HEADER HYDROLASE 20-DEC-24 9L4M TITLE STRUCTURE OF BIFUNCTIONAL YLEHD AT PH 8 FROM YARROWIA LIPOLYTICA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA/BETA HYDROLASE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YARROWIA LIPOLYTICA; SOURCE 3 ORGANISM_TAXID: 4952; SOURCE 4 STRAIN: YARROWIA LIPOLYTICA NCIM 3589; SOURCE 5 GENE: B0I71DRAFT_136998, YALI1_E23790G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS EPOXIDE HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.R.YADAV,K.N.VANARASE,S.S.INAMDAR,S.C.MANDE,A.R.KUMAR REVDAT 1 01-JUL-26 9L4M 0 JRNL AUTH K.N.VANARASE,A.R.KUMAR JRNL TITL STRUCTURE OF YLEHD AT PH 8 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.V.AFONINE,M.L.BAKER,G.BUNKOCZI,V.B.CHEN, REMARK 1 AUTH 2 T.I.CROLL,B.HINTZE,L.W.HUNG,S.JAIN,A.J.MCCOY,N.W.MORIARTY, REMARK 1 AUTH 3 R.D.OEFFNER,B.K.POON,M.G.PRISANT,R.J.READ,J.S.RICHARDSON, REMARK 1 AUTH 4 D.C.RICHARDSON,M.D.SAMMITO,O.V.SOBOLEV,D.H.STOCKWELL, REMARK 1 AUTH 5 T.C.TERWILLIGER,A.G.URZHUMTSEV,L.L.VIDEAU,C.J.WILLIAMS, REMARK 1 AUTH 6 P.D.ADAMS REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 75 861 2019 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 31588918 REMARK 1 DOI 10.1107/S2059798319011471 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX V1.21.2.5419 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 58776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.271 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 2827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.2600 - 5.9700 1.00 2929 143 0.1950 0.2395 REMARK 3 2 5.9700 - 4.7400 1.00 2864 151 0.2114 0.2564 REMARK 3 3 4.7400 - 4.1400 1.00 2852 105 0.2009 0.2843 REMARK 3 4 4.1400 - 3.7600 1.00 2865 148 0.2312 0.2562 REMARK 3 5 3.7600 - 3.4900 1.00 2790 147 0.2513 0.2912 REMARK 3 6 3.4900 - 3.2900 1.00 2773 142 0.2784 0.3100 REMARK 3 7 3.2900 - 3.1200 1.00 2802 170 0.3068 0.3086 REMARK 3 8 3.1200 - 2.9900 1.00 2804 128 0.3207 0.3631 REMARK 3 9 2.9900 - 2.8700 1.00 2730 162 0.3204 0.3415 REMARK 3 10 2.8700 - 2.7700 1.00 2812 138 0.3336 0.3390 REMARK 3 11 2.7700 - 2.6900 0.99 2795 139 0.3433 0.3673 REMARK 3 12 2.6900 - 2.6100 0.99 2756 144 0.3564 0.3671 REMARK 3 13 2.6100 - 2.5400 0.99 2784 165 0.3563 0.4263 REMARK 3 14 2.5400 - 2.4800 1.00 2726 143 0.3569 0.3914 REMARK 3 15 2.4800 - 2.4200 0.99 2792 136 0.3702 0.4023 REMARK 3 16 2.4200 - 2.3700 0.99 2751 142 0.3806 0.3888 REMARK 3 17 2.3700 - 2.3200 0.99 2801 131 0.3888 0.4010 REMARK 3 18 2.3200 - 2.2800 0.99 2760 131 0.4238 0.4220 REMARK 3 19 2.2800 - 2.2400 0.99 2804 139 0.4285 0.4300 REMARK 3 20 2.2400 - 2.2000 0.99 2759 123 0.4415 0.4210 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.377 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 8390 REMARK 3 ANGLE : 0.548 11436 REMARK 3 CHIRALITY : 0.041 1153 REMARK 3 PLANARITY : 0.005 1477 REMARK 3 DIHEDRAL : 14.676 2956 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -8.7130 0.6741 53.6238 REMARK 3 T TENSOR REMARK 3 T11: 0.3814 T22: 0.3014 REMARK 3 T33: 0.3443 T12: 0.0130 REMARK 3 T13: 0.0124 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 0.6228 L22: 0.4075 REMARK 3 L33: 0.7231 L12: 0.4122 REMARK 3 L13: -0.4336 L23: -0.3221 REMARK 3 S TENSOR REMARK 3 S11: 0.1108 S12: -0.1446 S13: -0.0084 REMARK 3 S21: 0.2126 S22: -0.0739 S23: -0.0044 REMARK 3 S31: -0.1174 S32: 0.0052 S33: -0.0354 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9L4M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-DEC-24. REMARK 100 THE DEPOSITION ID IS D_1300046082. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976238 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.0.3 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58974 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 72.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.05147 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63830 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM MALONATE, 18% PEG 3350, PH REMARK 280 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.16500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.15000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.16500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.15000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 46.16500 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 29.15000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PHE A 88 REMARK 465 GLU A 89 REMARK 465 GLU A 90 REMARK 465 ASN A 91 REMARK 465 PHE A 220 REMARK 465 ASP A 221 REMARK 465 GLY A 222 REMARK 465 GLU A 223 REMARK 465 SER A 350 REMARK 465 LYS A 351 REMARK 465 LEU A 352 REMARK 465 GLU B 86 REMARK 465 GLU B 87 REMARK 465 PHE B 88 REMARK 465 GLU B 89 REMARK 465 GLU B 90 REMARK 465 ASN B 91 REMARK 465 GLU B 92 REMARK 465 ASP B 93 REMARK 465 GLY B 94 REMARK 465 ILE B 95 REMARK 465 ASN B 96 REMARK 465 PHE B 220 REMARK 465 ASP B 221 REMARK 465 GLY B 222 REMARK 465 GLU B 223 REMARK 465 PRO B 224 REMARK 465 ASP B 225 REMARK 465 PRO B 226 REMARK 465 GLU B 227 REMARK 465 ALA B 228 REMARK 465 PRO B 229 REMARK 465 MET B 230 REMARK 465 SER B 350 REMARK 465 LYS B 351 REMARK 465 LEU B 352 REMARK 465 GLU C 87 REMARK 465 PHE C 88 REMARK 465 GLU C 89 REMARK 465 GLU C 90 REMARK 465 ASN C 91 REMARK 465 GLU C 92 REMARK 465 ASP C 93 REMARK 465 GLY C 94 REMARK 465 ILE C 95 REMARK 465 ASN C 96 REMARK 465 PHE C 220 REMARK 465 ASP C 221 REMARK 465 GLY C 222 REMARK 465 GLU C 223 REMARK 465 PRO C 224 REMARK 465 ASP C 225 REMARK 465 SER C 350 REMARK 465 LYS C 351 REMARK 465 LEU C 352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 ILE A 95 CG1 CG2 CD1 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 LYS A 188 CG CD CE NZ REMARK 470 ARG A 212 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 219 CG OD1 ND2 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 348 CG CD CE NZ REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 LYS B 183 CG CD CE NZ REMARK 470 LYS B 188 CG CD CE NZ REMARK 470 LEU B 191 CG CD1 CD2 REMARK 470 THR B 215 OG1 CG2 REMARK 470 ASN B 219 CG OD1 ND2 REMARK 470 SER B 293 OG REMARK 470 ILE B 297 CG1 CG2 CD1 REMARK 470 LEU B 299 CG CD1 CD2 REMARK 470 MET B 305 CG SD CE REMARK 470 LYS B 345 CG CD CE NZ REMARK 470 THR B 349 OG1 CG2 REMARK 470 GLU C 31 CG CD OE1 OE2 REMARK 470 LYS C 33 CG CD CE NZ REMARK 470 ASP C 34 CG OD1 OD2 REMARK 470 GLU C 104 CG CD OE1 OE2 REMARK 470 LYS C 132 CG CD CE NZ REMARK 470 GLU C 155 CG CD OE1 OE2 REMARK 470 ILE C 156 CG1 CG2 CD1 REMARK 470 GLU C 173 CG CD OE1 OE2 REMARK 470 LEU C 191 CG CD1 CD2 REMARK 470 GLN C 192 CG CD OE1 NE2 REMARK 470 ASN C 219 CG OD1 ND2 REMARK 470 GLU C 227 CG CD OE1 OE2 REMARK 470 LYS C 279 CG CD CE NZ REMARK 470 LYS C 280 CG CD CE NZ REMARK 470 THR C 283 OG1 CG2 REMARK 470 SER C 293 OG REMARK 470 ILE C 297 CG1 CG2 CD1 REMARK 470 LEU C 299 CG CD1 CD2 REMARK 470 GLU C 302 CG CD OE1 OE2 REMARK 470 LEU C 307 CG CD1 CD2 REMARK 470 ASP C 308 CG OD1 OD2 REMARK 470 GLU C 309 CG CD OE1 OE2 REMARK 470 GLU C 312 CG CD OE1 OE2 REMARK 470 LYS C 313 CG CD CE NZ REMARK 470 LYS C 315 CG CD CE NZ REMARK 470 VAL C 321 CG1 CG2 REMARK 470 LYS C 337 CG CD CE NZ REMARK 470 LEU C 346 CG CD1 CD2 REMARK 470 ASP C 347 CG OD1 OD2 REMARK 470 LYS C 348 CG CD CE NZ REMARK 470 THR C 349 OG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 10 CD OE2 REMARK 480 LYS B 313 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 4 41.70 -106.07 REMARK 500 ASP A 93 47.08 -89.63 REMARK 500 ASN A 96 78.52 44.05 REMARK 500 ARG A 108 -126.95 59.30 REMARK 500 ASP A 140 -124.17 56.86 REMARK 500 VAL A 198 -33.22 -37.33 REMARK 500 ALA A 228 -58.12 -155.23 REMARK 500 MET A 230 -18.50 -167.97 REMARK 500 PHE A 272 -67.29 -130.91 REMARK 500 ALA A 298 -70.41 -98.97 REMARK 500 PRO A 322 44.30 -92.26 REMARK 500 TRP A 326 53.91 -96.57 REMARK 500 ALA A 331 75.18 -119.25 REMARK 500 ALA B 2 -42.05 84.25 REMARK 500 ARG B 108 -128.72 55.67 REMARK 500 GLU B 109 36.33 -99.61 REMARK 500 ASP B 140 -124.04 54.18 REMARK 500 TRP B 165 168.59 174.88 REMARK 500 PHE B 272 -66.67 -129.02 REMARK 500 THR B 294 -74.88 47.70 REMARK 500 ASN B 295 72.29 -100.18 REMARK 500 ALA B 298 -98.60 -118.89 REMARK 500 SER B 324 -156.72 -105.83 REMARK 500 ALA B 331 70.06 -118.06 REMARK 500 GLU C 31 58.06 -105.55 REMARK 500 ARG C 108 -127.89 55.30 REMARK 500 GLU C 109 30.45 -98.72 REMARK 500 ASP C 140 -125.44 53.59 REMARK 500 TRP C 165 173.10 178.10 REMARK 500 PRO C 170 109.53 -58.79 REMARK 500 GLU C 227 -47.28 81.71 REMARK 500 HIS C 231 55.21 -92.20 REMARK 500 PHE C 272 -64.87 -128.23 REMARK 500 ALA C 298 -90.10 -116.86 REMARK 500 PRO C 322 45.42 -86.98 REMARK 500 SER C 324 -156.27 -86.62 REMARK 500 REMARK 500 REMARK: NULL DBREF1 9L4M A 1 352 UNP A0A1D8NJ72_YARLL DBREF2 9L4M A A0A1D8NJ72 1 352 DBREF1 9L4M B 1 352 UNP A0A1D8NJ72_YARLL DBREF2 9L4M B A0A1D8NJ72 1 352 DBREF1 9L4M C 1 352 UNP A0A1D8NJ72_YARLL DBREF2 9L4M C A0A1D8NJ72 1 352 SEQRES 1 A 352 MET ALA HIS LEU THR LYS GLU TYR TYR GLU PRO PHE HIS SEQRES 2 A 352 HIS ASP VAL ILE LEU GLY GLY LYS ARG TRP HIS TYR LEU SEQRES 3 A 352 ASP ILE PRO PRO GLU GLY LYS ASP ASN GLY ARG VAL LEU SEQRES 4 A 352 VAL LEU VAL HIS GLY PHE PRO ASP PHE TRP TYR GLY TRP SEQRES 5 A 352 ARG HIS GLN ILE PRO VAL PHE ARG LYS ARG GLY HIS ARG SEQRES 6 A 352 ILE ILE LEU PRO THR LEU MET GLY PHE PRO GLY SER GLU SEQRES 7 A 352 VAL PRO GLU PRO PRO ALA MET GLU GLU PHE GLU GLU ASN SEQRES 8 A 352 GLU ASP GLY ILE ASN ILE TYR THR GLU LEU GLY GLN GLU SEQRES 9 A 352 ASP ASP CYS ARG GLU LEU HIS PHE TYR GLY PHE LYS PHE SEQRES 10 A 352 PHE ALA ASP CYS MET ALA GLU LEU LEU LYS LYS LEU ASN SEQRES 11 A 352 ILE LYS SER ALA THR PHE LEU GLY HIS ASP TRP GLY ALA SEQRES 12 A 352 HIS TYR VAL PRO LYS VAL TRP ALA TYR HIS PRO GLU ILE SEQRES 13 A 352 VAL ASP ALA ILE SER SER ALA CYS TRP TYR TYR GLN VAL SEQRES 14 A 352 PRO GLU PRO GLU TRP VAL PRO LEU THR ASP PHE SER ASP SEQRES 15 A 352 LYS TRP PRO THR THR LYS TYR GLN LEU GLN PHE GLY GLY SEQRES 16 A 352 ASP ALA VAL ASN ASN ILE GLY PRO GLY MET ILE PRO PHE SEQRES 17 A 352 PHE LEU ARG ARG SER TYR THR VAL GLY ALA ASN PHE ASP SEQRES 18 A 352 GLY GLU PRO ASP PRO GLU ALA PRO MET HIS MET THR GLU SEQRES 19 A 352 GLU GLU PHE ALA VAL TYR GLU GLU HIS PHE SER LYS GLU SEQRES 20 A 352 LYS ARG SER LEU ALA GLY PRO PHE THR TYR TYR ARG SER SEQRES 21 A 352 ARG LYS LEU ASN TRP GLU GLN ASP LYS GLU ASN PHE LEU SEQRES 22 A 352 ASP LYS GLY ALA THR LYS LYS ASP LEU THR VAL ASN VAL SEQRES 23 A 352 PRO TYR LEU TYR ILE GLY SER THR ASN ASP ILE ALA LEU SEQRES 24 A 352 ILE PRO GLU MET SER MET HIS LEU ASP GLU TYR VAL GLU SEQRES 25 A 352 LYS GLY LYS LEU THR ARG GLU HIS VAL PRO THR SER HIS SEQRES 26 A 352 TRP ALA LEU PHE GLU ALA PRO ASP GLN ILE ASN LYS ILE SEQRES 27 A 352 TYR VAL ASP TRP LEU ASP LYS LEU ASP LYS THR SER LYS SEQRES 28 A 352 LEU SEQRES 1 B 352 MET ALA HIS LEU THR LYS GLU TYR TYR GLU PRO PHE HIS SEQRES 2 B 352 HIS ASP VAL ILE LEU GLY GLY LYS ARG TRP HIS TYR LEU SEQRES 3 B 352 ASP ILE PRO PRO GLU GLY LYS ASP ASN GLY ARG VAL LEU SEQRES 4 B 352 VAL LEU VAL HIS GLY PHE PRO ASP PHE TRP TYR GLY TRP SEQRES 5 B 352 ARG HIS GLN ILE PRO VAL PHE ARG LYS ARG GLY HIS ARG SEQRES 6 B 352 ILE ILE LEU PRO THR LEU MET GLY PHE PRO GLY SER GLU SEQRES 7 B 352 VAL PRO GLU PRO PRO ALA MET GLU GLU PHE GLU GLU ASN SEQRES 8 B 352 GLU ASP GLY ILE ASN ILE TYR THR GLU LEU GLY GLN GLU SEQRES 9 B 352 ASP ASP CYS ARG GLU LEU HIS PHE TYR GLY PHE LYS PHE SEQRES 10 B 352 PHE ALA ASP CYS MET ALA GLU LEU LEU LYS LYS LEU ASN SEQRES 11 B 352 ILE LYS SER ALA THR PHE LEU GLY HIS ASP TRP GLY ALA SEQRES 12 B 352 HIS TYR VAL PRO LYS VAL TRP ALA TYR HIS PRO GLU ILE SEQRES 13 B 352 VAL ASP ALA ILE SER SER ALA CYS TRP TYR TYR GLN VAL SEQRES 14 B 352 PRO GLU PRO GLU TRP VAL PRO LEU THR ASP PHE SER ASP SEQRES 15 B 352 LYS TRP PRO THR THR LYS TYR GLN LEU GLN PHE GLY GLY SEQRES 16 B 352 ASP ALA VAL ASN ASN ILE GLY PRO GLY MET ILE PRO PHE SEQRES 17 B 352 PHE LEU ARG ARG SER TYR THR VAL GLY ALA ASN PHE ASP SEQRES 18 B 352 GLY GLU PRO ASP PRO GLU ALA PRO MET HIS MET THR GLU SEQRES 19 B 352 GLU GLU PHE ALA VAL TYR GLU GLU HIS PHE SER LYS GLU SEQRES 20 B 352 LYS ARG SER LEU ALA GLY PRO PHE THR TYR TYR ARG SER SEQRES 21 B 352 ARG LYS LEU ASN TRP GLU GLN ASP LYS GLU ASN PHE LEU SEQRES 22 B 352 ASP LYS GLY ALA THR LYS LYS ASP LEU THR VAL ASN VAL SEQRES 23 B 352 PRO TYR LEU TYR ILE GLY SER THR ASN ASP ILE ALA LEU SEQRES 24 B 352 ILE PRO GLU MET SER MET HIS LEU ASP GLU TYR VAL GLU SEQRES 25 B 352 LYS GLY LYS LEU THR ARG GLU HIS VAL PRO THR SER HIS SEQRES 26 B 352 TRP ALA LEU PHE GLU ALA PRO ASP GLN ILE ASN LYS ILE SEQRES 27 B 352 TYR VAL ASP TRP LEU ASP LYS LEU ASP LYS THR SER LYS SEQRES 28 B 352 LEU SEQRES 1 C 352 MET ALA HIS LEU THR LYS GLU TYR TYR GLU PRO PHE HIS SEQRES 2 C 352 HIS ASP VAL ILE LEU GLY GLY LYS ARG TRP HIS TYR LEU SEQRES 3 C 352 ASP ILE PRO PRO GLU GLY LYS ASP ASN GLY ARG VAL LEU SEQRES 4 C 352 VAL LEU VAL HIS GLY PHE PRO ASP PHE TRP TYR GLY TRP SEQRES 5 C 352 ARG HIS GLN ILE PRO VAL PHE ARG LYS ARG GLY HIS ARG SEQRES 6 C 352 ILE ILE LEU PRO THR LEU MET GLY PHE PRO GLY SER GLU SEQRES 7 C 352 VAL PRO GLU PRO PRO ALA MET GLU GLU PHE GLU GLU ASN SEQRES 8 C 352 GLU ASP GLY ILE ASN ILE TYR THR GLU LEU GLY GLN GLU SEQRES 9 C 352 ASP ASP CYS ARG GLU LEU HIS PHE TYR GLY PHE LYS PHE SEQRES 10 C 352 PHE ALA ASP CYS MET ALA GLU LEU LEU LYS LYS LEU ASN SEQRES 11 C 352 ILE LYS SER ALA THR PHE LEU GLY HIS ASP TRP GLY ALA SEQRES 12 C 352 HIS TYR VAL PRO LYS VAL TRP ALA TYR HIS PRO GLU ILE SEQRES 13 C 352 VAL ASP ALA ILE SER SER ALA CYS TRP TYR TYR GLN VAL SEQRES 14 C 352 PRO GLU PRO GLU TRP VAL PRO LEU THR ASP PHE SER ASP SEQRES 15 C 352 LYS TRP PRO THR THR LYS TYR GLN LEU GLN PHE GLY GLY SEQRES 16 C 352 ASP ALA VAL ASN ASN ILE GLY PRO GLY MET ILE PRO PHE SEQRES 17 C 352 PHE LEU ARG ARG SER TYR THR VAL GLY ALA ASN PHE ASP SEQRES 18 C 352 GLY GLU PRO ASP PRO GLU ALA PRO MET HIS MET THR GLU SEQRES 19 C 352 GLU GLU PHE ALA VAL TYR GLU GLU HIS PHE SER LYS GLU SEQRES 20 C 352 LYS ARG SER LEU ALA GLY PRO PHE THR TYR TYR ARG SER SEQRES 21 C 352 ARG LYS LEU ASN TRP GLU GLN ASP LYS GLU ASN PHE LEU SEQRES 22 C 352 ASP LYS GLY ALA THR LYS LYS ASP LEU THR VAL ASN VAL SEQRES 23 C 352 PRO TYR LEU TYR ILE GLY SER THR ASN ASP ILE ALA LEU SEQRES 24 C 352 ILE PRO GLU MET SER MET HIS LEU ASP GLU TYR VAL GLU SEQRES 25 C 352 LYS GLY LYS LEU THR ARG GLU HIS VAL PRO THR SER HIS SEQRES 26 C 352 TRP ALA LEU PHE GLU ALA PRO ASP GLN ILE ASN LYS ILE SEQRES 27 C 352 TYR VAL ASP TRP LEU ASP LYS LEU ASP LYS THR SER LYS SEQRES 28 C 352 LEU HET GOL B 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *55(H2 O) HELIX 1 AA1 LYS A 6 PRO A 11 5 6 HELIX 2 AA2 PHE A 48 ARG A 53 5 6 HELIX 3 AA3 GLN A 55 GLY A 63 1 9 HELIX 4 AA4 GLU A 109 TYR A 113 5 5 HELIX 5 AA5 GLY A 114 LEU A 129 1 16 HELIX 6 AA6 ASP A 140 HIS A 153 1 14 HELIX 7 AA7 PRO A 176 TRP A 184 1 9 HELIX 8 AA8 PRO A 185 LYS A 188 5 4 HELIX 9 AA9 TYR A 189 GLY A 194 1 6 HELIX 10 AB1 ASP A 196 ILE A 201 1 6 HELIX 11 AB2 GLY A 202 GLY A 204 5 3 HELIX 12 AB3 MET A 205 THR A 215 1 11 HELIX 13 AB4 THR A 233 LYS A 246 1 14 HELIX 14 AB5 GLY A 253 ARG A 259 5 7 HELIX 15 AB6 SER A 260 PHE A 272 1 13 HELIX 16 AB7 LEU A 273 GLY A 276 5 4 HELIX 17 AB8 ILE A 300 MET A 305 5 6 HELIX 18 AB9 HIS A 306 VAL A 311 1 6 HELIX 19 AC1 TRP A 326 ALA A 331 1 6 HELIX 20 AC2 ALA A 331 THR A 349 1 19 HELIX 21 AC3 THR B 5 PRO B 11 5 7 HELIX 22 AC4 PHE B 48 ARG B 53 5 6 HELIX 23 AC5 GLN B 55 GLY B 63 1 9 HELIX 24 AC6 GLU B 109 TYR B 113 5 5 HELIX 25 AC7 GLY B 114 LEU B 129 1 16 HELIX 26 AC8 ASP B 140 HIS B 153 1 14 HELIX 27 AC9 PRO B 176 TRP B 184 1 9 HELIX 28 AD1 PRO B 185 THR B 187 5 3 HELIX 29 AD2 LYS B 188 GLY B 195 1 8 HELIX 30 AD3 ASP B 196 ILE B 201 1 6 HELIX 31 AD4 GLY B 202 GLY B 204 5 3 HELIX 32 AD5 MET B 205 THR B 215 1 11 HELIX 33 AD6 THR B 233 LYS B 246 1 14 HELIX 34 AD7 LEU B 251 THR B 256 1 6 HELIX 35 AD8 TYR B 257 ARG B 259 5 3 HELIX 36 AD9 SER B 260 PHE B 272 1 13 HELIX 37 AE1 ILE B 300 MET B 305 5 6 HELIX 38 AE2 HIS B 306 VAL B 311 1 6 HELIX 39 AE3 TRP B 326 ALA B 331 1 6 HELIX 40 AE4 ALA B 331 THR B 349 1 19 HELIX 41 AE5 MET C 1 PRO C 11 5 11 HELIX 42 AE6 PHE C 48 ARG C 53 5 6 HELIX 43 AE7 GLN C 55 GLY C 63 1 9 HELIX 44 AE8 GLU C 109 TYR C 113 5 5 HELIX 45 AE9 GLY C 114 LEU C 129 1 16 HELIX 46 AF1 ASP C 140 VAL C 146 1 7 HELIX 47 AF2 VAL C 146 HIS C 153 1 8 HELIX 48 AF3 PRO C 176 TRP C 184 1 9 HELIX 49 AF4 PRO C 185 THR C 187 5 3 HELIX 50 AF5 LYS C 188 GLY C 194 1 7 HELIX 51 AF6 ASP C 196 ILE C 201 1 6 HELIX 52 AF7 GLY C 202 GLY C 204 5 3 HELIX 53 AF8 MET C 205 THR C 215 1 11 HELIX 54 AF9 THR C 233 PHE C 244 1 12 HELIX 55 AG1 GLY C 253 ARG C 259 5 7 HELIX 56 AG2 SER C 260 PHE C 272 1 13 HELIX 57 AG3 ILE C 300 ASP C 308 5 9 HELIX 58 AG4 TRP C 326 ALA C 331 1 6 HELIX 59 AG5 ALA C 331 THR C 349 1 19 SHEET 1 AA1 8 HIS A 13 LEU A 18 0 SHEET 2 AA1 8 LYS A 21 ILE A 28 -1 O TRP A 23 N VAL A 16 SHEET 3 AA1 8 ILE A 66 PRO A 69 -1 O ILE A 66 N ILE A 28 SHEET 4 AA1 8 LEU A 39 VAL A 42 1 N LEU A 39 O ILE A 67 SHEET 5 AA1 8 ALA A 134 HIS A 139 1 O LEU A 137 N VAL A 40 SHEET 6 AA1 8 VAL A 157 ALA A 163 1 O ALA A 163 N GLY A 138 SHEET 7 AA1 8 TYR A 288 SER A 293 1 O LEU A 289 N SER A 162 SHEET 8 AA1 8 LEU A 316 VAL A 321 1 O THR A 317 N TYR A 290 SHEET 1 AA2 8 HIS B 13 LEU B 18 0 SHEET 2 AA2 8 LYS B 21 ILE B 28 -1 O TRP B 23 N VAL B 16 SHEET 3 AA2 8 ARG B 65 PRO B 69 -1 O ILE B 66 N ILE B 28 SHEET 4 AA2 8 VAL B 38 VAL B 42 1 N LEU B 39 O ARG B 65 SHEET 5 AA2 8 ALA B 134 HIS B 139 1 O THR B 135 N VAL B 38 SHEET 6 AA2 8 VAL B 157 ALA B 163 1 O ALA B 159 N PHE B 136 SHEET 7 AA2 8 TYR B 288 GLY B 292 1 O LEU B 289 N SER B 162 SHEET 8 AA2 8 LEU B 316 HIS B 320 1 O THR B 317 N TYR B 288 SHEET 1 AA3 8 HIS C 13 LEU C 18 0 SHEET 2 AA3 8 LYS C 21 ILE C 28 -1 O TRP C 23 N VAL C 16 SHEET 3 AA3 8 ILE C 66 PRO C 69 -1 O ILE C 66 N ILE C 28 SHEET 4 AA3 8 LEU C 39 VAL C 42 1 N LEU C 39 O ILE C 67 SHEET 5 AA3 8 ALA C 134 HIS C 139 1 O LEU C 137 N VAL C 40 SHEET 6 AA3 8 VAL C 157 ALA C 163 1 O ASP C 158 N ALA C 134 SHEET 7 AA3 8 TYR C 288 SER C 293 1 O LEU C 289 N ILE C 160 SHEET 8 AA3 8 LEU C 316 VAL C 321 1 O VAL C 321 N GLY C 292 CISPEP 1 PHE A 45 PRO A 46 0 -17.68 CISPEP 2 PHE B 45 PRO B 46 0 -8.15 CISPEP 3 PHE C 45 PRO C 46 0 -17.46 CRYST1 92.330 58.300 217.490 90.00 94.64 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010831 0.000000 0.000879 0.00000 SCALE2 0.000000 0.017153 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004613 0.00000 CONECT 8096 8097 8098 CONECT 8097 8096 CONECT 8098 8096 8099 8100 CONECT 8099 8098 CONECT 8100 8098 8101 CONECT 8101 8100 MASTER 438 0 1 59 24 0 0 6 8153 3 6 84 END