HEADER TRANSFERASE 04-DEC-24 9KUQ TITLE CRYSTAL STRUCTURE OF A C45 ISOPRENYL DIPHOSPHATE SYNTHASE, RV0562 FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: NONAPRENYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: (2E,6E)-FARNESYL DIPHOSPHATE SYNTHASE,E,E-FPP SYNTHASE,FPP COMPND 5 SYNTHASE,GERANYLGERANYL DIPHOSPHATE SYNTHASE,GGPP SYNTHASE,GGPS; COMPND 6 EC: 2.5.1.85,2.5.1.10,2.5.1.29; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GRCC1, RV0562; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOPRENYL DIPHOSPHATE SYNTHASES, TERPENOIDS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.WANG,Y.YANG,C.-C.CHEN,R.-T.GUO REVDAT 2 06-AUG-25 9KUQ 1 JRNL REVDAT 1 09-JUL-25 9KUQ 0 JRNL AUTH Q.WANG,Y.YANG,B.HE,J.W.HUANG,C.J.KUO,C.C.CHEN,R.T.GUO JRNL TITL STRUCTURAL INSIGHT OF A BI-FUNCTIONAL ISOPRENYL DIPHOSPHATE JRNL TITL 2 SYNTHASE RV0562 FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF INT.J.BIOL.MACROMOL. V. 318 45171 2025 JRNL REFN ISSN 0141-8130 JRNL PMID 40513738 JRNL DOI 10.1016/J.IJBIOMAC.2025.145171 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 21428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1154 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1555 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2307 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.28000 REMARK 3 B22 (A**2) : 0.28000 REMARK 3 B33 (A**2) : -0.90000 REMARK 3 B12 (A**2) : 0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.186 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.786 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2330 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2271 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3153 ; 1.641 ; 1.636 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5211 ; 1.323 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 303 ; 6.192 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;31.614 ;20.709 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 386 ;16.980 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.427 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 311 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2644 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 487 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1230 ; 5.319 ; 5.290 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1229 ; 5.297 ; 5.290 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1527 ; 6.859 ; 7.891 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1528 ; 6.867 ; 7.893 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1099 ; 5.502 ; 5.881 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1100 ; 5.500 ; 5.884 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1627 ; 7.733 ; 8.610 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2702 ; 9.859 ;65.952 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2689 ; 9.865 ;65.889 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9KUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300054345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21428 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.2100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 6000, 0.6 M BICINE, PH 9.0, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.69933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.84967 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.84967 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.69933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 455 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 510 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 ASN A 53 REMARK 465 ALA A 54 REMARK 465 GLN A 104 REMARK 465 ARG A 107 REMARK 465 GLY A 108 REMARK 465 ALA A 109 REMARK 465 PRO A 110 REMARK 465 SER A 111 REMARK 465 ALA A 112 REMARK 465 ASN A 113 REMARK 465 ALA A 114 REMARK 465 GLN A 115 REMARK 465 TRP A 116 REMARK 465 GLY A 164 REMARK 465 THR A 165 REMARK 465 SER A 166 REMARK 465 GLU A 167 REMARK 465 ASN A 168 REMARK 465 VAL A 169 REMARK 465 GLY A 260 REMARK 465 PRO A 261 REMARK 465 HIS A 334 REMARK 465 GLY A 335 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 505 O HOH A 505 6554 2.01 REMARK 500 O HOH A 546 O HOH A 546 6554 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 119 115.55 -35.84 REMARK 500 VAL A 247 139.78 -38.67 REMARK 500 ARG A 257 40.02 -104.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 544 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 545 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 7.15 ANGSTROMS REMARK 525 HOH A 547 DISTANCE = 7.71 ANGSTROMS REMARK 525 HOH A 548 DISTANCE = 7.77 ANGSTROMS REMARK 525 HOH A 549 DISTANCE = 9.60 ANGSTROMS DBREF 9KUQ A 1 335 UNP O06428 NPPPS_MYCTU 1 335 SEQRES 1 A 335 MET ARG THR PRO ALA THR VAL VAL ALA GLY VAL ASP LEU SEQRES 2 A 335 GLY ASP ALA VAL PHE ALA ALA ALA VAL ARG ALA GLY VAL SEQRES 3 A 335 ALA ARG VAL GLU GLN LEU MET ASP THR GLU LEU ARG GLN SEQRES 4 A 335 ALA ASP GLU VAL MET SER ASP SER LEU LEU HIS LEU PHE SEQRES 5 A 335 ASN ALA GLY GLY LYS ARG PHE ARG PRO LEU PHE THR VAL SEQRES 6 A 335 LEU SER ALA GLN ILE GLY PRO GLN PRO ASP ALA ALA ALA SEQRES 7 A 335 VAL THR VAL ALA GLY ALA VAL ILE GLU MET ILE HIS LEU SEQRES 8 A 335 ALA THR LEU TYR HIS ASP ASP VAL MET ASP GLU ALA GLN SEQRES 9 A 335 VAL ARG ARG GLY ALA PRO SER ALA ASN ALA GLN TRP GLY SEQRES 10 A 335 ASN ASN VAL ALA ILE LEU ALA GLY ASP TYR LEU LEU ALA SEQRES 11 A 335 THR ALA SER ARG LEU VAL ALA ARG LEU GLY PRO GLU ALA SEQRES 12 A 335 VAL ARG ILE ILE ALA ASP THR PHE ALA GLN LEU VAL THR SEQRES 13 A 335 GLY GLN MET ARG GLU THR ARG GLY THR SER GLU ASN VAL SEQRES 14 A 335 ASP SER ILE GLU GLN TYR LEU LYS VAL VAL GLN GLU LYS SEQRES 15 A 335 THR GLY SER LEU ILE GLY ALA ALA GLY ARG LEU GLY GLY SEQRES 16 A 335 MET PHE SER GLY ALA THR ASP GLU GLN VAL GLU ARG LEU SEQRES 17 A 335 SER ARG LEU GLY GLY VAL VAL GLY THR ALA PHE GLN ILE SEQRES 18 A 335 ALA ASP ASP ILE ILE ASP ILE ASP SER GLU SER ASP GLU SEQRES 19 A 335 SER GLY LYS LEU PRO GLY THR ASP VAL ARG GLU GLY VAL SEQRES 20 A 335 HIS THR LEU PRO MET LEU TYR ALA LEU ARG GLU SER GLY SEQRES 21 A 335 PRO ASP CYS ALA ARG LEU ARG ALA LEU LEU ASN GLY PRO SEQRES 22 A 335 VAL ASP ASP ASP ALA GLU VAL ARG GLU ALA LEU THR LEU SEQRES 23 A 335 LEU ARG ALA SER PRO GLY MET ALA ARG ALA LYS ASP VAL SEQRES 24 A 335 LEU ALA GLN TYR ALA ALA GLN ALA ARG HIS GLU LEU ALA SEQRES 25 A 335 LEU LEU PRO ASP VAL PRO GLY ARG ARG ALA LEU ALA ALA SEQRES 26 A 335 LEU VAL ASP TYR THR VAL SER ARG HIS GLY FORMUL 2 HOH *149(H2 O) HELIX 1 AA1 ASP A 15 GLN A 39 1 25 HELIX 2 AA2 ALA A 40 VAL A 43 5 4 HELIX 3 AA3 MET A 44 PHE A 52 1 9 HELIX 4 AA4 ARG A 58 GLN A 69 1 12 HELIX 5 AA5 ALA A 76 ASP A 101 1 26 HELIX 6 AA6 VAL A 120 ARG A 138 1 19 HELIX 7 AA7 GLY A 140 THR A 162 1 23 HELIX 8 AA8 SER A 171 THR A 183 1 13 HELIX 9 AA9 THR A 183 SER A 198 1 16 HELIX 10 AB1 THR A 201 ASP A 227 1 27 HELIX 11 AB2 GLY A 240 GLY A 246 1 7 HELIX 12 AB3 THR A 249 ARG A 257 1 9 HELIX 13 AB4 CYS A 263 ASN A 271 1 9 HELIX 14 AB5 ASP A 276 ALA A 289 1 14 HELIX 15 AB6 SER A 290 LEU A 313 1 24 HELIX 16 AB7 VAL A 317 ARG A 333 1 17 SHEET 1 AA1 2 VAL A 7 VAL A 8 0 SHEET 2 AA1 2 VAL A 11 ASP A 12 -1 O VAL A 11 N VAL A 8 SSBOND 1 MET A 44 MET A 159 1555 4555 1.97 CRYST1 84.192 84.192 80.549 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011878 0.006858 0.000000 0.00000 SCALE2 0.000000 0.013715 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012415 0.00000 TER 2308 ARG A 333 HETATM 2309 O HOH A 401 41.858 11.395 18.450 1.00 50.46 O HETATM 2310 O HOH A 402 20.025 -18.800 0.871 1.00 59.18 O HETATM 2311 O HOH A 403 13.730 1.039 0.218 1.00 70.56 O HETATM 2312 O HOH A 404 37.776 16.146 20.030 1.00 55.90 O HETATM 2313 O HOH A 405 22.215 -8.940 1.800 1.00 51.47 O HETATM 2314 O HOH A 406 26.320 -3.969 0.641 1.00 48.08 O HETATM 2315 O HOH A 407 48.746 14.425 2.682 1.00 52.58 O HETATM 2316 O HOH A 408 42.101 26.561 1.061 1.00 57.40 O HETATM 2317 O HOH A 409 27.207 -0.872 -21.656 1.00 61.84 O HETATM 2318 O HOH A 410 24.300 5.196 9.544 1.00 51.71 O HETATM 2319 O HOH A 411 36.425 20.526 15.543 1.00 46.52 O HETATM 2320 O HOH A 412 25.220 -6.332 1.920 1.00 46.40 O HETATM 2321 O HOH A 413 27.127 26.367 13.371 1.00 38.46 O HETATM 2322 O HOH A 414 33.646 20.849 -10.732 1.00 62.36 O HETATM 2323 O HOH A 415 48.341 12.312 16.739 1.00 67.54 O HETATM 2324 O HOH A 416 28.363 -13.546 5.020 1.00 60.39 O HETATM 2325 O HOH A 417 46.414 11.309 -10.895 1.00 43.34 O HETATM 2326 O HOH A 418 40.595 3.410 4.909 1.00 41.80 O HETATM 2327 O HOH A 419 24.391 10.513 -1.228 1.00 41.16 O HETATM 2328 O HOH A 420 39.486 30.571 13.346 1.00 54.75 O HETATM 2329 O HOH A 421 27.505 -11.555 10.807 1.00 49.43 O HETATM 2330 O HOH A 422 43.782 26.610 -5.299 1.00 49.12 O HETATM 2331 O HOH A 423 25.419 30.562 0.010 1.00 54.92 O HETATM 2332 O HOH A 424 44.152 7.616 -9.782 1.00 45.51 O HETATM 2333 O HOH A 425 26.215 22.101 16.845 1.00 50.11 O HETATM 2334 O HOH A 426 23.772 -6.467 -5.630 1.00 46.44 O HETATM 2335 O HOH A 427 40.899 20.228 -11.159 1.00 54.81 O HETATM 2336 O HOH A 428 20.385 7.374 11.601 1.00 52.25 O HETATM 2337 O HOH A 429 32.411 13.912 -9.856 1.00 41.95 O HETATM 2338 O HOH A 430 37.868 1.574 8.147 1.00 66.66 O HETATM 2339 O HOH A 431 32.157 30.171 6.473 1.00 47.69 O HETATM 2340 O HOH A 432 34.353 26.910 -7.192 1.00 51.51 O HETATM 2341 O HOH A 433 34.761 4.906 -14.617 1.00 61.37 O HETATM 2342 O HOH A 434 25.427 3.593 -1.038 1.00 51.43 O HETATM 2343 O HOH A 435 38.985 12.008 -11.634 1.00 40.25 O HETATM 2344 O HOH A 436 22.728 28.188 12.591 1.00 51.98 O HETATM 2345 O HOH A 437 21.985 10.487 -1.665 1.00 51.21 O HETATM 2346 O HOH A 438 5.063 11.915 18.070 1.00 54.59 O HETATM 2347 O HOH A 439 45.553 12.957 8.408 1.00 46.82 O HETATM 2348 O HOH A 440 37.966 27.370 11.760 1.00 42.23 O HETATM 2349 O HOH A 441 35.484 29.401 -0.032 1.00 43.32 O HETATM 2350 O HOH A 442 11.059 6.269 -19.096 1.00 68.41 O HETATM 2351 O HOH A 443 43.225 3.449 -7.627 1.00 47.61 O HETATM 2352 O HOH A 444 45.456 7.715 3.934 1.00 48.67 O HETATM 2353 O HOH A 445 31.023 20.683 12.227 1.00 38.10 O HETATM 2354 O HOH A 446 20.434 9.439 0.024 1.00 50.52 O HETATM 2355 O HOH A 447 16.353 25.606 20.814 1.00 58.36 O HETATM 2356 O HOH A 448 25.618 9.862 5.641 1.00 43.20 O HETATM 2357 O HOH A 449 24.434 -20.469 -21.474 1.00 60.49 O HETATM 2358 O HOH A 450 38.052 -2.634 -4.223 1.00 62.94 O HETATM 2359 O HOH A 451 33.521 21.063 19.262 1.00 55.65 O HETATM 2360 O HOH A 452 29.837 4.682 6.513 1.00 54.83 O HETATM 2361 O HOH A 453 32.354 30.507 11.603 1.00 46.40 O HETATM 2362 O HOH A 454 39.730 5.842 -13.952 1.00 52.67 O HETATM 2363 O HOH A 455 12.463 -21.587 -13.425 0.50 58.29 O HETATM 2364 O HOH A 456 30.212 26.272 -5.232 1.00 41.77 O HETATM 2365 O HOH A 457 33.898 21.266 11.259 1.00 50.91 O HETATM 2366 O HOH A 458 30.580 30.097 9.320 1.00 38.15 O HETATM 2367 O HOH A 459 29.992 -3.521 3.962 1.00 51.50 O HETATM 2368 O HOH A 460 -0.447 7.158 7.621 1.00 56.64 O HETATM 2369 O HOH A 461 27.301 -9.268 2.384 1.00 42.52 O HETATM 2370 O HOH A 462 39.491 31.238 -5.089 1.00 47.04 O HETATM 2371 O HOH A 463 27.785 20.005 -5.962 1.00 36.60 O HETATM 2372 O HOH A 464 21.388 -11.068 6.702 1.00 51.99 O HETATM 2373 O HOH A 465 17.929 5.248 9.015 1.00 72.00 O HETATM 2374 O HOH A 466 7.412 7.813 8.339 1.00 53.96 O HETATM 2375 O HOH A 467 3.146 11.140 16.613 1.00 71.24 O HETATM 2376 O HOH A 468 8.920 20.484 20.438 1.00 68.23 O HETATM 2377 O HOH A 469 43.079 6.637 -1.504 1.00 47.39 O HETATM 2378 O HOH A 470 16.524 7.593 17.410 1.00 49.82 O HETATM 2379 O HOH A 471 0.031 -2.765 -3.247 1.00 71.78 O HETATM 2380 O HOH A 472 12.802 16.638 23.058 1.00 56.22 O HETATM 2381 O HOH A 473 50.404 19.034 -2.865 1.00 67.68 O HETATM 2382 O HOH A 474 40.642 -3.123 -12.961 1.00 59.25 O HETATM 2383 O HOH A 475 31.464 12.140 16.687 1.00 46.89 O HETATM 2384 O HOH A 476 41.213 28.843 -7.223 1.00 54.20 O HETATM 2385 O HOH A 477 10.838 0.312 10.665 1.00 49.83 O HETATM 2386 O HOH A 478 17.300 3.333 0.444 1.00 58.12 O HETATM 2387 O HOH A 479 32.236 -12.463 -4.694 1.00 56.53 O HETATM 2388 O HOH A 480 4.411 23.848 16.323 1.00 62.56 O HETATM 2389 O HOH A 481 22.811 5.354 5.900 1.00 53.62 O HETATM 2390 O HOH A 482 23.973 5.754 2.699 1.00 57.93 O HETATM 2391 O HOH A 483 19.634 30.949 -7.586 1.00 57.42 O HETATM 2392 O HOH A 484 47.997 12.110 1.145 1.00 56.93 O HETATM 2393 O HOH A 485 22.392 18.758 20.931 1.00 59.86 O HETATM 2394 O HOH A 486 12.564 -15.546 -17.721 1.00 65.14 O HETATM 2395 O HOH A 487 32.661 31.381 2.722 1.00 55.95 O HETATM 2396 O HOH A 488 35.935 28.646 13.047 1.00 50.82 O HETATM 2397 O HOH A 489 40.429 0.072 -15.004 1.00 71.32 O HETATM 2398 O HOH A 490 40.991 -0.089 -5.552 1.00 61.71 O HETATM 2399 O HOH A 491 9.428 3.421 8.619 1.00 54.63 O HETATM 2400 O HOH A 492 34.119 -5.082 6.013 1.00 59.83 O HETATM 2401 O HOH A 493 36.687 12.440 -12.256 1.00 58.64 O HETATM 2402 O HOH A 494 7.823 24.307 15.504 1.00 69.97 O HETATM 2403 O HOH A 495 14.772 -22.140 -15.749 1.00 67.30 O HETATM 2404 O HOH A 496 16.775 10.200 23.876 1.00 57.77 O HETATM 2405 O HOH A 497 41.088 27.581 12.286 1.00 61.01 O HETATM 2406 O HOH A 498 37.144 -9.070 0.259 1.00 60.47 O HETATM 2407 O HOH A 499 42.899 12.297 21.055 1.00 56.42 O HETATM 2408 O HOH A 500 47.084 22.892 -8.813 1.00 46.03 O HETATM 2409 O HOH A 501 34.425 15.041 20.266 1.00 59.33 O HETATM 2410 O HOH A 502 9.775 8.372 -10.482 1.00 46.77 O HETATM 2411 O HOH A 503 26.434 21.963 -8.199 1.00 61.56 O HETATM 2412 O HOH A 504 25.509 7.144 6.172 1.00 48.89 O HETATM 2413 O HOH A 505 14.506 -25.169 -12.419 1.00 68.18 O HETATM 2414 O HOH A 506 1.185 -4.682 -1.555 1.00 68.22 O HETATM 2415 O HOH A 507 35.268 -7.698 -3.166 1.00 61.89 O HETATM 2416 O HOH A 508 26.291 29.631 9.970 1.00 43.03 O HETATM 2417 O HOH A 509 28.187 -5.582 -21.045 1.00 63.79 O HETATM 2418 O HOH A 510 12.295 21.295 0.000 0.50 64.17 O HETATM 2419 O HOH A 511 9.721 -16.023 -18.673 1.00 68.76 O HETATM 2420 O HOH A 512 27.141 32.085 5.578 1.00 66.81 O HETATM 2421 O HOH A 513 32.446 -4.962 3.787 1.00 50.19 O HETATM 2422 O HOH A 514 46.157 9.441 -9.410 1.00 45.27 O HETATM 2423 O HOH A 515 17.002 10.407 18.777 1.00 49.28 O HETATM 2424 O HOH A 516 30.944 30.797 0.680 1.00 67.04 O HETATM 2425 O HOH A 517 12.104 -1.194 -7.011 1.00 66.30 O HETATM 2426 O HOH A 518 17.489 -2.863 -22.222 1.00 59.53 O HETATM 2427 O HOH A 519 39.195 -5.543 0.047 1.00 67.07 O HETATM 2428 O HOH A 520 45.087 7.864 -2.452 1.00 49.22 O HETATM 2429 O HOH A 521 24.123 -0.496 3.376 1.00 59.42 O HETATM 2430 O HOH A 522 44.088 7.657 -12.861 1.00 49.39 O HETATM 2431 O HOH A 523 14.183 -13.005 -21.093 1.00 61.15 O HETATM 2432 O HOH A 524 9.959 0.916 7.923 1.00 62.93 O HETATM 2433 O HOH A 525 44.666 5.209 -8.842 1.00 54.14 O HETATM 2434 O HOH A 526 15.576 20.211 -0.177 1.00 72.89 O HETATM 2435 O HOH A 527 32.533 27.999 -5.453 1.00 60.62 O HETATM 2436 O HOH A 528 7.462 -6.471 -1.602 1.00 60.45 O HETATM 2437 O HOH A 529 29.903 20.972 -12.255 1.00 58.63 O HETATM 2438 O HOH A 530 17.815 -1.128 -3.199 1.00 59.19 O HETATM 2439 O HOH A 531 32.344 16.436 21.234 1.00 50.29 O HETATM 2440 O HOH A 532 37.065 -4.613 -5.277 1.00 69.00 O HETATM 2441 O HOH A 533 40.128 10.859 -13.651 1.00 33.90 O HETATM 2442 O HOH A 534 46.034 1.925 4.867 1.00 56.71 O HETATM 2443 O HOH A 535 27.246 -1.054 -25.897 0.50 53.14 O HETATM 2444 O HOH A 536 15.137 0.638 -24.011 1.00 67.52 O HETATM 2445 O HOH A 537 48.283 2.730 1.167 1.00 70.90 O HETATM 2446 O HOH A 538 21.907 33.607 -9.891 1.00 62.98 O HETATM 2447 O HOH A 539 47.159 24.257 1.704 1.00 57.69 O HETATM 2448 O HOH A 540 43.224 1.244 -16.660 1.00 72.81 O HETATM 2449 O HOH A 541 2.073 -4.925 2.021 1.00 60.01 O HETATM 2450 O HOH A 542 48.666 15.554 21.399 1.00 51.58 O HETATM 2451 O HOH A 543 43.900 4.820 -13.777 1.00 52.77 O HETATM 2452 O HOH A 544 -0.248 6.503 21.414 1.00 62.48 O HETATM 2453 O HOH A 545 47.467 29.736 10.397 1.00 54.88 O HETATM 2454 O HOH A 546 4.809 -8.805 -12.393 1.00 62.17 O HETATM 2455 O HOH A 547 -0.796 -5.521 -8.079 1.00 71.23 O HETATM 2456 O HOH A 548 28.011 26.900 -14.314 1.00 65.29 O HETATM 2457 O HOH A 549 42.603 16.678 26.443 1.00 63.00 O MASTER 350 0 0 16 2 0 0 6 2456 1 0 26 END