data_9L4E # _entry.id 9L4E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.408 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9L4E pdb_00009l4e 10.2210/pdb9l4e/pdb WWPDB D_1300054958 ? ? BMRB 36722 ? 10.13018/BMR36722 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-12-24 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 9L4E _pdbx_database_status.recvd_initial_deposition_date 2024-12-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution Structure of the 2:1 Complex Between the Benzothiazole Derivative BTO and the MYC G-quadruplex' _pdbx_database_related.db_id 36722 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email ccao@mail.sioc.ac.cn _pdbx_contact_author.name_first Chunyang _pdbx_contact_author.name_last Cao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7865-8249 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Ni, X.' 1 0009-0001-9996-0313 'Hu, X.' 2 0009-0001-4781-2474 'Cao, C.' 3 0000-0001-7865-8249 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 53 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Molecular recognition and effects of a benzothiazole derivative targeting the MYC G-quadruplex.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaf888 _citation.pdbx_database_id_PubMed 40966493 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ni, X.' 1 ? primary 'Hu, X.D.' 2 ? primary 'Long, W.' 3 ? primary 'Lan, W.' 4 ? primary 'Wang, C.' 5 ? primary 'Wong, W.L.' 6 0000-0001-7191-7578 primary 'Cao, C.' 7 0000-0001-7865-8249 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*GP*GP*GP*TP*GP*GP*GP*TP*AP*A)-3') ; 7008.510 1 ? ? ? ? 2 non-polymer syn '(2~{Z})-2-[(1,2-dimethylquinolin-1-ium-4-yl)methylidene]-3-(3-pyrrolidin-1-ium-1-ylpropyl)-1,3-benzothiazole' 417.609 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DT)(DG)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT)(DA)(DG)(DG)(DG)(DT)(DG)(DG)(DG)(DT) (DA)(DA) ; _entity_poly.pdbx_seq_one_letter_code_can TGAGGGTGGGTAGGGTGGGTAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(2~{Z})-2-[(1,2-dimethylquinolin-1-ium-4-yl)methylidene]-3-(3-pyrrolidin-1-ium-1-ylpropyl)-1,3-benzothiazole' _pdbx_entity_nonpoly.comp_id A1EIH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DA n 1 4 DG n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DT n 1 12 DA n 1 13 DG n 1 14 DG n 1 15 DG n 1 16 DT n 1 17 DG n 1 18 DG n 1 19 DG n 1 20 DT n 1 21 DA n 1 22 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 22 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1EIH non-polymer . '(2~{Z})-2-[(1,2-dimethylquinolin-1-ium-4-yl)methylidene]-3-(3-pyrrolidin-1-ium-1-ylpropyl)-1,3-benzothiazole' ? 'C26 H31 N3 S 2' 417.609 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DA 3 3 3 DA DA A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DA 12 12 12 DA DA A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DT 16 16 16 DT DT A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DG 18 18 18 DG DG A . n A 1 19 DG 19 19 19 DG DG A . n A 1 20 DT 20 20 20 DT DT A . n A 1 21 DA 21 21 21 DA DA A . n A 1 22 DA 22 22 22 DA DA A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1EIH _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1EIH _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1EIH 1 101 101 A1EIH BTO A . C 2 A1EIH 1 102 102 A1EIH BTO A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9L4E _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 9L4E _struct.title 'Solution Structure of the 2:1 Complex Between the Benzothiazole Derivative BTO-28 and the MYC G-quadruplex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9L4E _struct_keywords.text 'MYC, Quadruplex, Complex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9L4E _struct_ref.pdbx_db_accession 9L4E _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9L4E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 22 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9L4E _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 22 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 22 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'mass spectrometry' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 4 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 4 N7 ? ? ? 1_555 A DG 17 N2 ? ? A DG 4 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DG 17 N1 ? ? A DG 4 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 5 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 5 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 18 N2 ? ? A DG 5 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 18 N1 ? ? A DG 5 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 6 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 6 N7 ? ? ? 1_555 A DG 19 N2 ? ? A DG 6 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DG 19 N1 ? ? A DG 6 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 A DG 13 O6 ? ? A DG 8 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 A DG 13 N7 ? ? A DG 8 A DG 13 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DG 14 O6 ? ? A DG 9 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DG 14 N7 ? ? A DG 9 A DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 15 O6 ? ? A DG 10 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 15 N7 ? ? A DG 10 A DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 13 N1 ? ? ? 1_555 A DG 17 O6 ? ? A DG 13 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 13 N2 ? ? ? 1_555 A DG 17 N7 ? ? A DG 13 A DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 14 N1 ? ? ? 1_555 A DG 18 O6 ? ? A DG 14 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? A DG 14 N2 ? ? ? 1_555 A DG 18 N7 ? ? A DG 14 A DG 18 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DG 19 O6 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DG 19 N7 ? ? A DG 15 A DG 19 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_entry_details.entry_id 9L4E _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_nmr_ensemble.entry_id 9L4E _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 9L4E _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '700 uM MYC_BTO-28, 90% H2O/10% D2O' '90% H2O/10% D2O' 1H_sample solution Complex 2 '100 uM 15N Guanine 15N_MYC_BTO-28, 90% H2O/10% D2O' '90% H2O/10% D2O' 15N_sample solution Complex # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 MYC_BTO-28 700 ? uM 'natural abundance' 2 15N_MYC_BTO-28 100 ? uM '15N Guanine' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details 'Potassium phosphate butter' _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D DQF-COSY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H NOESY' 1 isotropic 4 1 2 '2D 1H-15N HSQC' 1 isotropic # _pdbx_nmr_refine.entry_id 9L4E _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 4 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection VnmrJ ? Varian 2 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 3 'peak picking' Sparky ? Goddard 4 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1EIH C1 C Y N 1 A1EIH C2 C N N 2 A1EIH C3 C Y N 3 A1EIH C4 C Y N 4 A1EIH C5 C Y N 5 A1EIH C6 C Y N 6 A1EIH C7 C N N 7 A1EIH N1 N Y N 8 A1EIH C8 C Y N 9 A1EIH C9 C N N 10 A1EIH C10 C Y N 11 A1EIH C11 C N N 12 A1EIH C12 C Y N 13 A1EIH N2 N N N 14 A1EIH C17 C N N 15 A1EIH C15 C Y N 16 A1EIH C25 C Y N 17 A1EIH C18 C Y N 18 A1EIH C26 C Y N 19 A1EIH C22 C N N 20 A1EIH C19 C N N 21 A1EIH C16 C Y N 22 A1EIH C13 C Y N 23 A1EIH C23 C Y N 24 A1EIH S1 S N N 25 A1EIH C14 C N N 26 A1EIH C24 C N N 27 A1EIH N3 N N N 28 A1EIH C20 C N N 29 A1EIH C21 C N N 30 A1EIH H2 H N N 31 A1EIH H22 H N N 32 A1EIH H8 H N N 33 A1EIH H17 H N N 34 A1EIH H27 H N N 35 A1EIH H4 H N N 36 A1EIH H6 H N N 37 A1EIH H21 H N N 38 A1EIH H20 H N N 39 A1EIH H11 H N N 40 A1EIH H19 H N N 41 A1EIH H10 H N N 42 A1EIH H5 H N N 43 A1EIH H13 H N N 44 A1EIH H28 H N N 45 A1EIH H18 H N N 46 A1EIH H26 H N N 47 A1EIH H12 H N N 48 A1EIH H16 H N N 49 A1EIH H32 H N N 50 A1EIH H24 H N N 51 A1EIH H25 H N N 52 A1EIH H1 H N N 53 A1EIH H30 H N N 54 A1EIH H3 H N N 55 A1EIH H15 H N N 56 A1EIH H7 H N N 57 A1EIH H23 H N N 58 A1EIH H14 H N N 59 A1EIH H29 H N N 60 A1EIH H31 H N N 61 DA OP3 O N N 62 DA P P N N 63 DA OP1 O N N 64 DA OP2 O N N 65 DA "O5'" O N N 66 DA "C5'" C N N 67 DA "C4'" C N R 68 DA "O4'" O N N 69 DA "C3'" C N S 70 DA "O3'" O N N 71 DA "C2'" C N N 72 DA "C1'" C N R 73 DA N9 N Y N 74 DA C8 C Y N 75 DA N7 N Y N 76 DA C5 C Y N 77 DA C6 C Y N 78 DA N6 N N N 79 DA N1 N Y N 80 DA C2 C Y N 81 DA N3 N Y N 82 DA C4 C Y N 83 DA HOP3 H N N 84 DA HOP2 H N N 85 DA "H5'" H N N 86 DA "H5''" H N N 87 DA "H4'" H N N 88 DA "H3'" H N N 89 DA "HO3'" H N N 90 DA "H2'" H N N 91 DA "H2''" H N N 92 DA "H1'" H N N 93 DA H8 H N N 94 DA H61 H N N 95 DA H62 H N N 96 DA H2 H N N 97 DG OP3 O N N 98 DG P P N N 99 DG OP1 O N N 100 DG OP2 O N N 101 DG "O5'" O N N 102 DG "C5'" C N N 103 DG "C4'" C N R 104 DG "O4'" O N N 105 DG "C3'" C N S 106 DG "O3'" O N N 107 DG "C2'" C N N 108 DG "C1'" C N R 109 DG N9 N Y N 110 DG C8 C Y N 111 DG N7 N Y N 112 DG C5 C Y N 113 DG C6 C N N 114 DG O6 O N N 115 DG N1 N N N 116 DG C2 C N N 117 DG N2 N N N 118 DG N3 N N N 119 DG C4 C Y N 120 DG HOP3 H N N 121 DG HOP2 H N N 122 DG "H5'" H N N 123 DG "H5''" H N N 124 DG "H4'" H N N 125 DG "H3'" H N N 126 DG "HO3'" H N N 127 DG "H2'" H N N 128 DG "H2''" H N N 129 DG "H1'" H N N 130 DG H8 H N N 131 DG H1 H N N 132 DG H21 H N N 133 DG H22 H N N 134 DT OP3 O N N 135 DT P P N N 136 DT OP1 O N N 137 DT OP2 O N N 138 DT "O5'" O N N 139 DT "C5'" C N N 140 DT "C4'" C N R 141 DT "O4'" O N N 142 DT "C3'" C N S 143 DT "O3'" O N N 144 DT "C2'" C N N 145 DT "C1'" C N R 146 DT N1 N N N 147 DT C2 C N N 148 DT O2 O N N 149 DT N3 N N N 150 DT C4 C N N 151 DT O4 O N N 152 DT C5 C N N 153 DT C7 C N N 154 DT C6 C N N 155 DT HOP3 H N N 156 DT HOP2 H N N 157 DT "H5'" H N N 158 DT "H5''" H N N 159 DT "H4'" H N N 160 DT "H3'" H N N 161 DT "HO3'" H N N 162 DT "H2'" H N N 163 DT "H2''" H N N 164 DT "H1'" H N N 165 DT H3 H N N 166 DT H71 H N N 167 DT H72 H N N 168 DT H73 H N N 169 DT H6 H N N 170 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1EIH C6 C4 doub Y N 1 A1EIH C6 C15 sing Y N 2 A1EIH C4 C12 sing Y N 3 A1EIH C17 N1 sing N N 4 A1EIH C15 C10 doub Y N 5 A1EIH C12 N1 doub Y N 6 A1EIH C12 C25 sing Y N 7 A1EIH N1 C26 sing Y N 8 A1EIH C10 C25 sing Y N 9 A1EIH C25 C8 doub Y N 10 A1EIH C26 C22 sing N N 11 A1EIH C26 C18 doub Y N 12 A1EIH C8 C18 sing Y N 13 A1EIH C8 C19 sing N N 14 A1EIH C19 C7 doub N Z 15 A1EIH C21 C11 sing N N 16 A1EIH C21 N3 sing N N 17 A1EIH C11 C20 sing N N 18 A1EIH C7 S1 sing N N 19 A1EIH C7 N2 sing N N 20 A1EIH N3 C9 sing N N 21 A1EIH N3 C2 sing N N 22 A1EIH C20 C2 sing N N 23 A1EIH C24 C9 sing N N 24 A1EIH C24 C14 sing N N 25 A1EIH S1 C5 sing N N 26 A1EIH C14 N2 sing N N 27 A1EIH N2 C16 sing N N 28 A1EIH C5 C16 doub Y N 29 A1EIH C5 C23 sing Y N 30 A1EIH C16 C3 sing Y N 31 A1EIH C23 C13 doub Y N 32 A1EIH C3 C1 doub Y N 33 A1EIH C13 C1 sing Y N 34 A1EIH C1 H2 sing N N 35 A1EIH C2 H22 sing N N 36 A1EIH C2 H8 sing N N 37 A1EIH C3 H17 sing N N 38 A1EIH C4 H27 sing N N 39 A1EIH C6 H4 sing N N 40 A1EIH C9 H6 sing N N 41 A1EIH C9 H21 sing N N 42 A1EIH C10 H20 sing N N 43 A1EIH C11 H11 sing N N 44 A1EIH C11 H19 sing N N 45 A1EIH C17 H10 sing N N 46 A1EIH C17 H5 sing N N 47 A1EIH C17 H13 sing N N 48 A1EIH C15 H28 sing N N 49 A1EIH C18 H18 sing N N 50 A1EIH C22 H26 sing N N 51 A1EIH C22 H12 sing N N 52 A1EIH C22 H16 sing N N 53 A1EIH C19 H32 sing N N 54 A1EIH C13 H24 sing N N 55 A1EIH C23 H25 sing N N 56 A1EIH C14 H1 sing N N 57 A1EIH C14 H30 sing N N 58 A1EIH C24 H3 sing N N 59 A1EIH C24 H15 sing N N 60 A1EIH C20 H7 sing N N 61 A1EIH C20 H23 sing N N 62 A1EIH C21 H14 sing N N 63 A1EIH C21 H29 sing N N 64 A1EIH N3 H31 sing N N 65 DA OP3 P sing N N 66 DA OP3 HOP3 sing N N 67 DA P OP1 doub N N 68 DA P OP2 sing N N 69 DA P "O5'" sing N N 70 DA OP2 HOP2 sing N N 71 DA "O5'" "C5'" sing N N 72 DA "C5'" "C4'" sing N N 73 DA "C5'" "H5'" sing N N 74 DA "C5'" "H5''" sing N N 75 DA "C4'" "O4'" sing N N 76 DA "C4'" "C3'" sing N N 77 DA "C4'" "H4'" sing N N 78 DA "O4'" "C1'" sing N N 79 DA "C3'" "O3'" sing N N 80 DA "C3'" "C2'" sing N N 81 DA "C3'" "H3'" sing N N 82 DA "O3'" "HO3'" sing N N 83 DA "C2'" "C1'" sing N N 84 DA "C2'" "H2'" sing N N 85 DA "C2'" "H2''" sing N N 86 DA "C1'" N9 sing N N 87 DA "C1'" "H1'" sing N N 88 DA N9 C8 sing Y N 89 DA N9 C4 sing Y N 90 DA C8 N7 doub Y N 91 DA C8 H8 sing N N 92 DA N7 C5 sing Y N 93 DA C5 C6 sing Y N 94 DA C5 C4 doub Y N 95 DA C6 N6 sing N N 96 DA C6 N1 doub Y N 97 DA N6 H61 sing N N 98 DA N6 H62 sing N N 99 DA N1 C2 sing Y N 100 DA C2 N3 doub Y N 101 DA C2 H2 sing N N 102 DA N3 C4 sing Y N 103 DG OP3 P sing N N 104 DG OP3 HOP3 sing N N 105 DG P OP1 doub N N 106 DG P OP2 sing N N 107 DG P "O5'" sing N N 108 DG OP2 HOP2 sing N N 109 DG "O5'" "C5'" sing N N 110 DG "C5'" "C4'" sing N N 111 DG "C5'" "H5'" sing N N 112 DG "C5'" "H5''" sing N N 113 DG "C4'" "O4'" sing N N 114 DG "C4'" "C3'" sing N N 115 DG "C4'" "H4'" sing N N 116 DG "O4'" "C1'" sing N N 117 DG "C3'" "O3'" sing N N 118 DG "C3'" "C2'" sing N N 119 DG "C3'" "H3'" sing N N 120 DG "O3'" "HO3'" sing N N 121 DG "C2'" "C1'" sing N N 122 DG "C2'" "H2'" sing N N 123 DG "C2'" "H2''" sing N N 124 DG "C1'" N9 sing N N 125 DG "C1'" "H1'" sing N N 126 DG N9 C8 sing Y N 127 DG N9 C4 sing Y N 128 DG C8 N7 doub Y N 129 DG C8 H8 sing N N 130 DG N7 C5 sing Y N 131 DG C5 C6 sing N N 132 DG C5 C4 doub Y N 133 DG C6 O6 doub N N 134 DG C6 N1 sing N N 135 DG N1 C2 sing N N 136 DG N1 H1 sing N N 137 DG C2 N2 sing N N 138 DG C2 N3 doub N N 139 DG N2 H21 sing N N 140 DG N2 H22 sing N N 141 DG N3 C4 sing N N 142 DT OP3 P sing N N 143 DT OP3 HOP3 sing N N 144 DT P OP1 doub N N 145 DT P OP2 sing N N 146 DT P "O5'" sing N N 147 DT OP2 HOP2 sing N N 148 DT "O5'" "C5'" sing N N 149 DT "C5'" "C4'" sing N N 150 DT "C5'" "H5'" sing N N 151 DT "C5'" "H5''" sing N N 152 DT "C4'" "O4'" sing N N 153 DT "C4'" "C3'" sing N N 154 DT "C4'" "H4'" sing N N 155 DT "O4'" "C1'" sing N N 156 DT "C3'" "O3'" sing N N 157 DT "C3'" "C2'" sing N N 158 DT "C3'" "H3'" sing N N 159 DT "O3'" "HO3'" sing N N 160 DT "C2'" "C1'" sing N N 161 DT "C2'" "H2'" sing N N 162 DT "C2'" "H2''" sing N N 163 DT "C1'" N1 sing N N 164 DT "C1'" "H1'" sing N N 165 DT N1 C2 sing N N 166 DT N1 C6 sing N N 167 DT C2 O2 doub N N 168 DT C2 N3 sing N N 169 DT N3 C4 sing N N 170 DT N3 H3 sing N N 171 DT C4 O4 doub N N 172 DT C4 C5 sing N N 173 DT C5 C7 sing N N 174 DT C5 C6 doub N N 175 DT C7 H71 sing N N 176 DT C7 H72 sing N N 177 DT C7 H73 sing N N 178 DT C6 H6 sing N N 179 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9L4E 'double helix' 9L4E 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 19 1_555 A DG 15 1_555 -1.913 -3.724 0.056 7.301 -3.521 83.844 1 A_DG19:DG15_A A 19 ? A 15 ? 6 3 1 A DG 14 1_555 A DG 18 1_555 1.477 3.760 -0.279 -4.078 6.558 -90.025 2 A_DG14:DG18_A A 14 ? A 18 ? 6 3 1 A DG 9 1_555 A DG 5 1_555 -1.464 -3.787 0.075 4.058 -3.829 89.443 3 A_DG9:DG5_A A 9 ? A 5 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 19 1_555 A DG 15 1_555 A DG 14 1_555 A DG 18 1_555 -0.336 1.117 -3.562 0.100 2.867 -29.307 -1.520 -0.686 -3.651 -5.650 0.197 -29.444 1 AA_DG19DG14:DG18DG15_AA A 19 ? A 15 ? A 14 ? A 18 ? 1 A DG 14 1_555 A DG 18 1_555 A DG 9 1_555 A DG 5 1_555 -0.768 -3.920 -0.062 6.598 0.191 179.987 -1.960 0.384 -0.062 0.095 -3.299 179.987 2 AA_DG14DG9:DG5DG18_AA A 14 ? A 18 ? A 9 ? A 5 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 22174155 _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model Premier _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Agilent _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 9L4E _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P S # loop_ #