HEADER VIRAL PROTEIN/IMMUNE SYSTEM 05-DEC-24 9KVT TITLE CRYO-EM STRUCTURE OF SARS-COV-2 BA.2 SPIKE PROTEIN IN COMPLEX WITH TITLE 2 TRIPLE-NAB 8H12, 3E2 AND 1C4 (LOCAL REFINEMENT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THE LIGHT CHAIN OF 3E2; COMPND 3 CHAIN: L; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: THE HEAVY CHAIN OF 3E2; COMPND 6 CHAIN: H; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: THE LIGHT CHAIN OF 8H12; COMPND 9 CHAIN: B; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: THE HEAVY CHAIN OF 8H12; COMPND 12 CHAIN: A; COMPND 13 MOL_ID: 5; COMPND 14 MOLECULE: SPIKE PROTEIN S1; COMPND 15 CHAIN: G; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 6; COMPND 18 MOLECULE: THE LIGHT CHAIN OF 1C4; COMPND 19 CHAIN: D; COMPND 20 MOL_ID: 7; COMPND 21 MOLECULE: THE HEAVY CHAIN OF 1C4; COMPND 22 CHAIN: C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 6 ORGANISM_TAXID: 10090; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 MOL_ID: 5; SOURCE 14 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 15 2; SOURCE 16 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 17 ORGANISM_TAXID: 2697049; SOURCE 18 STRAIN: BA.2, OMICRON; SOURCE 19 GENE: S, 2; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 MOL_ID: 6; SOURCE 23 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 24 ORGANISM_TAXID: 10090; SOURCE 25 MOL_ID: 7; SOURCE 26 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 27 ORGANISM_TAXID: 10090 KEYWDS SARS-COV-2, NEUTRALIZING ANTIBODY, CRYO-EM, VIRAL PROTEIN/IMMUNE KEYWDS 2 SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR H.SUN,Y.JIANG,S.LI,Q.ZHENG REVDAT 1 10-DEC-25 9KVT 0 JRNL AUTH H.SUN,Y.JIANG,S.LI,Q.ZHENG JRNL TITL CRYO-EM STRUCTURE OF SARS-COV-2 BA.2 SPIKE PROTEIN IN JRNL TITL 2 COMPLEX WITH TRIPLE-NAB 8H12, 3E2 AND 1C4 (LOCAL REFINEMENT) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.900 REMARK 3 NUMBER OF PARTICLES : 316199 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9KVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 10-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300049866. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SARS-COV-2 BA.2 SPIKE PROTEIN REMARK 245 IN COMPLEX WITH TRIPLE-NAB 8H12, REMARK 245 3E2 AND 1C4; SARS-COV-2 BA.2 REMARK 245 SPIKE PROTEIN; NABS 8H12, 3E2 REMARK 245 AND 1C4 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TECNAI F30 REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 900.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, B, A, G, D, C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU G 518 CA - CB - CG ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 50 -0.24 62.87 REMARK 500 SER L 59 49.68 -92.24 REMARK 500 SER H 52 -167.69 -78.14 REMARK 500 SER H 106 -169.26 -78.62 REMARK 500 ALA B 25 -167.75 -114.43 REMARK 500 GLN B 27 -159.96 -148.97 REMARK 500 ALA B 51 -6.51 67.55 REMARK 500 ALA A 32 142.46 -171.25 REMARK 500 VAL A 48 -63.50 -98.40 REMARK 500 PHE G 342 -63.24 -99.11 REMARK 500 ASN G 343 51.80 -93.19 REMARK 500 PRO G 373 20.71 -78.19 REMARK 500 SER G 408 29.05 -65.69 REMARK 500 ASN G 422 -52.60 -121.21 REMARK 500 HIS G 519 50.44 39.37 REMARK 500 CYS G 525 -165.91 -164.74 REMARK 500 ALA D 51 -7.36 71.27 REMARK 500 SER D 52 -30.29 -136.47 REMARK 500 SER D 63 114.56 -160.53 REMARK 500 ARG C 67 -2.56 67.74 REMARK 500 ASP C 90 36.06 -96.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS G 361 VAL G 362 132.68 REMARK 500 LEU G 518 HIS G 519 149.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-62601 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF SARS-COV-2 BA.2 SPIKE PROTEIN IN COMPLEX WITH REMARK 900 TRIPLE-NAB 8H12, 3E2 AND 1C4 (LOCAL REFINEMENT) DBREF 9KVT L 1 104 PDB 9KVT 9KVT 1 104 DBREF 9KVT H 1 121 PDB 9KVT 9KVT 1 121 DBREF 9KVT B 1 107 PDB 9KVT 9KVT 1 107 DBREF 9KVT A 1 119 PDB 9KVT 9KVT 1 119 DBREF 9KVT G 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 DBREF 9KVT D 1 107 PDB 9KVT 9KVT 1 107 DBREF 9KVT C 1 119 PDB 9KVT 9KVT 1 119 SEQADV 9KVT ASP G 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 9KVT LEU G 371 UNP P0DTC2 SER 371 VARIANT SEQADV 9KVT PRO G 373 UNP P0DTC2 SER 373 VARIANT SEQADV 9KVT PHE G 375 UNP P0DTC2 SER 375 VARIANT SEQADV 9KVT ALA G 376 UNP P0DTC2 THR 376 VARIANT SEQADV 9KVT ASN G 405 UNP P0DTC2 ASP 405 VARIANT SEQADV 9KVT SER G 408 UNP P0DTC2 ARG 408 VARIANT SEQADV 9KVT ASN G 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 9KVT LYS G 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 9KVT ASN G 477 UNP P0DTC2 SER 477 VARIANT SEQADV 9KVT LYS G 478 UNP P0DTC2 THR 478 VARIANT SEQADV 9KVT ALA G 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 9KVT ARG G 493 UNP P0DTC2 GLN 493 VARIANT SEQADV 9KVT ARG G 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 9KVT TYR G 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 9KVT HIS G 505 UNP P0DTC2 TYR 505 VARIANT SEQRES 1 L 104 GLN ILE VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 L 104 SER LEU GLY GLU GLU ILE THR LEU THR CYS SER VAL SER SEQRES 3 L 104 SER SER VAL SER ASP MET HIS TRP TYR GLN GLN LYS SER SEQRES 4 L 104 GLY THR SER PRO LYS VAL PHE ILE TYR SER THR SER ASN SEQRES 5 L 104 LEU ALA SER GLY VAL PRO SER ARG PHE SER GLY SER GLY SEQRES 6 L 104 SER GLY THR PHE TYR SER LEU THR ILE SER SER VAL GLU SEQRES 7 L 104 ALA GLU ASP ALA ALA TYR TYR TYR CYS HIS GLN TRP SER SEQRES 8 L 104 SER TRP THR PHE GLY GLY GLY THR LYS LEU GLU ILE LYS SEQRES 1 H 121 GLU VAL MET LEU VAL GLU SER GLY GLY GLY VAL VAL LYS SEQRES 2 H 121 PRO GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 121 PHE SER PHE SER THR TYR ALA MET SER TRP ILE ARG GLN SEQRES 4 H 121 THR PRO GLU LYS SER LEU GLU TRP VAL ALA ALA ILE SER SEQRES 5 H 121 SER GLY GLY THR ASN THR TYR TYR PRO GLY SER VAL LYS SEQRES 6 H 121 GLY ARG PHE THR ILE SER ARG ASP LYS ALA MET ASN THR SEQRES 7 H 121 LEU TYR LEU GLN LEU SER SER LEU ARG SER GLU ASP THR SEQRES 8 H 121 ALA MET TYR TYR CYS VAL ARG HIS SER GLY ASN TYR VAL SEQRES 9 H 121 ASP SER VAL MET ASP TYR TRP GLY GLN GLY THR SER VAL SEQRES 10 H 121 THR VAL SER SER SEQRES 1 B 107 ASP ILE VAL MET THR GLN PHE GLN LYS PHE MET SER THR SEQRES 2 B 107 SER VAL GLY ASP ARG VAL SER ILE THR CYS LYS ALA SER SEQRES 3 B 107 GLN ASN VAL ARG THR ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 B 107 PRO GLY GLN SER PRO LYS ALA MET ILE TYR LEU ALA SER SEQRES 5 B 107 ASN ARG HIS ARG GLY VAL PRO ASP ARG PHE THR GLY SER SEQRES 6 B 107 GLY CYS GLY THR ASP PHE THR LEU THR ILE SER ASN VAL SEQRES 7 B 107 GLN CYS GLU ASP LEU ALA ASP TYR PHE CYS LEU GLN HIS SEQRES 8 B 107 ARG ASN TYR PRO LEU THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 B 107 GLU ILE LYS SEQRES 1 A 119 GLU VAL LYS LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 119 PRO GLY GLY SER MET LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 A 119 PHE THR PHE SER ASP ALA TRP MET ASP TRP VAL ARG GLN SEQRES 4 A 119 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLN ILE ARG SEQRES 5 A 119 ARG LYS ALA ASN ASN HIS ALA THR TYR TYR ALA GLU SER SEQRES 6 A 119 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 A 119 SER SER VAL TYR LEU GLN MET ASN SER LEU ARG ALA GLU SEQRES 8 A 119 ASP THR GLY ILE TYR TYR CYS ILE ARG GLY MET THR TYR SEQRES 9 A 119 ALA MET ASP PHE TRP GLY GLN GLY THR SER VAL THR VAL SEQRES 10 A 119 SER SER SEQRES 1 G 194 THR ASN LEU CYS PRO PHE ASP GLU VAL PHE ASN ALA THR SEQRES 2 G 194 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 G 194 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN LEU SEQRES 4 G 194 ALA PRO PHE PHE ALA PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 G 194 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 G 194 ASP SER PHE VAL ILE ARG GLY ASN GLU VAL SER GLN ILE SEQRES 7 G 194 ALA PRO GLY GLN THR GLY ASN ILE ALA ASP TYR ASN TYR SEQRES 8 G 194 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 G 194 ASN SER ASN LYS LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 G 194 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 G 194 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 G 194 GLY ASN LYS PRO CYS ASN GLY VAL ALA GLY PHE ASN CYS SEQRES 13 G 194 TYR PHE PRO LEU ARG SER TYR GLY PHE ARG PRO THR TYR SEQRES 14 G 194 GLY VAL GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 G 194 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 1 D 107 ASP ILE VAL LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 D 107 THR PRO GLY ASP ASN VAL SER LEU SER CYS ARG ALA SER SEQRES 3 D 107 GLN ILE ILE SER ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 D 107 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR ALA SER SEQRES 5 D 107 GLN SER ILE SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 D 107 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 D 107 GLU THR GLU ASP PHE GLY MET TYR PHE CYS GLN GLN SER SEQRES 8 D 107 ASN THR TRP PRO LEU THR CYS GLY SER GLY THR LYS LEU SEQRES 9 D 107 GLU LEU ASN SEQRES 1 C 119 GLN ILE GLN LEU VAL GLN SER GLY PRO GLU LEU LYS LYS SEQRES 2 C 119 PRO GLY GLU THR VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 C 119 TYR THR PHE THR ASP TYR GLY LEU ASN TRP VAL LYS GLN SEQRES 4 C 119 ALA PRO GLY LYS GLY LEU LYS TRP MET GLY TRP ILE ASN SEQRES 5 C 119 THR TYR SER GLY GLU PRO THR TYR ASN ASP GLU PHE ARG SEQRES 6 C 119 GLY ARG PHE ALA PHE SER LEU GLU THR SER THR ILE THR SEQRES 7 C 119 ALA TYR LEU LYS ILE ASN ASN LEU LYS ASN GLU ASP THR SEQRES 8 C 119 ALA THR TYR PHE CYS ALA ARG GLY GLY ASN TRP ASP TRP SEQRES 9 C 119 TYR PHE ASP VAL TRP GLY ALA GLY THR THR VAL THR VAL SEQRES 10 C 119 SER SER HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 8 NAG 2(C8 H15 N O6) FORMUL 8 BMA C6 H12 O6 HELIX 1 AA1 SER H 28 TYR H 32 5 5 HELIX 2 AA2 GLU A 64 LYS A 67 5 4 HELIX 3 AA3 SER G 349 TRP G 353 5 5 HELIX 4 AA4 ASP G 364 LEU G 368 5 5 HELIX 5 AA5 ASN G 405 ILE G 410 5 6 HELIX 6 AA6 ASN G 417 ASN G 422 1 6 HELIX 7 AA7 GLU D 79 PHE D 83 5 5 HELIX 8 AA8 THR C 28 TYR C 32 5 5 SHEET 1 AA1 4 LEU L 4 THR L 5 0 SHEET 2 AA1 4 ILE L 19 VAL L 29 -1 O SER L 24 N THR L 5 SHEET 3 AA1 4 GLY L 67 ILE L 74 -1 O ILE L 74 N ILE L 19 SHEET 4 AA1 4 PHE L 61 SER L 64 -1 N SER L 62 O THR L 73 SHEET 1 AA2 2 ILE L 10 SER L 12 0 SHEET 2 AA2 2 LYS L 100 GLU L 102 1 O LYS L 100 N MET L 11 SHEET 1 AA3 3 LYS L 44 ILE L 47 0 SHEET 2 AA3 3 HIS L 33 GLN L 37 -1 N GLN L 36 O LYS L 44 SHEET 3 AA3 3 TYR L 84 HIS L 88 -1 O TYR L 86 N TYR L 35 SHEET 1 AA4 4 MET H 3 SER H 7 0 SHEET 2 AA4 4 LYS H 19 SER H 25 -1 O ALA H 23 N VAL H 5 SHEET 3 AA4 4 THR H 78 LEU H 83 -1 O LEU H 81 N LEU H 20 SHEET 4 AA4 4 PHE H 68 SER H 71 -1 N THR H 69 O GLN H 82 SHEET 1 AA5 6 GLY H 10 VAL H 11 0 SHEET 2 AA5 6 SER H 116 THR H 118 1 O THR H 118 N GLY H 10 SHEET 3 AA5 6 ALA H 92 HIS H 99 -1 N ALA H 92 O VAL H 117 SHEET 4 AA5 6 MET H 34 GLN H 39 -1 N ILE H 37 O TYR H 95 SHEET 5 AA5 6 LEU H 45 ILE H 51 -1 O ILE H 51 N MET H 34 SHEET 6 AA5 6 THR H 58 TYR H 59 -1 O TYR H 59 N ALA H 50 SHEET 1 AA6 4 GLY H 10 VAL H 11 0 SHEET 2 AA6 4 SER H 116 THR H 118 1 O THR H 118 N GLY H 10 SHEET 3 AA6 4 ALA H 92 HIS H 99 -1 N ALA H 92 O VAL H 117 SHEET 4 AA6 4 MET H 108 TYR H 110 -1 O TYR H 110 N ARG H 98 SHEET 1 AA7 2 PHE B 10 MET B 11 0 SHEET 2 AA7 2 LYS B 103 LEU B 104 1 O LYS B 103 N MET B 11 SHEET 1 AA8 3 ARG B 18 VAL B 29 0 SHEET 2 AA8 3 GLY B 68 SER B 76 -1 O ILE B 75 N VAL B 19 SHEET 3 AA8 3 PHE B 62 THR B 63 -1 N THR B 63 O THR B 74 SHEET 1 AA9 3 PRO B 44 ILE B 48 0 SHEET 2 AA9 3 VAL B 33 GLN B 38 -1 N GLN B 37 O LYS B 45 SHEET 3 AA9 3 ASP B 85 GLN B 90 -1 O PHE B 87 N TYR B 36 SHEET 1 AB1 4 LEU A 4 GLU A 6 0 SHEET 2 AB1 4 SER A 17 ALA A 24 -1 O ALA A 23 N GLU A 5 SHEET 3 AB1 4 SER A 80 ASN A 86 -1 O LEU A 83 N LEU A 20 SHEET 4 AB1 4 PHE A 70 ASP A 75 -1 N SER A 73 O TYR A 82 SHEET 1 AB2 6 LEU A 11 VAL A 12 0 SHEET 2 AB2 6 SER A 114 VAL A 117 1 O THR A 116 N VAL A 12 SHEET 3 AB2 6 GLY A 94 TYR A 96 -1 N GLY A 94 O VAL A 115 SHEET 4 AB2 6 ASP A 35 SER A 40 -1 N GLN A 39 O ILE A 95 SHEET 5 AB2 6 GLY A 44 GLN A 50 -1 O GLU A 46 N ARG A 38 SHEET 6 AB2 6 TYR A 61 TYR A 62 -1 O TYR A 61 N GLN A 50 SHEET 1 AB3 5 ASN G 354 ILE G 358 0 SHEET 2 AB3 5 ASN G 394 ARG G 403 -1 O VAL G 395 N ILE G 358 SHEET 3 AB3 5 PRO G 507 GLU G 516 -1 O TYR G 508 N ILE G 402 SHEET 4 AB3 5 GLY G 431 ALA G 435 -1 N ILE G 434 O VAL G 511 SHEET 5 AB3 5 ALA G 376 CYS G 379 -1 N LYS G 378 O VAL G 433 SHEET 1 AB4 2 LEU G 452 ARG G 454 0 SHEET 2 AB4 2 LEU G 492 SER G 494 -1 O ARG G 493 N TYR G 453 SHEET 1 AB5 4 THR D 5 GLN D 6 0 SHEET 2 AB5 4 CYS D 23 ILE D 29 -1 O ARG D 24 N THR D 5 SHEET 3 AB5 4 GLY D 68 ASN D 76 -1 O THR D 69 N ALA D 25 SHEET 4 AB5 4 ASN D 18 SER D 20 -1 N VAL D 19 O ILE D 75 SHEET 1 AB6 4 THR D 5 GLN D 6 0 SHEET 2 AB6 4 CYS D 23 ILE D 29 -1 O ARG D 24 N THR D 5 SHEET 3 AB6 4 GLY D 68 ASN D 76 -1 O THR D 69 N ALA D 25 SHEET 4 AB6 4 PHE D 62 SER D 65 -1 N SER D 65 O THR D 72 SHEET 1 AB7 6 THR D 10 VAL D 13 0 SHEET 2 AB7 6 THR D 102 LEU D 106 1 O GLU D 105 N VAL D 13 SHEET 3 AB7 6 GLY D 84 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 AB7 6 LEU D 33 GLN D 38 -1 N TYR D 36 O PHE D 87 SHEET 5 AB7 6 ARG D 45 LYS D 49 -1 O LEU D 47 N TRP D 35 SHEET 6 AB7 6 GLN D 53 SER D 54 -1 O GLN D 53 N LYS D 49 SHEET 1 AB8 5 GLU C 10 LYS C 12 0 SHEET 2 AB8 5 THR C 113 VAL C 117 1 O THR C 114 N GLU C 10 SHEET 3 AB8 5 THR C 93 GLY C 99 -1 N TYR C 94 O THR C 113 SHEET 4 AB8 5 LEU C 34 LYS C 38 -1 N ASN C 35 O ALA C 97 SHEET 5 AB8 5 LYS C 46 ILE C 51 -1 O MET C 48 N TRP C 36 SHEET 1 AB9 4 GLU C 10 LYS C 12 0 SHEET 2 AB9 4 THR C 113 VAL C 117 1 O THR C 114 N GLU C 10 SHEET 3 AB9 4 THR C 93 GLY C 99 -1 N TYR C 94 O THR C 113 SHEET 4 AB9 4 PHE C 106 VAL C 108 -1 O VAL C 108 N ARG C 98 SHEET 1 AC1 3 VAL C 18 LYS C 23 0 SHEET 2 AC1 3 THR C 78 ILE C 83 -1 O LEU C 81 N ILE C 20 SHEET 3 AC1 3 PHE C 68 ALA C 69 -1 O ALA C 69 N LYS C 82 SHEET 1 AC2 3 VAL C 18 LYS C 23 0 SHEET 2 AC2 3 THR C 78 ILE C 83 -1 O LEU C 81 N ILE C 20 SHEET 3 AC2 3 LEU C 72 GLU C 73 -1 N GLU C 73 O THR C 78 SSBOND 1 CYS L 23 CYS L 87 1555 1555 2.04 SSBOND 2 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.03 SSBOND 4 CYS A 22 CYS A 98 1555 1555 2.03 SSBOND 5 CYS G 336 CYS G 361 1555 1555 2.03 SSBOND 6 CYS G 379 CYS G 432 1555 1555 2.04 SSBOND 7 CYS G 480 CYS G 488 1555 1555 2.03 SSBOND 8 CYS D 23 CYS D 88 1555 1555 2.04 SSBOND 9 CYS C 22 CYS C 96 1555 1555 2.03 LINK ND2 ASN G 343 C1 NAG E 1 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.44 CISPEP 1 SER L 7 PRO L 8 0 -6.28 CISPEP 2 SER D 7 PRO D 8 0 -1.66 CISPEP 3 TRP D 94 PRO D 95 0 -7.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 789 LYS L 104 TER 1708 SER H 121 TER 2545 LYS B 107 TER 3467 SER A 118 TER 5015 GLY G 526 TER 5833 ASN D 107 TER 6781 SER C 119 HETATM 6782 C1 NAG E 1 238.189 176.429 197.706 1.00182.55 C HETATM 6783 C2 NAG E 1 238.424 177.286 198.954 1.00182.55 C HETATM 6784 C3 NAG E 1 239.897 177.676 199.074 1.00182.55 C HETATM 6785 C4 NAG E 1 240.802 176.455 198.989 1.00182.55 C HETATM 6786 C5 NAG E 1 240.495 175.677 197.709 1.00182.55 C HETATM 6787 C6 NAG E 1 241.282 174.391 197.574 1.00182.55 C HETATM 6788 C7 NAG E 1 237.142 179.090 200.020 1.00182.55 C HETATM 6789 C8 NAG E 1 236.285 180.298 199.793 1.00182.55 C HETATM 6790 N2 NAG E 1 237.586 178.473 198.922 1.00182.55 N HETATM 6791 O3 NAG E 1 240.109 178.332 200.319 1.00182.55 O HETATM 6792 O4 NAG E 1 242.160 176.885 198.985 1.00182.55 O HETATM 6793 O5 NAG E 1 239.106 175.318 197.696 1.00182.55 O HETATM 6794 O6 NAG E 1 241.433 174.003 196.215 1.00182.55 O HETATM 6795 O7 NAG E 1 237.426 178.698 201.145 1.00182.55 O HETATM 6796 C1 NAG E 2 242.862 176.492 200.193 1.00193.68 C HETATM 6797 C2 NAG E 2 244.208 177.204 200.210 1.00193.68 C HETATM 6798 C3 NAG E 2 245.001 176.781 201.441 1.00193.68 C HETATM 6799 C4 NAG E 2 244.189 176.989 202.717 1.00193.68 C HETATM 6800 C5 NAG E 2 242.796 176.362 202.594 1.00193.68 C HETATM 6801 C6 NAG E 2 241.892 176.717 203.751 1.00193.68 C HETATM 6802 C7 NAG E 2 245.213 177.870 198.073 1.00193.68 C HETATM 6803 C8 NAG E 2 246.006 177.423 196.885 1.00193.68 C HETATM 6804 N2 NAG E 2 244.963 176.937 198.997 1.00193.68 N HETATM 6805 O3 NAG E 2 246.202 177.541 201.486 1.00193.68 O HETATM 6806 O4 NAG E 2 244.838 176.332 203.801 1.00193.68 O HETATM 6807 O5 NAG E 2 242.135 176.813 201.399 1.00193.68 O HETATM 6808 O6 NAG E 2 242.101 178.059 204.166 1.00193.68 O HETATM 6809 O7 NAG E 2 244.811 179.023 198.191 1.00193.68 O HETATM 6810 C1 BMA E 3 245.529 177.245 204.671 1.00210.56 C HETATM 6811 C2 BMA E 3 245.584 176.595 206.074 1.00210.56 C HETATM 6812 C3 BMA E 3 246.559 177.345 206.990 1.00210.56 C HETATM 6813 C4 BMA E 3 247.911 177.599 206.303 1.00210.56 C HETATM 6814 C5 BMA E 3 247.672 178.351 204.990 1.00210.56 C HETATM 6815 C6 BMA E 3 248.951 178.626 204.231 1.00210.56 C HETATM 6816 O2 BMA E 3 246.065 175.264 205.988 1.00210.56 O HETATM 6817 O3 BMA E 3 246.759 176.645 208.213 1.00210.56 O HETATM 6818 O4 BMA E 3 248.745 178.373 207.141 1.00210.56 O HETATM 6819 O5 BMA E 3 246.830 177.532 204.156 1.00210.56 O HETATM 6820 O6 BMA E 3 248.712 179.698 203.327 1.00210.56 O CONECT 165 648 CONECT 648 165 CONECT 936 1515 CONECT 1515 936 CONECT 1886 2390 CONECT 2390 1886 CONECT 2696 3313 CONECT 3313 2696 CONECT 3496 3707 CONECT 3557 6782 CONECT 3707 3496 CONECT 3853 4260 CONECT 4260 3853 CONECT 4656 4709 CONECT 4709 4656 CONECT 5175 5687 CONECT 5687 5175 CONECT 5998 6599 CONECT 6599 5998 CONECT 6782 3557 6783 6793 CONECT 6783 6782 6784 6790 CONECT 6784 6783 6785 6791 CONECT 6785 6784 6786 6792 CONECT 6786 6785 6787 6793 CONECT 6787 6786 6794 CONECT 6788 6789 6790 6795 CONECT 6789 6788 CONECT 6790 6783 6788 CONECT 6791 6784 CONECT 6792 6785 6796 CONECT 6793 6782 6786 CONECT 6794 6787 CONECT 6795 6788 CONECT 6796 6792 6797 6807 CONECT 6797 6796 6798 6804 CONECT 6798 6797 6799 6805 CONECT 6799 6798 6800 6806 CONECT 6800 6799 6801 6807 CONECT 6801 6800 6808 CONECT 6802 6803 6804 6809 CONECT 6803 6802 CONECT 6804 6797 6802 CONECT 6805 6798 CONECT 6806 6799 6810 CONECT 6807 6796 6800 CONECT 6808 6801 CONECT 6809 6802 CONECT 6810 6806 6811 6819 CONECT 6811 6810 6812 6816 CONECT 6812 6811 6813 6817 CONECT 6813 6812 6814 6818 CONECT 6814 6813 6815 6819 CONECT 6815 6814 6820 CONECT 6816 6811 CONECT 6817 6812 CONECT 6818 6813 CONECT 6819 6810 6814 CONECT 6820 6815 MASTER 180 0 3 8 77 0 0 6 6813 7 58 71 END