HEADER OXIDOREDUCTASE 06-DEC-24 9KWS TITLE D98N MUTANT OF A COPPER-CONTAINING NITRITE REDUCTASE FROM GEOBACILLUS TITLE 2 THERMODENITRIFICANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER-CONTAINING NITRITE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.7.2.1; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS THERMODENITRIFICANS (STRAIN NG80- SOURCE 3 2); SOURCE 4 ORGANISM_TAXID: 420246; SOURCE 5 GENE: NIRK, GTNG_0650; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS COPPER, DENITRIFICATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.FUKUDA,M.LINTULUOTO,Y.HIRANO,K.KUSAKA,T.INOUE REVDAT 2 02-JUL-25 9KWS 1 JRNL REVDAT 1 11-JUN-25 9KWS 0 JRNL AUTH Y.FUKUDA,M.LINTULUOTO,Y.HIRANO,K.KUSAKA,T.INOUE,T.TAMADA JRNL TITL STRUCTURAL BASIS OF CUPROENZYME NITRITE REDUCTION AT THE JRNL TITL 2 LEVEL OF A SINGLE HYDROGEN ATOM. JRNL REF J.BIOL.CHEM. V. 301 10290 2025 JRNL REFN ESSN 1083-351X JRNL PMID 40436316 JRNL DOI 10.1016/J.JBC.2025.110290 REMARK 2 REMARK 2 RESOLUTION. 1.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 193376 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.090 REMARK 3 R VALUE (WORKING SET) : 0.090 REMARK 3 FREE R VALUE : 0.101 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 9571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.2600 - 3.2600 0.98 6028 329 0.0952 0.1062 REMARK 3 2 3.2600 - 2.5900 0.98 6042 321 0.0900 0.1052 REMARK 3 3 2.5900 - 2.2600 0.98 6017 305 0.0873 0.0938 REMARK 3 4 2.2600 - 2.0600 0.98 6019 320 0.0832 0.0942 REMARK 3 5 2.0500 - 1.9100 0.98 6072 341 0.0843 0.1003 REMARK 3 6 1.9100 - 1.8000 0.99 6080 295 0.0798 0.0849 REMARK 3 7 1.8000 - 1.7100 0.99 6137 310 0.0731 0.0752 REMARK 3 8 1.7100 - 1.6300 0.99 6124 298 0.0720 0.0863 REMARK 3 9 1.6300 - 1.5700 0.99 6058 332 0.0713 0.0813 REMARK 3 10 1.5700 - 1.5100 0.99 6163 296 0.0715 0.0867 REMARK 3 11 1.5100 - 1.4700 1.00 6212 242 0.0699 0.0737 REMARK 3 12 1.4700 - 1.4300 1.00 6154 322 0.0703 0.0799 REMARK 3 13 1.4300 - 1.3900 1.00 6110 324 0.0712 0.0806 REMARK 3 14 1.3900 - 1.3500 1.00 6168 341 0.0743 0.0948 REMARK 3 15 1.3500 - 1.3200 1.00 6142 344 0.0762 0.0935 REMARK 3 16 1.3200 - 1.2900 1.00 6165 311 0.0815 0.0986 REMARK 3 17 1.2900 - 1.2700 1.00 6121 323 0.0843 0.0845 REMARK 3 18 1.2700 - 1.2400 1.00 6147 293 0.1021 0.1167 REMARK 3 19 1.2400 - 1.2200 1.00 6137 342 0.1059 0.1193 REMARK 3 20 1.2200 - 1.2000 1.00 6170 324 0.1023 0.1130 REMARK 3 21 1.2000 - 1.1800 1.00 6169 287 0.0988 0.1069 REMARK 3 22 1.1800 - 1.1600 1.00 6158 371 0.0959 0.1056 REMARK 3 23 1.1600 - 1.1500 1.00 6179 286 0.0949 0.1072 REMARK 3 24 1.1500 - 1.1300 1.00 6153 324 0.1009 0.0976 REMARK 3 25 1.1300 - 1.1200 1.00 6128 352 0.1109 0.1220 REMARK 3 26 1.1200 - 1.1000 1.00 6219 305 0.1270 0.1436 REMARK 3 27 1.1000 - 1.0900 1.00 6070 320 0.1573 0.1536 REMARK 3 28 1.0900 - 1.0700 1.00 6146 327 0.1831 0.1950 REMARK 3 29 1.0700 - 1.0600 1.00 6134 351 0.2183 0.2246 REMARK 3 30 1.0600 - 1.0500 1.00 6183 335 0.2573 0.2660 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.095 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 7.453 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2874 REMARK 3 ANGLE : 1.086 3969 REMARK 3 CHIRALITY : 0.087 416 REMARK 3 PLANARITY : 0.008 544 REMARK 3 DIHEDRAL : 7.764 412 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9KWS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300054476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 193408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.050 REMARK 200 RESOLUTION RANGE LOW (A) : 42.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4YSO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M ACETATE BUFFER PH 4.5, 5.5% REMARK 280 (W/V) PEG 4000, AND 75 MM CUSO4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 57.51900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.20861 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.13433 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 57.51900 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 33.20861 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.13433 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 57.51900 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 33.20861 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.13433 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.41722 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 56.26867 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 66.41722 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 56.26867 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 66.41722 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 56.26867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -269.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 852 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 912 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 ASN A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 THR A 10 REMARK 465 GLN A 11 REMARK 465 GLN A 12 REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 PRO A 15 REMARK 465 ASN A 16 REMARK 465 VAL A 17 REMARK 465 ASP A 316 REMARK 465 GLY A 317 REMARK 465 THR A 318 REMARK 465 GLU A 319 REMARK 465 THR A 320 REMARK 465 SER A 321 REMARK 465 GLY A 322 REMARK 465 HIS A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 209 O HOH A 507 1.57 REMARK 500 O HOH A 829 O HOH A 858 1.91 REMARK 500 O HOH A 883 O HOH A 914 1.95 REMARK 500 O HOH A 728 O HOH A 781 2.04 REMARK 500 OD1 ASP A 167 O HOH A 501 2.07 REMARK 500 O HOH A 813 O HOH A 839 2.07 REMARK 500 OD2 ASP A 315 O HOH A 502 2.11 REMARK 500 O HOH A 802 O HOH A 869 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 905 O HOH A 905 3555 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 92 -19.24 -143.33 REMARK 500 SER A 242 79.35 -112.82 REMARK 500 ASP A 256 13.14 58.38 REMARK 500 ASN A 261 64.97 -103.92 REMARK 500 SER A 274 0.12 80.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 292 THR A 293 144.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 926 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 927 DISTANCE = 6.15 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 406 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 NE2 REMARK 620 2 HOH A 697 O 88.8 REMARK 620 3 HOH A 746 O 93.5 165.5 REMARK 620 4 HOH A 772 O 101.3 96.8 96.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 405 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 42 NE2 REMARK 620 2 GLU A 53 OE2 43.1 REMARK 620 3 HIS A 83 ND1 106.4 80.9 REMARK 620 4 HOH A 532 O 168.1 147.3 84.0 REMARK 620 5 HOH A 801 O 100.1 72.8 103.4 82.8 REMARK 620 6 HOH A 801 O 125.7 84.2 68.4 63.2 39.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 CYS A 135 SG 135.2 REMARK 620 3 HIS A 143 ND1 103.0 107.1 REMARK 620 4 MET A 148 SD 81.6 113.2 115.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 402 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HIS A 134 NE2 115.0 REMARK 620 3 HIS A 294 NE2 71.6 106.8 REMARK 620 4 CL A 408 CL 128.1 102.4 130.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 407 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 167 OD2 REMARK 620 2 HOH A 501 O 91.7 REMARK 620 3 HOH A 520 O 92.6 78.3 REMARK 620 4 HOH A 656 O 94.6 150.8 72.9 REMARK 620 5 HOH A 830 O 97.9 107.3 167.9 100.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 409 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 239 OE1 REMARK 620 2 GLU A 239 OE2 45.7 REMARK 620 3 HOH A 516 O 57.0 93.7 REMARK 620 4 HOH A 882 O 123.4 163.7 71.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 410 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 516 O REMARK 620 2 HOH A 797 O 58.3 REMARK 620 3 HOH A 824 O 88.4 77.6 REMARK 620 N 1 2 DBREF 9KWS A 2 323 UNP A4IL26 A4IL26_GEOTN 31 352 SEQADV 9KWS MET A 1 UNP A4IL26 INITIATING METHIONINE SEQADV 9KWS ASN A 98 UNP A4IL26 ASP 127 ENGINEERED MUTATION SEQRES 1 A 323 MET GLU SER LYS ASN LYS THR ALA ALA THR GLN GLN SER SEQRES 2 A 323 GLU PRO ASN VAL ILE ALA ALA HIS LYS GLY VAL ASN GLN SEQRES 3 A 323 ALA PRO VAL PRO LEU LYS MET GLU ARG VAL GLY PRO HIS SEQRES 4 A 323 ASP VAL HIS ILE GLU MET THR ALA GLN ILE THR ASP ILE SEQRES 5 A 323 GLU ILE ASP LYS GLY LYS ILE TYR LYS ALA TRP THR PHE SEQRES 6 A 323 ASN GLY GLN ALA PRO GLY PRO LEU VAL VAL VAL ASN GLU SEQRES 7 A 323 GLY ASP THR ILE HIS PHE THR LEU LYS ASN MET ASP PRO SEQRES 8 A 323 VAL VAL PRO HIS SER MET ASN PHE HIS ALA VAL HIS ALA SEQRES 9 A 323 SER PRO SER LYS ASP PHE ILE ASP VAL MET PRO ASN LYS SEQRES 10 A 323 SER GLY THR PHE THR TYR PRO ALA ASN LYS PRO GLY VAL SEQRES 11 A 323 PHE MET TYR HIS CYS GLY THR LYS PRO VAL LEU GLN HIS SEQRES 12 A 323 ILE ALA ASN GLY MET HIS GLY VAL ILE ILE VAL LYS PRO SEQRES 13 A 323 LYS ASN GLY TYR PRO THR ASP LYS GLU VAL ASP ARG GLU SEQRES 14 A 323 TYR VAL LEU ILE GLN ASN GLU TRP TYR LYS TYR ASN ASP SEQRES 15 A 323 MET ASN ASP PHE GLN ASN GLY VAL PRO SER TYR VAL VAL SEQRES 16 A 323 PHE SER SER LYS ALA LEU LYS PRO GLY ASP PRO ASN THR SEQRES 17 A 323 ASN GLY ASP THR PHE THR LEU LYS GLU LYS PRO LEU LEU SEQRES 18 A 323 ALA LYS VAL GLY GLU LYS ILE ARG LEU TYR ILE ASN ASN SEQRES 19 A 323 VAL GLY PRO ASN GLU VAL SER SER PHE HIS VAL VAL GLY SEQRES 20 A 323 THR VAL PHE ASP ASP VAL TYR LEU ASP GLY ASN PRO ASN SEQRES 21 A 323 ASN HIS LEU GLN GLY MET GLN THR VAL MET LEU PRO ALA SEQRES 22 A 323 SER GLY GLY ALA VAL VAL GLU PHE THR VAL THR ARG PRO SEQRES 23 A 323 GLY THR TYR PRO ILE VAL THR HIS GLN PHE ASN HIS ALA SEQRES 24 A 323 GLN LYS GLY ALA VAL ALA MET LEU LYS VAL THR GLU THR SEQRES 25 A 323 GLY GLU ASP ASP GLY THR GLU THR SER GLY HIS HET CU A 401 1 HET CU A 402 1 HET MPD A 403 8 HET ACY A 404 4 HET CU A 405 1 HET CU A 406 1 HET CU A 407 1 HET CL A 408 1 HET NA A 409 1 HET NA A 410 1 HETNAM CU COPPER (II) ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ACY ACETIC ACID HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 CU 5(CU 2+) FORMUL 4 MPD C6 H14 O2 FORMUL 5 ACY C2 H4 O2 FORMUL 9 CL CL 1- FORMUL 10 NA 2(NA 1+) FORMUL 12 HOH *427(H2 O) HELIX 1 AA1 ILE A 18 LYS A 22 5 5 HELIX 2 AA2 SER A 105 PHE A 110 1 6 HELIX 3 AA3 PRO A 139 ASN A 146 1 8 HELIX 4 AA4 THR A 162 VAL A 166 5 5 HELIX 5 AA5 ASP A 182 GLY A 189 1 8 HELIX 6 AA6 PHE A 213 LYS A 218 1 6 HELIX 7 AA7 GLN A 295 LYS A 301 1 7 SHEET 1 AA1 3 LYS A 32 GLY A 37 0 SHEET 2 AA1 3 ASP A 40 ASP A 55 -1 O HIS A 42 N GLU A 34 SHEET 3 AA1 3 LYS A 58 PHE A 65 -1 O TYR A 60 N ILE A 52 SHEET 1 AA2 4 LYS A 32 GLY A 37 0 SHEET 2 AA2 4 ASP A 40 ASP A 55 -1 O HIS A 42 N GLU A 34 SHEET 3 AA2 4 ASP A 80 ASN A 88 1 O HIS A 83 N VAL A 41 SHEET 4 AA2 4 SER A 118 ALA A 125 -1 O PHE A 121 N PHE A 84 SHEET 1 AA3 4 VAL A 74 ASN A 77 0 SHEET 2 AA3 4 HIS A 149 LYS A 155 1 O ILE A 153 N VAL A 74 SHEET 3 AA3 4 GLY A 129 HIS A 134 -1 N GLY A 129 O VAL A 154 SHEET 4 AA3 4 ASN A 98 PHE A 99 -1 N ASN A 98 O HIS A 134 SHEET 1 AA4 6 TYR A 193 LYS A 199 0 SHEET 2 AA4 6 ARG A 168 TRP A 177 -1 N ASN A 175 O VAL A 195 SHEET 3 AA4 6 LYS A 227 GLY A 236 1 O ARG A 229 N ARG A 168 SHEET 4 AA4 6 GLY A 276 THR A 282 -1 O PHE A 281 N ILE A 228 SHEET 5 AA4 6 PHE A 250 LEU A 255 -1 N TYR A 254 O VAL A 278 SHEET 6 AA4 6 HIS A 262 MET A 266 -1 O MET A 266 N PHE A 250 SHEET 1 AA5 5 LEU A 220 LYS A 223 0 SHEET 2 AA5 5 VAL A 304 THR A 310 1 O LYS A 308 N LEU A 220 SHEET 3 AA5 5 GLY A 287 THR A 293 -1 N GLY A 287 O VAL A 309 SHEET 4 AA5 5 SER A 241 VAL A 245 -1 N HIS A 244 O VAL A 292 SHEET 5 AA5 5 VAL A 269 LEU A 271 -1 O LEU A 271 N SER A 241 LINK NE2 HIS A 39 CU CU A 406 1555 1555 1.94 LINK NE2 HIS A 42 CU CU A 405 1555 1555 2.04 LINK OE2 GLU A 53 CU CU A 405 1555 6445 2.05 LINK ND1 HIS A 83 CU CU A 405 1555 1555 1.94 LINK ND1 HIS A 95 CU CU A 401 1555 1555 2.03 LINK NE2 HIS A 100 CU CU A 402 1555 1555 1.98 LINK NE2 HIS A 134 CU CU A 402 1555 1555 2.00 LINK SG CYS A 135 CU CU A 401 1555 1555 2.20 LINK ND1 HIS A 143 CU CU A 401 1555 1555 2.06 LINK SD AMET A 148 CU CU A 401 1555 1555 2.62 LINK OD2 ASP A 167 CU CU A 407 1555 1555 2.14 LINK OE1AGLU A 239 NA A NA A 409 1555 1555 3.04 LINK OE2AGLU A 239 NA A NA A 409 1555 1555 2.15 LINK NE2 HIS A 294 CU CU A 402 1555 2555 2.02 LINK CU CU A 402 CL CL A 408 1555 1555 2.32 LINK CU CU A 405 O HOH A 532 1555 8444 2.44 LINK CU CU A 405 O AHOH A 801 1555 1555 2.40 LINK CU CU A 405 O BHOH A 801 1555 1555 1.97 LINK CU CU A 406 O HOH A 697 1555 1555 2.17 LINK CU CU A 406 O HOH A 746 1555 1555 2.14 LINK CU CU A 406 O HOH A 772 1555 1555 2.02 LINK CU CU A 407 O HOH A 501 1555 1555 2.29 LINK CU CU A 407 O HOH A 520 1555 1555 1.98 LINK CU CU A 407 O HOH A 656 1555 1555 2.63 LINK CU CU A 407 O BHOH A 830 1555 1555 2.21 LINK NA A NA A 409 O HOH A 516 1555 1555 2.59 LINK NA A NA A 409 O HOH A 882 1555 1555 2.43 LINK NA C NA A 410 O HOH A 516 1555 1555 3.17 LINK NA C NA A 410 O HOH A 797 1555 1555 3.00 LINK NA C NA A 410 O HOH A 824 1555 1555 3.05 CISPEP 1 ALA A 69 PRO A 70 0 -11.59 CISPEP 2 LYS A 138 PRO A 139 0 -5.61 CISPEP 3 LYS A 138 PRO A 139 0 -3.05 CISPEP 4 GLY A 236 PRO A 237 0 19.42 CRYST1 115.038 115.038 84.403 90.00 90.00 120.00 H 3 9 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008693 0.005019 0.000000 0.00000 SCALE2 0.000000 0.010038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011848 0.00000 CONECT 336 5042 CONECT 398 5041 CONECT 1080 5041 CONECT 1306 5027 CONECT 1388 5028 CONECT 1975 5028 CONECT 1988 5027 CONECT 2104 5027 CONECT 2177 5027 CONECT 2548 5043 CONECT 3866 5045 CONECT 3868 5045 CONECT 5027 1306 1988 2104 2177 CONECT 5028 1388 1975 5044 CONECT 5029 5030 CONECT 5030 5029 5031 5032 5033 CONECT 5031 5030 CONECT 5032 5030 CONECT 5033 5030 5034 CONECT 5034 5033 5035 5036 CONECT 5035 5034 CONECT 5036 5034 CONECT 5037 5038 5039 5040 CONECT 5038 5037 CONECT 5039 5037 CONECT 5040 5037 CONECT 5041 398 1080 5472 5473 CONECT 5042 336 5338 5409 5439 CONECT 5043 2548 5047 5071 5282 CONECT 5043 5505 CONECT 5044 5028 CONECT 5045 3866 3868 5063 5560 CONECT 5046 5063 5468 5498 CONECT 5047 5043 CONECT 5063 5045 5046 CONECT 5071 5043 CONECT 5282 5043 CONECT 5338 5042 CONECT 5409 5042 CONECT 5439 5042 CONECT 5468 5046 CONECT 5472 5041 CONECT 5473 5041 CONECT 5498 5046 CONECT 5505 5043 CONECT 5560 5045 MASTER 442 0 10 7 22 0 0 6 2761 1 46 25 END