HEADER OXIDOREDUCTASE 04-DEC-24 9KVA TITLE ECR CK PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CROTONYL-COA REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM METALLIDURANS; SOURCE 3 ORGANISM_TAXID: 489722; SOURCE 4 GENE: MESS2_300088; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OCTONAYL COA REDUCTASE, C-CYCLING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.KULAKMAN,H.DEMIRCI,S.WAKATSUKI,I.MATHEWS REVDAT 1 10-DEC-25 9KVA 0 JRNL AUTH C.KULAKMAN,H.DEMIRCI,S.WAKATSUKI,I.MATHEWS JRNL TITL ECR CK PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 158404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8338 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 10156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 8338 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : 0.64000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.448 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.970 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6480 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 6016 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8811 ; 1.692 ; 1.791 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13837 ; 0.609 ; 1.751 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 824 ; 6.803 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;11.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 971 ;12.510 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 939 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7838 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1510 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3294 ; 9.712 ; 2.928 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3294 ; 9.709 ; 2.928 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4118 ;12.180 ; 5.280 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4119 ;12.180 ; 5.280 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3186 ;10.386 ; 3.346 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3184 ;10.373 ; 3.346 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4694 ;14.360 ; 5.959 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7155 ;16.845 ;76.390 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7085 ;16.915 ;92.100 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 12496 ; 6.205 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9KVA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300053957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : SI(11) REMARK 200 OPTICS : RH COATED COLLIMATING MIRRORS, K REMARK 200 -B FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 166742 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 35.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 1.371 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% 2-PROPANOL, 100MM TRIS BASE/ REMARK 280 HYDROCHLORIC ACID PH=8.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 93.99500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 93.99500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 52.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 750 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 768 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 793 O HOH A 797 1.10 REMARK 500 NZ LYS B 411 O HOH B 601 1.89 REMARK 500 O HOH B 836 O HOH B 844 2.09 REMARK 500 O3S EPE B 502 O HOH B 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 390 CD GLU B 390 OE2 0.109 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 336 NE - CZ - NH2 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 19 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 ARG B 376 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 255 2.43 -65.20 REMARK 500 HIS A 301 -29.34 177.64 REMARK 500 ALA A 324 -179.74 -172.87 REMARK 500 LEU A 393 150.42 88.88 REMARK 500 VAL A 402 -85.72 -124.86 REMARK 500 SER B 132 -62.41 -133.71 REMARK 500 VAL B 133 -167.70 -63.04 REMARK 500 HIS B 301 -32.35 176.97 REMARK 500 ALA B 324 -178.15 -171.19 REMARK 500 GLU B 374 128.87 -175.19 REMARK 500 VAL B 402 -86.06 -126.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 373 GLU B 374 -149.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 19 0.16 SIDE CHAIN REMARK 500 ARG B 19 0.17 SIDE CHAIN REMARK 500 ARG B 134 0.14 SIDE CHAIN REMARK 500 ARG B 223 0.09 SIDE CHAIN REMARK 500 ARG B 376 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 501 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 504 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 64 OD1 REMARK 620 2 SER A 94 OG 88.8 REMARK 620 3 GLY A 146 O 131.2 91.6 REMARK 620 4 HOH A 688 O 91.8 133.0 54.5 REMARK 620 N 1 2 3 DBREF 9KVA A 3 412 UNP M5EQJ7 M5EQJ7_9HYPH 3 412 DBREF 9KVA B 3 412 UNP M5EQJ7 M5EQJ7_9HYPH 3 412 SEQRES 1 A 410 ASP SER VAL PRO ILE GLY SER LEU PRO PRO VAL GLY GLU SEQRES 2 A 410 VAL PRO ASN ARG MET PHE ALA GLN VAL VAL ARG SER ASN SEQRES 3 A 410 ARG LEU GLY ASP PRO ILE ASP ALA PHE GLN ILE GLU GLN SEQRES 4 A 410 VAL ASP VAL PRO LYS PRO GLY GLU GLY GLU VAL LEU VAL SEQRES 5 A 410 ALA VAL MET ALA ALA GLY LEU ASN PHE ASN ASN VAL TRP SEQRES 6 A 410 ALA ALA ARG GLY VAL PRO ILE ASP VAL ILE ALA ALA ARG SEQRES 7 A 410 LYS ALA GLN GLY SER PRO TYR ASP PHE HIS ILE GLY GLY SEQRES 8 A 410 SER ASP ALA SER GLY ILE VAL TYR ALA VAL GLY ALA GLY SEQRES 9 A 410 VAL LYS HIS VAL GLN VAL GLY ASP TYR VAL VAL VAL HIS SEQRES 10 A 410 PRO GLY TYR TRP ASP PRO LYS ALA PRO ASP VAL VAL SER SEQRES 11 A 410 VAL ARG ASP PRO MET PHE SER ALA SER ALA GLN ILE TRP SEQRES 12 A 410 GLY TYR ASN THR ASN PHE GLY SER PHE GLY GLN PHE CYS SEQRES 13 A 410 LEU ALA TYR GLU HIS GLN ILE LEU PRO LYS ALA LYS HIS SEQRES 14 A 410 LEU THR TRP GLU GLU ALA ALA ALA PRO THR LEU VAL GLY SEQRES 15 A 410 THR THR ALA TYR ARG MET LEU HIS GLY TRP THR GLY HIS SEQRES 16 A 410 THR VAL GLU LYS ASP ASP VAL VAL LEU VAL TRP GLY GLY SEQRES 17 A 410 SER GLY GLY LEU GLY SER GLN ALA ILE GLN ILE ALA ARG SEQRES 18 A 410 GLU ALA GLY GLY ILE PRO ILE ALA VAL VAL SER ASP ALA SEQRES 19 A 410 ALA LYS GLY GLU TYR CYS LYS SER LEU GLY ALA LYS GLY SEQRES 20 A 410 TYR ILE ASP ARG ARG GLU PHE ASN HIS TRP GLY GLN PRO SEQRES 21 A 410 PRO HIS TRP THR ASP ASP ALA GLY GLN LYS VAL TRP THR SEQRES 22 A 410 ALA GLN ALA ARG ALA PHE GLY LYS LYS ILE TRP ASP ILE SEQRES 23 A 410 LEU GLY GLU ARG ARG ASN PRO ARG ILE VAL LEU GLU HIS SEQRES 24 A 410 PRO GLY GLU ASP THR ILE PRO THR SER ILE PHE CYS CYS SEQRES 25 A 410 ASP THR GLY GLY MET VAL VAL ILE CYS ALA GLY THR THR SEQRES 26 A 410 GLY TYR SER ALA VAL VAL ASP LEU ARG TYR HIS TRP VAL SEQRES 27 A 410 ARG GLN LYS ARG LEU GLN GLY SER HIS GLY THR ASN THR SEQRES 28 A 410 GLU GLN ALA ARG ALA TYR ASN ASP LEU VAL TYR SER GLY SEQRES 29 A 410 ARG ILE ASP PRO CYS LEU GLY GLU VAL ARG SER PHE LEU SEQRES 30 A 410 ASP VAL GLY LYS ALA HIS GLN ASP MET MET GLU GLY LYS SEQRES 31 A 410 LEU ALA HIS GLY ASN THR CYS ILE LEU VAL GLY ALA ALA SEQRES 32 A 410 ALA LYS SER LEU GLY LYS GLN SEQRES 1 B 410 ASP SER VAL PRO ILE GLY SER LEU PRO PRO VAL GLY GLU SEQRES 2 B 410 VAL PRO ASN ARG MET PHE ALA GLN VAL VAL ARG SER ASN SEQRES 3 B 410 ARG LEU GLY ASP PRO ILE ASP ALA PHE GLN ILE GLU GLN SEQRES 4 B 410 VAL ASP VAL PRO LYS PRO GLY GLU GLY GLU VAL LEU VAL SEQRES 5 B 410 ALA VAL MET ALA ALA GLY LEU ASN PHE ASN ASN VAL TRP SEQRES 6 B 410 ALA ALA ARG GLY VAL PRO ILE ASP VAL ILE ALA ALA ARG SEQRES 7 B 410 LYS ALA GLN GLY SER PRO TYR ASP PHE HIS ILE GLY GLY SEQRES 8 B 410 SER ASP ALA SER GLY ILE VAL TYR ALA VAL GLY ALA GLY SEQRES 9 B 410 VAL LYS HIS VAL GLN VAL GLY ASP TYR VAL VAL VAL HIS SEQRES 10 B 410 PRO GLY TYR TRP ASP PRO LYS ALA PRO ASP VAL VAL SER SEQRES 11 B 410 VAL ARG ASP PRO MET PHE SER ALA SER ALA GLN ILE TRP SEQRES 12 B 410 GLY TYR ASN THR ASN PHE GLY SER PHE GLY GLN PHE CYS SEQRES 13 B 410 LEU ALA TYR GLU HIS GLN ILE LEU PRO LYS ALA LYS HIS SEQRES 14 B 410 LEU THR TRP GLU GLU ALA ALA ALA PRO THR LEU VAL GLY SEQRES 15 B 410 THR THR ALA TYR ARG MET LEU HIS GLY TRP THR GLY HIS SEQRES 16 B 410 THR VAL GLU LYS ASP ASP VAL VAL LEU VAL TRP GLY GLY SEQRES 17 B 410 SER GLY GLY LEU GLY SER GLN ALA ILE GLN ILE ALA ARG SEQRES 18 B 410 GLU ALA GLY GLY ILE PRO ILE ALA VAL VAL SER ASP ALA SEQRES 19 B 410 ALA LYS GLY GLU TYR CYS LYS SER LEU GLY ALA LYS GLY SEQRES 20 B 410 TYR ILE ASP ARG ARG GLU PHE ASN HIS TRP GLY GLN PRO SEQRES 21 B 410 PRO HIS TRP THR ASP ASP ALA GLY GLN LYS VAL TRP THR SEQRES 22 B 410 ALA GLN ALA ARG ALA PHE GLY LYS LYS ILE TRP ASP ILE SEQRES 23 B 410 LEU GLY GLU ARG ARG ASN PRO ARG ILE VAL LEU GLU HIS SEQRES 24 B 410 PRO GLY GLU ASP THR ILE PRO THR SER ILE PHE CYS CYS SEQRES 25 B 410 ASP THR GLY GLY MET VAL VAL ILE CYS ALA GLY THR THR SEQRES 26 B 410 GLY TYR SER ALA VAL VAL ASP LEU ARG TYR HIS TRP VAL SEQRES 27 B 410 ARG GLN LYS ARG LEU GLN GLY SER HIS GLY THR ASN THR SEQRES 28 B 410 GLU GLN ALA ARG ALA TYR ASN ASP LEU VAL TYR SER GLY SEQRES 29 B 410 ARG ILE ASP PRO CYS LEU GLY GLU VAL ARG SER PHE LEU SEQRES 30 B 410 ASP VAL GLY LYS ALA HIS GLN ASP MET MET GLU GLY LYS SEQRES 31 B 410 LEU ALA HIS GLY ASN THR CYS ILE LEU VAL GLY ALA ALA SEQRES 32 B 410 ALA LYS SER LEU GLY LYS GLN HET P6G A 501 16 HET PEG A 502 7 HET EPE A 503 15 HET NA A 504 1 HET TRS B 501 8 HET EPE B 502 15 HETNAM P6G HEXAETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM NA SODIUM ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN EPE HEPES HETSYN TRS TRIS BUFFER FORMUL 3 P6G C12 H26 O7 FORMUL 4 PEG C4 H10 O3 FORMUL 5 EPE 2(C8 H18 N2 O4 S) FORMUL 6 NA NA 1+ FORMUL 7 TRS C4 H12 N O3 1+ FORMUL 9 HOH *453(H2 O) HELIX 1 AA1 ARG A 26 LEU A 30 5 5 HELIX 2 AA2 ASP A 32 PHE A 37 1 6 HELIX 3 AA3 PHE A 63 GLY A 71 1 9 HELIX 4 AA4 ASP A 75 GLN A 83 1 9 HELIX 5 AA5 PRO A 128 VAL A 133 1 6 HELIX 6 AA6 ASP A 135 SER A 139 5 5 HELIX 7 AA7 THR A 173 ALA A 179 1 7 HELIX 8 AA8 PRO A 180 GLY A 193 1 14 HELIX 9 AA9 GLY A 212 ALA A 225 1 14 HELIX 10 AB1 ASP A 235 LEU A 245 1 11 HELIX 11 AB2 ARG A 254 PHE A 256 5 3 HELIX 12 AB3 ASP A 267 GLY A 290 1 24 HELIX 13 AB4 THR A 306 CYS A 314 1 9 HELIX 14 AB5 LEU A 335 TRP A 339 1 5 HELIX 15 AB6 ASN A 352 SER A 365 1 14 HELIX 16 AB7 ASP A 380 GLU A 390 1 11 HELIX 17 AB8 ARG B 26 LEU B 30 5 5 HELIX 18 AB9 ASP B 32 PHE B 37 1 6 HELIX 19 AC1 PHE B 63 GLY B 71 1 9 HELIX 20 AC2 ASP B 75 GLN B 83 1 9 HELIX 21 AC3 ASP B 135 SER B 139 5 5 HELIX 22 AC4 THR B 173 ALA B 179 1 7 HELIX 23 AC5 PRO B 180 GLY B 193 1 14 HELIX 24 AC6 GLY B 212 ALA B 225 1 14 HELIX 25 AC7 ASP B 235 LEU B 245 1 11 HELIX 26 AC8 ARG B 254 PHE B 256 5 3 HELIX 27 AC9 ASP B 267 GLY B 290 1 24 HELIX 28 AD1 THR B 306 CYS B 314 1 9 HELIX 29 AD2 LEU B 335 TRP B 339 1 5 HELIX 30 AD3 ASN B 352 SER B 365 1 14 HELIX 31 AD4 ASP B 380 GLU B 390 1 11 SHEET 1 AA1 3 GLN A 38 ASP A 43 0 SHEET 2 AA1 3 ARG A 19 VAL A 25 -1 N VAL A 24 O GLN A 38 SHEET 3 AA1 3 HIS A 90 ILE A 91 -1 O HIS A 90 N VAL A 25 SHEET 1 AA2 5 PHE A 157 TYR A 161 0 SHEET 2 AA2 5 GLU A 51 GLY A 60 -1 N VAL A 52 O ALA A 160 SHEET 3 AA2 5 ASP A 95 VAL A 103 -1 O ILE A 99 N ALA A 55 SHEET 4 AA2 5 TYR A 115 VAL A 118 -1 O VAL A 116 N GLY A 98 SHEET 5 AA2 5 ILE A 165 PRO A 167 -1 O LEU A 166 N VAL A 117 SHEET 1 AA3 4 PHE A 157 TYR A 161 0 SHEET 2 AA3 4 GLU A 51 GLY A 60 -1 N VAL A 52 O ALA A 160 SHEET 3 AA3 4 ASN A 397 LEU A 401 -1 O ILE A 400 N ALA A 59 SHEET 4 AA3 4 LEU A 372 SER A 377 1 N GLY A 373 O ASN A 397 SHEET 1 AA4 2 GLY A 121 TYR A 122 0 SHEET 2 AA4 2 GLN A 143 ILE A 144 -1 O GLN A 143 N TYR A 122 SHEET 1 AA512 GLY A 249 ASP A 252 0 SHEET 2 AA512 ILE A 228 VAL A 233 1 N VAL A 233 O ILE A 251 SHEET 3 AA512 VAL A 204 VAL A 207 1 N VAL A 207 O ILE A 230 SHEET 4 AA512 ILE A 297 GLU A 300 1 O LEU A 299 N LEU A 206 SHEET 5 AA512 MET A 319 ILE A 322 1 O VAL A 321 N GLU A 300 SHEET 6 AA512 ARG A 344 GLY A 347 1 O ARG A 344 N VAL A 320 SHEET 7 AA512 ARG B 344 GLY B 347 -1 O LEU B 345 N LEU A 345 SHEET 8 AA512 MET B 319 ILE B 322 1 N VAL B 320 O ARG B 344 SHEET 9 AA512 ILE B 297 GLU B 300 1 N GLU B 300 O VAL B 321 SHEET 10 AA512 VAL B 204 VAL B 207 1 N LEU B 206 O LEU B 299 SHEET 11 AA512 ILE B 228 VAL B 233 1 O ILE B 230 N VAL B 207 SHEET 12 AA512 GLY B 249 ASP B 252 1 O ILE B 251 N VAL B 233 SHEET 1 AA6 2 SER A 330 ASP A 334 0 SHEET 2 AA6 2 SER B 330 ASP B 334 -1 O VAL B 333 N ALA A 331 SHEET 1 AA7 2 ARG B 19 VAL B 24 0 SHEET 2 AA7 2 GLN B 38 ASP B 43 -1 O GLN B 38 N VAL B 24 SHEET 1 AA8 5 PHE B 157 TYR B 161 0 SHEET 2 AA8 5 GLU B 51 GLY B 60 -1 N VAL B 52 O ALA B 160 SHEET 3 AA8 5 ASP B 95 VAL B 103 -1 O ILE B 99 N ALA B 55 SHEET 4 AA8 5 TYR B 115 VAL B 118 -1 O VAL B 116 N GLY B 98 SHEET 5 AA8 5 ILE B 165 PRO B 167 -1 O LEU B 166 N VAL B 117 SHEET 1 AA9 4 PHE B 157 TYR B 161 0 SHEET 2 AA9 4 GLU B 51 GLY B 60 -1 N VAL B 52 O ALA B 160 SHEET 3 AA9 4 ASN B 397 LEU B 401 -1 O ILE B 400 N ALA B 59 SHEET 4 AA9 4 LEU B 372 SER B 377 1 N GLY B 373 O ASN B 397 SHEET 1 AB1 2 GLY B 121 TYR B 122 0 SHEET 2 AB1 2 GLN B 143 ILE B 144 -1 O GLN B 143 N TYR B 122 LINK OD1 ASN A 64 NA NA A 504 1555 1555 2.92 LINK OG SER A 94 NA NA A 504 1555 1555 2.68 LINK O GLY A 146 NA NA A 504 1555 1555 3.01 LINK NA NA A 504 O HOH A 688 1555 1555 3.15 CISPEP 1 VAL A 72 PRO A 73 0 1.56 CISPEP 2 VAL B 72 PRO B 73 0 6.85 CRYST1 187.990 104.310 44.810 90.00 91.59 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005319 0.000000 0.000148 0.00000 SCALE2 0.000000 0.009587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022325 0.00000 CONECT 459 6296 CONECT 683 6296 CONECT 1072 6296 CONECT 6258 6259 CONECT 6259 6258 6260 CONECT 6260 6259 6261 CONECT 6261 6260 6262 CONECT 6262 6261 6263 CONECT 6263 6262 6264 CONECT 6264 6263 6265 CONECT 6265 6264 6266 CONECT 6266 6265 6267 CONECT 6267 6266 6268 CONECT 6268 6267 6269 CONECT 6269 6268 6270 CONECT 6270 6269 6271 CONECT 6271 6270 6272 CONECT 6272 6271 6273 CONECT 6273 6272 CONECT 6274 6275 6276 CONECT 6275 6274 CONECT 6276 6274 6277 CONECT 6277 6276 6278 CONECT 6278 6277 6279 CONECT 6279 6278 6280 CONECT 6280 6279 CONECT 6281 6282 6286 6290 CONECT 6282 6281 6283 CONECT 6283 6282 6284 CONECT 6284 6283 6285 6287 CONECT 6285 6284 6286 CONECT 6286 6281 6285 CONECT 6287 6284 6288 CONECT 6288 6287 6289 CONECT 6289 6288 CONECT 6290 6281 6291 CONECT 6291 6290 6292 CONECT 6292 6291 6293 6294 6295 CONECT 6293 6292 CONECT 6294 6292 CONECT 6295 6292 CONECT 6296 459 683 1072 6407 CONECT 6297 6298 6299 6300 6301 CONECT 6298 6297 6302 CONECT 6299 6297 6303 CONECT 6300 6297 6304 CONECT 6301 6297 CONECT 6302 6298 CONECT 6303 6299 CONECT 6304 6300 CONECT 6305 6306 6310 6314 CONECT 6306 6305 6307 CONECT 6307 6306 6308 CONECT 6308 6307 6309 6311 CONECT 6309 6308 6310 CONECT 6310 6305 6309 CONECT 6311 6308 6312 CONECT 6312 6311 6313 CONECT 6313 6312 CONECT 6314 6305 6315 CONECT 6315 6314 6316 CONECT 6316 6315 6317 6318 6319 CONECT 6317 6316 CONECT 6318 6316 CONECT 6319 6316 CONECT 6407 6296 MASTER 384 0 6 31 41 0 0 6 6751 2 66 64 END