ASP CA HA sing N N 50 ASP C O doub N N 51 ASP C OXT sing N N 52 ASP CB CG sing N N 53 ASP CB HB2 sing N N 54 ASP CB HB3 sing N N 55 ASP CG OD1 doub N N 56 ASP CG OD2 sing N N 57 ASP OD2 HD2 sing N N 58 ASP OXT HXT sing N N 59 HOH O H1 sing N N 60 HOH O H2 sing N N 61 MET N CA sing N N 62 MET N H sing N N 63 MET N H2 sing N N 64 MET CA C sing N N 65 MET CA CB sing N N 66 MET CA HA sing N N 67 MET C O doub N N 68 MET C OXT sing N N 69 MET CB CG sing N N 70 MET CB HB2 sing N N 71 MET CB HB3 sing N N 72 MET CG SD sing N N 73 MET CG HG2 sing N N 74 MET CG HG3 sing N N 75 MET SD CE sing N N 76 MET CE HE1 sing N N 77 MET CE HE2 sing N N 78 MET CE HE3 sing N N 79 MET OXT HXT sing N N 80 NH2 N HN1 sing N N 81 NH2 N HN2 sing N N 82 OZW O C doub N N 83 OZW N CA sing N N 84 OZW CD1 CE1 doub Y N 85 OZW CD1 CG sing Y N 86 OZW C CA sing N N 87 OZW CB CA sing N N 88 OZW CB CG sing N N 89 OZW CE1 CZ sing Y N 90 OZW CG CD2 doub Y N 91 OZW CZ N2 sing N N 92 OZW CZ CE2 doub Y N 93 OZW CD2 CE2 sing Y N 94 OZW N2 N1 sing N N 95 OZW C2 C4 doub Y N 96 OZW C2 C6 sing Y N 97 OZW N1 C6 sing N N 98 OZW C4 C5 sing Y N 99 OZW C6 C1 doub Y N 100 OZW C5 C3 doub Y N 101 OZW C1 C3 sing Y N 102 OZW C4 H41 sing N N 103 OZW C5 H51 sing N N 104 OZW C1 H11 sing N N 105 OZW C2 H21 sing N N 106 OZW C3 H31 sing N N 107 OZW N H sing N N 108 OZW N H2 sing N N 109 OZW CA HA sing N N 110 OZW CB HB2 sing N N 111 OZW CB HB3 sing N N 112 OZW CD1 HD11 sing N N 113 OZW CD2 HD21 sing N N 114 OZW CE1 HE11 sing N N 115 OZW CE2 HE21 sing N N 116 OZW N1 H12 sing N N 117 OZW N2 H22 sing N N 118 OZW C OXT sing N N 119 OZW OXT HXT sing N N 120 # _em_admin.current_status REL _em_admin.deposition_date 2024-12-03 _em_admin.deposition_site PDBJ _em_admin.entry_id 9KU1 _em_admin.last_update 2026-06-10 _em_admin.map_release_date 2026-06-10 _em_admin.title 'Cryo-electron microscopy structure of nanofibers formed by reverse azobenzene peptides.' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.ncbi_tax_id 32630 _em_entity_assembly_naturalsource.organism 'synthetic construct' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.57 _em_helical_entity.axial_rise_per_subunit 2.3766 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'FEI FALCON IV (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9KU1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #