HEADER VIRAL PROTEIN/IMMUNE SYSTEM 05-DEC-24 9KVK TITLE CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE PROTEIN IN COMPLEX WITH THREE- TITLE 2 NAB 8H12, 3E2 AND 1C4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN OF NAB 3E2; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: HEAVY CHAIN OF NAB 3E2; COMPND 6 CHAIN: H; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: LIGHT CHAIN OF NAB 8H12; COMPND 9 CHAIN: B; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: HEAVY CHAIN OF NAB 8H12; COMPND 12 CHAIN: A; COMPND 13 MOL_ID: 5; COMPND 14 MOLECULE: SPIKE PROTEIN S1; COMPND 15 CHAIN: G; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 6; COMPND 18 MOLECULE: LIGHT CHAIN OF NAB 8H12; COMPND 19 CHAIN: D; COMPND 20 MOL_ID: 7; COMPND 21 MOLECULE: HEAVY CHAIN OF NAB 8H12; COMPND 22 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 MOL_ID: 5; SOURCE 14 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 15 2; SOURCE 16 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 17 ORGANISM_TAXID: 2697049; SOURCE 18 GENE: S, 2; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 21 MOL_ID: 6; SOURCE 22 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 23 ORGANISM_TAXID: 10090; SOURCE 24 MOL_ID: 7; SOURCE 25 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 26 ORGANISM_TAXID: 10090 KEYWDS SARS-COV-2, NEUTRALIZING ANTIBODY, CRYO-EM, VIRAL PROTEIN/IMMUNE KEYWDS 2 SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR H.SUN,Y.JIANG,S.LI,Q.ZHENG REVDAT 1 10-DEC-25 9KVK 0 JRNL AUTH H.SUN,Y.JIANG,S.LI,Q.ZHENG JRNL TITL CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE PROTEIN IN COMPLEX JRNL TITL 2 WITH THREE-NAB 8H12, 3E2 AND 1C4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.440 REMARK 3 NUMBER OF PARTICLES : 90363 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9KVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 10-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300049864. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF SARS-COV-2 REMARK 245 WT SPIKE PROTEIN IN COMPLEX REMARK 245 WITH THREE-NAB 8H12, 3E2 AND REMARK 245 1C4; SARS-COV-2 WT SPIKE REMARK 245 PROTEIN; NABS 8H12, 3E2 AND 1C4 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, B, A, G, D, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 83 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 50 -10.88 66.05 REMARK 500 SER L 51 -17.43 -140.72 REMARK 500 SER L 59 50.31 -93.16 REMARK 500 SER L 92 -38.45 -132.63 REMARK 500 TRP L 93 -1.01 63.49 REMARK 500 ARG B 30 -71.90 -78.38 REMARK 500 GLN B 42 -169.68 -127.84 REMARK 500 ALA B 51 -7.11 67.50 REMARK 500 ALA A 32 117.86 -163.32 REMARK 500 GLU A 46 -167.67 -125.61 REMARK 500 VAL A 48 -61.73 -103.79 REMARK 500 ASP A 92 32.72 -94.92 REMARK 500 PRO G 337 78.77 -67.99 REMARK 500 ASP G 389 49.79 -94.03 REMARK 500 GLN G 474 66.77 60.09 REMARK 500 TYR G 489 71.76 58.59 REMARK 500 ALA D 51 -7.02 67.32 REMARK 500 SER D 91 10.02 -140.93 REMARK 500 PHE C 64 57.72 -97.30 REMARK 500 ARG C 67 -3.07 68.51 REMARK 500 ASP C 90 33.10 -95.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS G 361 VAL G 362 140.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-62597 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF SARS-COV-2 SPIKE PROTEIN IN COMPLEX WITH THREE- REMARK 900 NAB 8H12, 3E2 AND 1C4 DBREF 9KVK L 1 104 PDB 9KVK 9KVK 1 104 DBREF 9KVK H 1 121 PDB 9KVK 9KVK 1 121 DBREF 9KVK B 1 107 PDB 9KVK 9KVK 1 107 DBREF 9KVK A 1 118 PDB 9KVK 9KVK 1 118 DBREF 9KVK G 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 DBREF 9KVK D 1 107 PDB 9KVK 9KVK 1 107 DBREF 9KVK C 1 119 PDB 9KVK 9KVK 1 119 SEQRES 1 L 104 GLN ILE VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 L 104 SER LEU GLY GLU GLU ILE THR LEU THR CYS SER VAL SER SEQRES 3 L 104 SER SER VAL SER ASP MET HIS TRP TYR GLN GLN LYS SER SEQRES 4 L 104 GLY THR SER PRO LYS VAL PHE ILE TYR SER THR SER ASN SEQRES 5 L 104 LEU ALA SER GLY VAL PRO SER ARG PHE SER GLY SER GLY SEQRES 6 L 104 SER GLY THR PHE TYR SER LEU THR ILE SER SER VAL GLU SEQRES 7 L 104 ALA GLU ASP ALA ALA TYR TYR TYR CYS HIS GLN TRP SER SEQRES 8 L 104 SER TRP THR PHE GLY GLY GLY THR LYS LEU GLU ILE LYS SEQRES 1 H 121 GLU VAL MET LEU VAL GLU SER GLY GLY GLY VAL VAL LYS SEQRES 2 H 121 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 121 PHE SER PHE SER THR TYR ALA MET SER TRP ILE ARG GLN SEQRES 4 H 121 THR PRO GLU LYS SER LEU GLU TRP VAL ALA ALA ILE SER SEQRES 5 H 121 SER GLY GLY THR ASN THR TYR TYR PRO GLY SER VAL LYS SEQRES 6 H 121 GLY ARG PHE THR ILE SER ARG ASP LYS ALA MET ASN THR SEQRES 7 H 121 LEU TYR LEU GLN LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 121 ALA MET TYR TYR CYS VAL ARG HIS SER GLY ASN TYR VAL SEQRES 9 H 121 ASP SER VAL MET ASP TYR TRP GLY GLN GLY THR SER VAL SEQRES 10 H 121 THR VAL SER SER SEQRES 1 B 107 ASP ILE VAL MET THR GLN PHE GLN LYS PHE MET SER THR SEQRES 2 B 107 SER VAL GLY ASP ARG VAL SER ILE THR CYS LYS ALA SER SEQRES 3 B 107 GLN ASN VAL ARG THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 B 107 PRO GLY GLN SER PRO LYS ALA MET ILE TYR LEU ALA SER SEQRES 5 B 107 ASN ARG HIS ARG GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 B 107 GLY CYS GLY THR ASP PHE THR LEU THR ILE SER ASN VAL SEQRES 7 B 107 GLN CYS GLU ASP LEU ALA ASP TYR PHE CYS LEU GLN HIS SEQRES 8 B 107 ARG ASN TYR PRO LEU THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 B 107 GLU ILE LYS SEQRES 1 A 118 GLU VAL LYS LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 118 PRO GLY GLY SER MET LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 A 118 PHE THR PHE SER ASP ALA TRP MET ASP TRP VAL ARG GLN SEQRES 4 A 118 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLN ILE ARG SEQRES 5 A 118 ARG LYS ALA ASN ASN HIS ALA THR TYR TYR ALA GLU SER SEQRES 6 A 118 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 A 118 SER SER VAL TYR LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 A 118 ASP THR GLY ILE TYR TYR CYS ILE ARG GLY MET THR TYR SEQRES 9 A 118 ALA MET ASP PHE TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 A 118 SER SEQRES 1 G 194 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 G 194 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 G 194 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 G 194 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 G 194 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 G 194 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 G 194 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 G 194 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 G 194 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 G 194 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 G 194 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 G 194 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 G 194 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 G 194 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 G 194 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 1 D 107 ASP ILE VAL LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 D 107 THR PRO GLY ASP ASN VAL SER LEU SER CYS ARG ALA SER SEQRES 3 D 107 GLN ILE ILE SER ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 D 107 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 D 107 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 D 107 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 D 107 GLU THR GLU ASP PHE GLY MET TYR PHE CYS GLN GLN SER SEQRES 8 D 107 ASN THR TRP PRO LEU THR CYS GLY SER GLY THR LYS LEU SEQRES 9 D 107 GLU LEU ASN SEQRES 1 C 119 GLN ILE GLN LEU VAL GLN SER GLY PRO GLU LEU LYS LYS SEQRES 2 C 119 PRO GLY GLU THR VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 C 119 TYR THR PHE THR ASP TYR GLY LEU ASN TRP VAL LYS GLN SEQRES 4 C 119 ALA PRO GLY LYS GLY LEU LYS TRP MET GLY TRP ILE ASN SEQRES 5 C 119 THR TYR SER GLY GLU PRO THR TYR ASN ASP GLU PHE ARG SEQRES 6 C 119 GLY ARG PHE ALA PHE SER LEU GLU THR SER THR ILE THR SEQRES 7 C 119 ALA TYR LEU LYS ILE ASN ASN LEU LYS ASN GLU ASP THR SEQRES 8 C 119 ALA THR TYR PHE CYS ALA ARG GLY GLY ASN TRP ASP TRP SEQRES 9 C 119 TYR PHE ASP VAL TRP GLY ALA GLY THR THR VAL THR VAL SEQRES 10 C 119 SER SER HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 8 NAG 2(C8 H15 N O6) FORMUL 8 BMA C6 H12 O6 HELIX 1 AA1 SER H 28 TYR H 32 5 5 HELIX 2 AA2 ARG H 87 THR H 91 5 5 HELIX 3 AA3 ARG A 53 ASN A 57 5 5 HELIX 4 AA4 SER G 349 TRP G 353 5 5 HELIX 5 AA5 TYR G 365 ASN G 370 1 6 HELIX 6 AA6 SER G 383 LEU G 387 5 5 HELIX 7 AA7 ASP G 405 ILE G 410 5 6 HELIX 8 AA8 THR C 28 TYR C 32 5 5 SHEET 1 AA1 4 LEU L 4 THR L 5 0 SHEET 2 AA1 4 ILE L 19 VAL L 29 -1 O SER L 24 N THR L 5 SHEET 3 AA1 4 GLY L 67 ILE L 74 -1 O LEU L 72 N LEU L 21 SHEET 4 AA1 4 PHE L 61 SER L 64 -1 N SER L 62 O THR L 73 SHEET 1 AA2 6 ILE L 10 SER L 12 0 SHEET 2 AA2 6 THR L 99 GLU L 102 1 O LYS L 100 N MET L 11 SHEET 3 AA2 6 TYR L 84 HIS L 88 -1 N TYR L 85 O THR L 99 SHEET 4 AA2 6 HIS L 33 GLN L 37 -1 N TYR L 35 O TYR L 86 SHEET 5 AA2 6 LYS L 44 TYR L 48 -1 O ILE L 47 N TRP L 34 SHEET 6 AA2 6 ASN L 52 LEU L 53 -1 O ASN L 52 N TYR L 48 SHEET 1 AA3 2 MET H 3 VAL H 5 0 SHEET 2 AA3 2 ALA H 23 SER H 25 -1 O SER H 25 N MET H 3 SHEET 1 AA4 6 VAL H 11 VAL H 12 0 SHEET 2 AA4 6 THR H 115 VAL H 119 1 O THR H 118 N VAL H 12 SHEET 3 AA4 6 ALA H 92 ARG H 98 -1 N TYR H 94 O THR H 115 SHEET 4 AA4 6 MET H 34 THR H 40 -1 N ILE H 37 O TYR H 95 SHEET 5 AA4 6 SER H 44 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA4 6 THR H 58 TYR H 59 -1 O TYR H 59 N ALA H 50 SHEET 1 AA5 3 SER H 17 SER H 21 0 SHEET 2 AA5 3 LEU H 79 SER H 84 -1 O LEU H 83 N LEU H 18 SHEET 3 AA5 3 PHE H 68 ARG H 72 -1 N SER H 71 O TYR H 80 SHEET 1 AA6 4 MET B 4 THR B 5 0 SHEET 2 AA6 4 VAL B 19 VAL B 29 -1 O LYS B 24 N THR B 5 SHEET 3 AA6 4 GLY B 68 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 AA6 4 THR B 63 SER B 65 -1 N SER B 65 O THR B 72 SHEET 1 AA7 2 PHE B 10 THR B 13 0 SHEET 2 AA7 2 LYS B 103 ILE B 106 1 O GLU B 105 N THR B 13 SHEET 1 AA8 4 ASN B 53 ARG B 54 0 SHEET 2 AA8 4 LYS B 45 TYR B 49 -1 N TYR B 49 O ASN B 53 SHEET 3 AA8 4 VAL B 33 GLN B 38 -1 N GLN B 37 O LYS B 45 SHEET 4 AA8 4 ASP B 85 GLN B 90 -1 O LEU B 89 N ALA B 34 SHEET 1 AA9 4 LYS A 3 LEU A 4 0 SHEET 2 AA9 4 MET A 18 SER A 25 -1 O SER A 25 N LYS A 3 SHEET 3 AA9 4 SER A 80 MET A 85 -1 O LEU A 83 N LEU A 20 SHEET 4 AA9 4 PHE A 70 ASP A 75 -1 N THR A 71 O GLN A 84 SHEET 1 AB1 2 GLY A 10 VAL A 12 0 SHEET 2 AB1 2 VAL A 115 VAL A 117 1 O THR A 116 N VAL A 12 SHEET 1 AB2 4 GLY A 44 LEU A 45 0 SHEET 2 AB2 4 MET A 34 SER A 40 -1 N SER A 40 O GLY A 44 SHEET 3 AB2 4 ALA A 49 ILE A 51 -1 O ILE A 51 N MET A 34 SHEET 4 AB2 4 THR A 60 TYR A 62 -1 O TYR A 61 N GLN A 50 SHEET 1 AB3 3 GLY A 44 LEU A 45 0 SHEET 2 AB3 3 MET A 34 SER A 40 -1 N SER A 40 O GLY A 44 SHEET 3 AB3 3 ILE A 95 ILE A 99 -1 O TYR A 97 N VAL A 37 SHEET 1 AB4 4 THR G 376 CYS G 379 0 SHEET 2 AB4 4 GLY G 431 ASN G 437 -1 O VAL G 433 N LYS G 378 SHEET 3 AB4 4 PRO G 507 GLU G 516 -1 O VAL G 511 N ILE G 434 SHEET 4 AB4 4 ASN G 394 ARG G 403 -1 N ILE G 402 O TYR G 508 SHEET 1 AB5 2 LEU G 452 ARG G 454 0 SHEET 2 AB5 2 LEU G 492 SER G 494 -1 O GLN G 493 N TYR G 453 SHEET 1 AB6 4 THR D 5 GLN D 6 0 SHEET 2 AB6 4 VAL D 19 ARG D 24 -1 O ARG D 24 N THR D 5 SHEET 3 AB6 4 ASP D 70 ILE D 75 -1 O LEU D 73 N LEU D 21 SHEET 4 AB6 4 PHE D 62 SER D 65 -1 N SER D 65 O THR D 72 SHEET 1 AB7 3 THR D 10 VAL D 13 0 SHEET 2 AB7 3 THR D 102 LEU D 106 1 O LYS D 103 N LEU D 11 SHEET 3 AB7 3 GLY D 84 TYR D 86 -1 N GLY D 84 O LEU D 104 SHEET 1 AB8 3 ARG D 45 ILE D 48 0 SHEET 2 AB8 3 LEU D 33 GLN D 37 -1 N TRP D 35 O LEU D 47 SHEET 3 AB8 3 CYS D 88 GLN D 90 -1 O GLN D 89 N HIS D 34 SHEET 1 AB9 2 GLN C 3 GLN C 6 0 SHEET 2 AB9 2 CYS C 22 SER C 25 -1 O LYS C 23 N VAL C 5 SHEET 1 AC1 2 LEU C 11 LYS C 12 0 SHEET 2 AC1 2 THR C 116 VAL C 117 1 O THR C 116 N LYS C 12 SHEET 1 AC2 3 VAL C 18 ILE C 20 0 SHEET 2 AC2 3 LEU C 81 ILE C 83 -1 O LEU C 81 N ILE C 20 SHEET 3 AC2 3 PHE C 68 ALA C 69 -1 N ALA C 69 O LYS C 82 SHEET 1 AC3 4 PRO C 58 TYR C 60 0 SHEET 2 AC3 4 LYS C 46 ILE C 51 -1 N TRP C 50 O THR C 59 SHEET 3 AC3 4 LEU C 34 GLN C 39 -1 N TRP C 36 O MET C 48 SHEET 4 AC3 4 THR C 93 ALA C 97 -1 O ALA C 97 N ASN C 35 SHEET 1 AC4 2 LEU C 72 GLU C 73 0 SHEET 2 AC4 2 THR C 78 ALA C 79 -1 O THR C 78 N GLU C 73 SSBOND 1 CYS L 23 CYS L 87 1555 1555 2.03 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.04 SSBOND 4 CYS A 22 CYS A 98 1555 1555 2.03 SSBOND 5 CYS G 336 CYS G 361 1555 1555 2.03 SSBOND 6 CYS G 379 CYS G 432 1555 1555 2.03 SSBOND 7 CYS G 391 CYS G 525 1555 1555 2.03 SSBOND 8 CYS G 480 CYS G 488 1555 1555 2.03 SSBOND 9 CYS D 23 CYS D 88 1555 1555 2.04 SSBOND 10 CYS C 22 CYS C 96 1555 1555 2.03 LINK ND2 ASN G 343 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 CISPEP 1 SER L 7 PRO L 8 0 -8.29 CISPEP 2 SER D 7 PRO D 8 0 -4.54 CISPEP 3 TRP D 94 PRO D 95 0 -5.67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 789 LYS L 104 TER 1708 SER H 121 TER 2545 LYS B 107 TER 3468 SER A 118 TER 5005 GLY G 526 TER 5823 ASN D 107 TER 6771 SER C 119 HETATM 6772 C1 NAG E 1 237.165 175.402 198.982 1.00182.92 C HETATM 6773 C2 NAG E 1 237.299 176.262 200.249 1.00182.92 C HETATM 6774 C3 NAG E 1 238.778 176.473 200.607 1.00182.92 C HETATM 6775 C4 NAG E 1 239.564 175.167 200.601 1.00182.92 C HETATM 6776 C5 NAG E 1 239.326 174.434 199.281 1.00182.92 C HETATM 6777 C6 NAG E 1 239.978 173.074 199.192 1.00182.92 C HETATM 6778 C7 NAG E 1 235.814 178.131 200.928 1.00182.92 C HETATM 6779 C8 NAG E 1 235.541 177.382 202.202 1.00182.92 C HETATM 6780 N2 NAG E 1 236.646 177.548 200.053 1.00182.92 N HETATM 6781 O3 NAG E 1 238.865 177.079 201.891 1.00182.92 O HETATM 6782 O4 NAG E 1 240.945 175.480 200.758 1.00182.92 O HETATM 6783 O5 NAG E 1 237.920 174.215 199.124 1.00182.92 O HETATM 6784 O6 NAG E 1 240.090 172.626 197.848 1.00182.92 O HETATM 6785 O7 NAG E 1 235.299 179.219 200.697 1.00182.92 O HETATM 6786 C1 NAG E 2 241.544 174.836 201.921 1.00195.05 C HETATM 6787 C2 NAG E 2 243.044 175.096 201.851 1.00195.05 C HETATM 6788 C3 NAG E 2 243.747 174.383 202.998 1.00195.05 C HETATM 6789 C4 NAG E 2 243.122 174.754 204.343 1.00195.05 C HETATM 6790 C5 NAG E 2 241.597 174.598 204.309 1.00195.05 C HETATM 6791 C6 NAG E 2 240.922 175.139 205.547 1.00195.05 C HETATM 6792 C7 NAG E 2 244.166 175.523 199.712 1.00195.05 C HETATM 6793 C8 NAG E 2 244.681 174.922 198.440 1.00195.05 C HETATM 6794 N2 NAG E 2 243.593 174.675 200.573 1.00195.05 N HETATM 6795 O3 NAG E 2 245.128 174.726 202.962 1.00195.05 O HETATM 6796 O4 NAG E 2 243.618 173.884 205.357 1.00195.05 O HETATM 6797 O5 NAG E 2 241.034 175.301 203.189 1.00195.05 O HETATM 6798 O6 NAG E 2 241.325 176.476 205.814 1.00195.05 O HETATM 6799 O7 NAG E 2 244.261 176.722 199.951 1.00195.05 O HETATM 6800 C1 BMA E 3 244.624 174.518 206.174 1.00204.53 C HETATM 6801 C2 BMA E 3 244.456 174.018 207.626 1.00204.53 C HETATM 6802 C3 BMA E 3 245.640 174.480 208.487 1.00204.53 C HETATM 6803 C4 BMA E 3 246.987 174.134 207.834 1.00204.53 C HETATM 6804 C5 BMA E 3 247.036 174.756 206.431 1.00204.53 C HETATM 6805 C6 BMA E 3 248.323 174.438 205.689 1.00204.53 C HETATM 6806 O2 BMA E 3 244.452 172.600 207.671 1.00204.53 O HETATM 6807 O3 BMA E 3 245.582 173.928 209.794 1.00204.53 O HETATM 6808 O4 BMA E 3 248.053 174.646 208.613 1.00204.53 O HETATM 6809 O5 BMA E 3 245.932 174.227 205.664 1.00204.53 O HETATM 6810 O6 BMA E 3 248.568 175.472 204.739 1.00204.53 O CONECT 165 648 CONECT 648 165 CONECT 936 1515 CONECT 1515 936 CONECT 1886 2390 CONECT 2390 1886 CONECT 2696 3313 CONECT 3313 2696 CONECT 3497 3704 CONECT 3554 6772 CONECT 3704 3497 CONECT 3844 4257 CONECT 3934 5000 CONECT 4257 3844 CONECT 4648 4705 CONECT 4705 4648 CONECT 5000 3934 CONECT 5165 5677 CONECT 5677 5165 CONECT 5988 6589 CONECT 6589 5988 CONECT 6772 3554 6773 6783 CONECT 6773 6772 6774 6780 CONECT 6774 6773 6775 6781 CONECT 6775 6774 6776 6782 CONECT 6776 6775 6777 6783 CONECT 6777 6776 6784 CONECT 6778 6779 6780 6785 CONECT 6779 6778 CONECT 6780 6773 6778 CONECT 6781 6774 CONECT 6782 6775 6786 CONECT 6783 6772 6776 CONECT 6784 6777 CONECT 6785 6778 CONECT 6786 6782 6787 6797 CONECT 6787 6786 6788 6794 CONECT 6788 6787 6789 6795 CONECT 6789 6788 6790 6796 CONECT 6790 6789 6791 6797 CONECT 6791 6790 6798 CONECT 6792 6793 6794 6799 CONECT 6793 6792 CONECT 6794 6787 6792 CONECT 6795 6788 CONECT 6796 6789 6800 CONECT 6797 6786 6790 CONECT 6798 6791 CONECT 6799 6792 CONECT 6800 6796 6801 6809 CONECT 6801 6800 6802 6806 CONECT 6802 6801 6803 6807 CONECT 6803 6802 6804 6808 CONECT 6804 6803 6805 6809 CONECT 6805 6804 6810 CONECT 6806 6801 CONECT 6807 6802 CONECT 6808 6803 CONECT 6809 6800 6804 CONECT 6810 6805 MASTER 171 0 3 8 73 0 0 6 6803 7 60 71 END