data_9L6Y # _entry.id 9L6Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9L6Y pdb_00009l6y 10.2210/pdb9l6y/pdb WWPDB D_1300055072 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-04-02 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9L6Y _pdbx_database_status.recvd_initial_deposition_date 2024-12-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email kakuta@agr.kyushu-u.ac.jp _pdbx_contact_author.name_first Yoshimitsu _pdbx_contact_author.name_last Kakuta _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0781-2074 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Teramoto, T.' 1 0000-0003-1555-5394 'Nakashima, M.' 2 ? 'Fukunaga, K.' 3 ? 'Yokobayashi, Y.' 4 ? 'Kakuta, Y.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 53 _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural insights into lab-coevolved RNA-RBP pairs and applications of synthetic riboswitches in cell-free system.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkaf212 _citation.pdbx_database_id_PubMed 40119732 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fukunaga, K.' 1 0000-0002-4259-4359 primary 'Teramoto, T.' 2 0000-0003-1555-5394 primary 'Nakashima, M.' 3 ? primary 'Ohtani, T.' 4 ? primary 'Katsuki, R.' 5 ? primary 'Matsuura, T.' 6 0000-0003-1015-6781 primary 'Yokobayashi, Y.' 7 0000-0002-2417-1934 primary 'Kakuta, Y.' 8 0000-0002-0781-2074 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Large ribosomal subunit protein eL8' 13100.113 2 ? ? ? ? 2 polymer syn 'CS2 RNA' 10655.442 2 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 5 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '50S ribosomal protein L7Ae,Ribosomal protein L8e' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SYVRFEVPEDMQNEALSLLEKVRESGKVKKGTNSTTLAVSRGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKN DLGRAVGRVYPGASAAIINEGELRKELGSLVEKIKGLQK ; ;SYVRFEVPEDMQNEALSLLEKVRESGKVKKGTNSTTLAVSRGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKN DLGRAVGRVYPGASAAIINEGELRKELGSLVEKIKGLQK ; A,C ? 2 polyribonucleotide no no GGAUGCAGAGAACGAAAGUUCCAUGACGCAUCC GGAUGCAGAGAACGAAAGUUCCAUGACGCAUCC B,D ? # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name 'CALCIUM ION' _pdbx_entity_nonpoly.comp_id CA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 TYR n 1 3 VAL n 1 4 ARG n 1 5 PHE n 1 6 GLU n 1 7 VAL n 1 8 PRO n 1 9 GLU n 1 10 ASP n 1 11 MET n 1 12 GLN n 1 13 ASN n 1 14 GLU n 1 15 ALA n 1 16 LEU n 1 17 SER n 1 18 LEU n 1 19 LEU n 1 20 GLU n 1 21 LYS n 1 22 VAL n 1 23 ARG n 1 24 GLU n 1 25 SER n 1 26 GLY n 1 27 LYS n 1 28 VAL n 1 29 LYS n 1 30 LYS n 1 31 GLY n 1 32 THR n 1 33 ASN n 1 34 SER n 1 35 THR n 1 36 THR n 1 37 LEU n 1 38 ALA n 1 39 VAL n 1 40 SER n 1 41 ARG n 1 42 GLY n 1 43 LEU n 1 44 ALA n 1 45 LYS n 1 46 LEU n 1 47 VAL n 1 48 TYR n 1 49 ILE n 1 50 ALA n 1 51 GLU n 1 52 ASP n 1 53 VAL n 1 54 ASP n 1 55 PRO n 1 56 PRO n 1 57 GLU n 1 58 ILE n 1 59 VAL n 1 60 ALA n 1 61 HIS n 1 62 LEU n 1 63 PRO n 1 64 LEU n 1 65 LEU n 1 66 CYS n 1 67 GLU n 1 68 GLU n 1 69 LYS n 1 70 ASN n 1 71 VAL n 1 72 PRO n 1 73 TYR n 1 74 ILE n 1 75 TYR n 1 76 VAL n 1 77 LYS n 1 78 SER n 1 79 LYS n 1 80 ASN n 1 81 ASP n 1 82 LEU n 1 83 GLY n 1 84 ARG n 1 85 ALA n 1 86 VAL n 1 87 GLY n 1 88 ARG n 1 89 VAL n 1 90 TYR n 1 91 PRO n 1 92 GLY n 1 93 ALA n 1 94 SER n 1 95 ALA n 1 96 ALA n 1 97 ILE n 1 98 ILE n 1 99 ASN n 1 100 GLU n 1 101 GLY n 1 102 GLU n 1 103 LEU n 1 104 ARG n 1 105 LYS n 1 106 GLU n 1 107 LEU n 1 108 GLY n 1 109 SER n 1 110 LEU n 1 111 VAL n 1 112 GLU n 1 113 LYS n 1 114 ILE n 1 115 LYS n 1 116 GLY n 1 117 LEU n 1 118 GLN n 1 119 LYS n 2 1 G n 2 2 G n 2 3 A n 2 4 U n 2 5 G n 2 6 C n 2 7 A n 2 8 G n 2 9 A n 2 10 G n 2 11 A n 2 12 A n 2 13 C n 2 14 G n 2 15 A n 2 16 A n 2 17 A n 2 18 G n 2 19 U n 2 20 U n 2 21 C n 2 22 C n 2 23 A n 2 24 U n 2 25 G n 2 26 A n 2 27 C n 2 28 G n 2 29 C n 2 30 A n 2 31 U n 2 32 C n 2 33 C n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 119 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rpl7ae, AF_0764' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 224325 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 33 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 ? ? ? A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ASP 10 10 10 ASP ASP A . n A 1 11 MET 11 11 11 MET MET A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 VAL 28 28 28 VAL VAL A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 SER 34 34 34 SER SER A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 VAL 39 39 39 VAL VAL A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 VAL 53 53 53 VAL VAL A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 PRO 56 56 56 PRO PRO A . n A 1 57 GLU 57 57 57 GLU GLU A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 HIS 61 61 61 HIS HIS A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 PRO 63 63 63 PRO PRO A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 CYS 66 66 66 CYS CYS A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 PRO 72 72 72 PRO PRO A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 ILE 74 74 74 ILE ILE A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 VAL 89 89 89 VAL VAL A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 SER 94 94 94 SER SER A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 GLU 102 102 102 GLU GLU A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ARG 104 104 104 ARG ARG A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 LEU 110 110 110 LEU LEU A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 LYS 113 113 113 LYS LYS A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 LYS 119 119 ? ? ? A . n B 2 1 G 1 1 1 G G B . n B 2 2 G 2 2 2 G G B . n B 2 3 A 3 3 3 A A B . n B 2 4 U 4 4 4 U U B . n B 2 5 G 5 5 5 G G B . n B 2 6 C 6 6 6 C C B . n B 2 7 A 7 7 7 A A B . n B 2 8 G 8 8 8 G G B . n B 2 9 A 9 9 9 A A B . n B 2 10 G 10 10 10 G G B . n B 2 11 A 11 11 11 A A B . n B 2 12 A 12 12 12 A A B . n B 2 13 C 13 13 13 C C B . n B 2 14 G 14 14 14 G G B . n B 2 15 A 15 15 15 A A B . n B 2 16 A 16 16 16 A A B . n B 2 17 A 17 17 17 A A B . n B 2 18 G 18 18 18 G G B . n B 2 19 U 19 19 19 U U B . n B 2 20 U 20 20 20 U U B . n B 2 21 C 21 21 21 C C B . n B 2 22 C 22 22 22 C C B . n B 2 23 A 23 23 23 A A B . n B 2 24 U 24 24 24 U U B . n B 2 25 G 25 25 25 G G B . n B 2 26 A 26 26 26 A A B . n B 2 27 C 27 27 27 C C B . n B 2 28 G 28 28 28 G G B . n B 2 29 C 29 29 29 C C B . n B 2 30 A 30 30 30 A A B . n B 2 31 U 31 31 31 U U B . n B 2 32 C 32 32 32 C C B . n B 2 33 C 33 33 33 C C B . n C 1 1 SER 1 1 ? ? ? C . n C 1 2 TYR 2 2 2 TYR TYR C . n C 1 3 VAL 3 3 3 VAL VAL C . n C 1 4 ARG 4 4 4 ARG ARG C . n C 1 5 PHE 5 5 5 PHE PHE C . n C 1 6 GLU 6 6 6 GLU GLU C . n C 1 7 VAL 7 7 7 VAL VAL C . n C 1 8 PRO 8 8 8 PRO PRO C . n C 1 9 GLU 9 9 9 GLU GLU C . n C 1 10 ASP 10 10 10 ASP ASP C . n C 1 11 MET 11 11 11 MET MET C . n C 1 12 GLN 12 12 12 GLN GLN C . n C 1 13 ASN 13 13 13 ASN ASN C . n C 1 14 GLU 14 14 14 GLU GLU C . n C 1 15 ALA 15 15 15 ALA ALA C . n C 1 16 LEU 16 16 16 LEU LEU C . n C 1 17 SER 17 17 17 SER SER C . n C 1 18 LEU 18 18 18 LEU LEU C . n C 1 19 LEU 19 19 19 LEU LEU C . n C 1 20 GLU 20 20 20 GLU GLU C . n C 1 21 LYS 21 21 21 LYS LYS C . n C 1 22 VAL 22 22 22 VAL VAL C . n C 1 23 ARG 23 23 23 ARG ARG C . n C 1 24 GLU 24 24 24 GLU GLU C . n C 1 25 SER 25 25 25 SER SER C . n C 1 26 GLY 26 26 26 GLY GLY C . n C 1 27 LYS 27 27 27 LYS LYS C . n C 1 28 VAL 28 28 28 VAL VAL C . n C 1 29 LYS 29 29 29 LYS LYS C . n C 1 30 LYS 30 30 30 LYS LYS C . n C 1 31 GLY 31 31 31 GLY GLY C . n C 1 32 THR 32 32 32 THR THR C . n C 1 33 ASN 33 33 33 ASN ASN C . n C 1 34 SER 34 34 34 SER SER C . n C 1 35 THR 35 35 35 THR THR C . n C 1 36 THR 36 36 36 THR THR C . n C 1 37 LEU 37 37 37 LEU LEU C . n C 1 38 ALA 38 38 38 ALA ALA C . n C 1 39 VAL 39 39 39 VAL VAL C . n C 1 40 SER 40 40 40 SER SER C . n C 1 41 ARG 41 41 41 ARG ARG C . n C 1 42 GLY 42 42 42 GLY GLY C . n C 1 43 LEU 43 43 43 LEU LEU C . n C 1 44 ALA 44 44 44 ALA ALA C . n C 1 45 LYS 45 45 45 LYS LYS C . n C 1 46 LEU 46 46 46 LEU LEU C . n C 1 47 VAL 47 47 47 VAL VAL C . n C 1 48 TYR 48 48 48 TYR TYR C . n C 1 49 ILE 49 49 49 ILE ILE C . n C 1 50 ALA 50 50 50 ALA ALA C . n C 1 51 GLU 51 51 51 GLU GLU C . n C 1 52 ASP 52 52 52 ASP ASP C . n C 1 53 VAL 53 53 53 VAL VAL C . n C 1 54 ASP 54 54 54 ASP ASP C . n C 1 55 PRO 55 55 55 PRO PRO C . n C 1 56 PRO 56 56 56 PRO PRO C . n C 1 57 GLU 57 57 57 GLU GLU C . n C 1 58 ILE 58 58 58 ILE ILE C . n C 1 59 VAL 59 59 59 VAL VAL C . n C 1 60 ALA 60 60 60 ALA ALA C . n C 1 61 HIS 61 61 61 HIS HIS C . n C 1 62 LEU 62 62 62 LEU LEU C . n C 1 63 PRO 63 63 63 PRO PRO C . n C 1 64 LEU 64 64 64 LEU LEU C . n C 1 65 LEU 65 65 65 LEU LEU C . n C 1 66 CYS 66 66 66 CYS CYS C . n C 1 67 GLU 67 67 67 GLU GLU C . n C 1 68 GLU 68 68 68 GLU GLU C . n C 1 69 LYS 69 69 69 LYS LYS C . n C 1 70 ASN 70 70 70 ASN ASN C . n C 1 71 VAL 71 71 71 VAL VAL C . n C 1 72 PRO 72 72 72 PRO PRO C . n C 1 73 TYR 73 73 73 TYR TYR C . n C 1 74 ILE 74 74 74 ILE ILE C . n C 1 75 TYR 75 75 75 TYR TYR C . n C 1 76 VAL 76 76 76 VAL VAL C . n C 1 77 LYS 77 77 77 LYS LYS C . n C 1 78 SER 78 78 78 SER SER C . n C 1 79 LYS 79 79 79 LYS LYS C . n C 1 80 ASN 80 80 80 ASN ASN C . n C 1 81 ASP 81 81 81 ASP ASP C . n C 1 82 LEU 82 82 82 LEU LEU C . n C 1 83 GLY 83 83 83 GLY GLY C . n C 1 84 ARG 84 84 84 ARG ARG C . n C 1 85 ALA 85 85 85 ALA ALA C . n C 1 86 VAL 86 86 86 VAL VAL C . n C 1 87 GLY 87 87 87 GLY GLY C . n C 1 88 ARG 88 88 88 ARG ARG C . n C 1 89 VAL 89 89 89 VAL VAL C . n C 1 90 TYR 90 90 90 TYR TYR C . n C 1 91 PRO 91 91 91 PRO PRO C . n C 1 92 GLY 92 92 92 GLY GLY C . n C 1 93 ALA 93 93 93 ALA ALA C . n C 1 94 SER 94 94 94 SER SER C . n C 1 95 ALA 95 95 95 ALA ALA C . n C 1 96 ALA 96 96 96 ALA ALA C . n C 1 97 ILE 97 97 97 ILE ILE C . n C 1 98 ILE 98 98 98 ILE ILE C . n C 1 99 ASN 99 99 99 ASN ASN C . n C 1 100 GLU 100 100 100 GLU GLU C . n C 1 101 GLY 101 101 101 GLY GLY C . n C 1 102 GLU 102 102 102 GLU GLU C . n C 1 103 LEU 103 103 103 LEU LEU C . n C 1 104 ARG 104 104 104 ARG ARG C . n C 1 105 LYS 105 105 105 LYS LYS C . n C 1 106 GLU 106 106 106 GLU GLU C . n C 1 107 LEU 107 107 107 LEU LEU C . n C 1 108 GLY 108 108 108 GLY GLY C . n C 1 109 SER 109 109 109 SER SER C . n C 1 110 LEU 110 110 110 LEU LEU C . n C 1 111 VAL 111 111 111 VAL VAL C . n C 1 112 GLU 112 112 112 GLU GLU C . n C 1 113 LYS 113 113 113 LYS LYS C . n C 1 114 ILE 114 114 114 ILE ILE C . n C 1 115 LYS 115 115 115 LYS LYS C . n C 1 116 GLY 116 116 116 GLY GLY C . n C 1 117 LEU 117 117 117 LEU LEU C . n C 1 118 GLN 118 118 ? ? ? C . n C 1 119 LYS 119 119 ? ? ? C . n D 2 1 G 1 1 ? ? ? D . n D 2 2 G 2 2 2 G G D . n D 2 3 A 3 3 3 A A D . n D 2 4 U 4 4 4 U U D . n D 2 5 G 5 5 5 G G D . n D 2 6 C 6 6 6 C C D . n D 2 7 A 7 7 7 A A D . n D 2 8 G 8 8 8 G G D . n D 2 9 A 9 9 9 A A D . n D 2 10 G 10 10 10 G G D . n D 2 11 A 11 11 11 A A D . n D 2 12 A 12 12 12 A A D . n D 2 13 C 13 13 13 C C D . n D 2 14 G 14 14 14 G G D . n D 2 15 A 15 15 15 A A D . n D 2 16 A 16 16 16 A A D . n D 2 17 A 17 17 17 A A D . n D 2 18 G 18 18 18 G G D . n D 2 19 U 19 19 19 U U D . n D 2 20 U 20 20 20 U U D . n D 2 21 C 21 21 21 C C D . n D 2 22 C 22 22 22 C C D . n D 2 23 A 23 23 23 A A D . n D 2 24 U 24 24 24 U U D . n D 2 25 G 25 25 25 G G D . n D 2 26 A 26 26 26 A A D . n D 2 27 C 27 27 27 C C D . n D 2 28 G 28 28 28 G G D . n D 2 29 C 29 29 29 C C D . n D 2 30 A 30 30 30 A A D . n D 2 31 U 31 31 31 U U D . n D 2 32 C 32 32 32 C C D . n D 2 33 C 33 33 ? ? ? D . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id CA _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id CA _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA 1 101 1 CA CA B . F 3 CA 1 102 4 CA CA B . G 3 CA 1 101 2 CA CA D . H 3 CA 1 102 3 CA CA D . I 3 CA 1 103 5 CA CA D . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 6 ? CG ? A GLU 6 CG 2 1 Y 1 A GLU 6 ? CD ? A GLU 6 CD 3 1 Y 1 A GLU 6 ? OE1 ? A GLU 6 OE1 4 1 Y 1 A GLU 6 ? OE2 ? A GLU 6 OE2 5 1 Y 1 C GLU 6 ? CG ? C GLU 6 CG 6 1 Y 1 C GLU 6 ? CD ? C GLU 6 CD 7 1 Y 1 C GLU 6 ? OE1 ? C GLU 6 OE1 8 1 Y 1 C GLU 6 ? OE2 ? C GLU 6 OE2 # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 106.39 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9L6Y _cell.details ? _cell.formula_units_Z ? _cell.length_a 56.300 _cell.length_a_esd ? _cell.length_b 55.280 _cell.length_b_esd ? _cell.length_c 83.050 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9L6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9L6Y _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.61 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 52.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '40% PEG300, 100 mM Sodium cacodylate/HCl, pH 6.5, 200 mM Calcium acetate' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-05-30 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL45XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL45XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9L6Y _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.12 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8762 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.0 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.13 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.17 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.993 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 3.12 _reflns_shell.d_res_low 3.30 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.44 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1433 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 1.128 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.615 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9L6Y _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.12 _refine.ls_d_res_low 45.42 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8745 _refine.ls_number_reflns_R_free 877 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.12 _refine.ls_percent_reflns_R_free 10.03 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2237 _refine.ls_R_factor_R_free 0.2572 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2199 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4BW0 _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 29.13 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.44 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1791 _refine_hist.pdbx_number_atoms_nucleic_acid 1372 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 3168 _refine_hist.d_res_high 3.12 _refine_hist.d_res_low 45.42 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 ? ? ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.756 ? ? ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.431 ? 1014 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.043 ? 606 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 378 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 3.12 3.32 . . 146 1321 99.00 . . . . 0.3169 . . . . . . . . . . . 0.3506 'X-RAY DIFFRACTION' 3.32 3.57 . . 141 1303 99.00 . . . . 0.2788 . . . . . . . . . . . 0.3447 'X-RAY DIFFRACTION' 3.57 3.93 . . 150 1314 99.00 . . . . 0.2369 . . . . . . . . . . . 0.3189 'X-RAY DIFFRACTION' 3.93 4.50 . . 145 1296 98.00 . . . . 0.1982 . . . . . . . . . . . 0.2490 'X-RAY DIFFRACTION' 4.50 5.67 . . 146 1318 98.00 . . . . 0.1949 . . . . . . . . . . . 0.2194 'X-RAY DIFFRACTION' 5.67 45.42 . . 149 1316 96.00 . . . . 0.2016 . . . . . . . . . . . 0.2147 # _struct.entry_id 9L6Y _struct.title 'Crystal structure of the L7Ae derivative protein LS12 in complex with its co-evolved target CS2 RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9L6Y _struct_keywords.text 'Protein-RNA complex, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RL7A_ARCFU O29494 ? 1 ;YVRFEVPEDMQNEALSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKND LGRAVGIEVPCASAAIINEGELRKELGSLVEKIKGLQK ; 2 2 PDB 9L6Y 9L6Y ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9L6Y A 2 ? 119 ? O29494 2 ? 119 ? 2 119 2 2 9L6Y B 1 ? 33 ? 9L6Y 1 ? 33 ? 1 33 3 1 9L6Y C 2 ? 119 ? O29494 2 ? 119 ? 2 119 4 2 9L6Y D 1 ? 33 ? 9L6Y 1 ? 33 ? 1 33 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9L6Y SER A 1 ? UNP O29494 ? ? 'expression tag' 1 1 1 9L6Y SER A 34 ? UNP O29494 GLU 34 'engineered mutation' 34 2 1 9L6Y LEU A 37 ? UNP O29494 LYS 37 'engineered mutation' 37 3 1 9L6Y SER A 40 ? UNP O29494 GLU 40 'engineered mutation' 40 4 1 9L6Y ARG A 88 ? UNP O29494 ILE 88 'engineered mutation' 88 5 1 9L6Y VAL A 89 ? UNP O29494 GLU 89 'engineered mutation' 89 6 1 9L6Y TYR A 90 ? UNP O29494 VAL 90 'engineered mutation' 90 7 1 9L6Y GLY A 92 ? UNP O29494 CYS 92 'engineered mutation' 92 8 3 9L6Y SER C 1 ? UNP O29494 ? ? 'expression tag' 1 9 3 9L6Y SER C 34 ? UNP O29494 GLU 34 'engineered mutation' 34 10 3 9L6Y LEU C 37 ? UNP O29494 LYS 37 'engineered mutation' 37 11 3 9L6Y SER C 40 ? UNP O29494 GLU 40 'engineered mutation' 40 12 3 9L6Y ARG C 88 ? UNP O29494 ILE 88 'engineered mutation' 88 13 3 9L6Y VAL C 89 ? UNP O29494 GLU 89 'engineered mutation' 89 14 3 9L6Y TYR C 90 ? UNP O29494 VAL 90 'engineered mutation' 90 15 3 9L6Y GLY C 92 ? UNP O29494 CYS 92 'engineered mutation' 92 16 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1380 ? 1 MORE -24 ? 1 'SSA (A^2)' 11070 ? 2 'ABSA (A^2)' 1380 ? 2 MORE -25 ? 2 'SSA (A^2)' 10790 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 8 ? GLY A 26 ? PRO A 8 GLY A 26 1 ? 19 HELX_P HELX_P2 AA2 GLY A 31 ? ARG A 41 ? GLY A 31 ARG A 41 1 ? 11 HELX_P HELX_P3 AA3 PRO A 55 ? VAL A 59 ? PRO A 55 VAL A 59 5 ? 5 HELX_P HELX_P4 AA4 HIS A 61 ? ASN A 70 ? HIS A 61 ASN A 70 1 ? 10 HELX_P HELX_P5 AA5 LYS A 79 ? GLY A 83 ? LYS A 79 GLY A 83 5 ? 5 HELX_P HELX_P6 AA6 LEU A 103 ? LEU A 117 ? LEU A 103 LEU A 117 1 ? 15 HELX_P HELX_P7 AA7 ASP C 10 ? VAL C 22 ? ASP C 10 VAL C 22 1 ? 13 HELX_P HELX_P8 AA8 GLY C 31 ? ARG C 41 ? GLY C 31 ARG C 41 1 ? 11 HELX_P HELX_P9 AA9 PRO C 55 ? VAL C 59 ? PRO C 55 VAL C 59 5 ? 5 HELX_P HELX_P10 AB1 HIS C 61 ? ASN C 70 ? HIS C 61 ASN C 70 1 ? 10 HELX_P HELX_P11 AB2 SER C 78 ? ALA C 85 ? SER C 78 ALA C 85 1 ? 8 HELX_P HELX_P12 AB3 LEU C 103 ? LEU C 117 ? LEU C 103 LEU C 117 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B A 11 OP2 ? ? ? 1_555 E CA . CA ? ? B A 11 B CA 101 1_555 ? ? ? ? ? ? ? 2.493 ? ? metalc2 metalc ? ? D A 11 OP2 ? ? ? 1_555 G CA . CA ? ? D A 11 D CA 101 1_555 ? ? ? ? ? ? ? 2.543 ? ? metalc3 metalc ? ? D G 18 OP2 ? ? ? 1_555 H CA . CA ? ? D G 18 D CA 102 1_555 ? ? ? ? ? ? ? 2.645 ? ? hydrog1 hydrog ? ? B G 1 N1 ? ? ? 1_555 B C 33 N3 ? ? B G 1 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B G 1 N2 ? ? ? 1_555 B C 33 O2 ? ? B G 1 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B G 1 O6 ? ? ? 1_555 B C 33 N4 ? ? B G 1 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B G 2 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B G 2 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B G 2 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 2 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N1 ? ? ? 1_555 B U 31 N3 ? ? B A 3 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B A 3 N6 ? ? ? 1_555 B U 31 O4 ? ? B A 3 B U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B U 4 N3 ? ? ? 1_555 B A 30 N1 ? ? B U 4 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B U 4 O4 ? ? ? 1_555 B A 30 N6 ? ? B U 4 B A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B G 5 N1 ? ? ? 1_555 B C 29 N3 ? ? B G 5 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B G 5 N2 ? ? ? 1_555 B C 29 O2 ? ? B G 5 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B G 5 O6 ? ? ? 1_555 B C 29 N4 ? ? B G 5 B C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B C 6 N3 ? ? ? 1_555 B G 28 N1 ? ? B C 6 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B C 6 N4 ? ? ? 1_555 B G 28 O6 ? ? B C 6 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B C 6 O2 ? ? ? 1_555 B G 28 N2 ? ? B C 6 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B A 7 N1 ? ? ? 1_555 B C 27 N4 ? ? B A 7 B C 27 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog18 hydrog ? ? B G 8 N2 ? ? ? 1_555 B A 26 N7 ? ? B G 8 B A 26 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog19 hydrog ? ? B A 9 N6 ? ? ? 1_555 B G 25 N3 ? ? B A 9 B G 25 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? B A 9 N7 ? ? ? 1_555 B G 25 N2 ? ? B A 9 B G 25 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? B G 10 N1 ? ? ? 1_555 B C 21 N3 ? ? B G 10 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B G 10 N2 ? ? ? 1_555 B C 21 O2 ? ? B G 10 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B G 10 O6 ? ? ? 1_555 B C 21 N4 ? ? B G 10 B C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B G 10 N2 ? ? ? 1_555 B A 26 N3 ? ? B G 10 B A 26 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog25 hydrog ? ? B A 11 N1 ? ? ? 1_555 B U 20 N3 ? ? B A 11 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B A 11 N6 ? ? ? 1_555 B U 20 O4 ? ? B A 11 B U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B A 12 N1 ? ? ? 1_555 B U 19 N3 ? ? B A 12 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B A 12 N6 ? ? ? 1_555 B U 19 O4 ? ? B A 12 B U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B C 13 N3 ? ? ? 1_555 B G 18 N1 ? ? B C 13 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B C 13 N4 ? ? ? 1_555 B G 18 O6 ? ? B C 13 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B C 13 O2 ? ? ? 1_555 B G 18 N2 ? ? B C 13 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? D G 2 N1 ? ? ? 1_555 D C 32 N3 ? ? D G 2 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? D G 2 N2 ? ? ? 1_555 D C 32 O2 ? ? D G 2 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? D G 2 O6 ? ? ? 1_555 D C 32 N4 ? ? D G 2 D C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? D A 3 N1 ? ? ? 1_555 D U 31 N3 ? ? D A 3 D U 31 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog36 hydrog ? ? D U 4 N3 ? ? ? 1_555 D A 30 N1 ? ? D U 4 D A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? D U 4 O4 ? ? ? 1_555 D A 30 N6 ? ? D U 4 D A 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? D G 5 N1 ? ? ? 1_555 D C 29 N3 ? ? D G 5 D C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? D G 5 N2 ? ? ? 1_555 D C 29 O2 ? ? D G 5 D C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? D G 5 O6 ? ? ? 1_555 D C 29 N4 ? ? D G 5 D C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? D C 6 N3 ? ? ? 1_555 D G 28 N1 ? ? D C 6 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? D C 6 N4 ? ? ? 1_555 D G 28 O6 ? ? D C 6 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? D C 6 O2 ? ? ? 1_555 D G 28 N2 ? ? D C 6 D G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? D A 7 N1 ? ? ? 1_555 D C 27 N4 ? ? D A 7 D C 27 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog45 hydrog ? ? D G 8 N2 ? ? ? 1_555 D A 26 N7 ? ? D G 8 D A 26 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog46 hydrog ? ? D A 9 N6 ? ? ? 1_555 D G 25 N3 ? ? D A 9 D G 25 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog47 hydrog ? ? D A 9 N7 ? ? ? 1_555 D G 25 N2 ? ? D A 9 D G 25 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog48 hydrog ? ? D G 10 N1 ? ? ? 1_555 D C 21 N3 ? ? D G 10 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? D G 10 N2 ? ? ? 1_555 D C 21 O2 ? ? D G 10 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? D G 10 O6 ? ? ? 1_555 D C 21 N4 ? ? D G 10 D C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? D G 10 N2 ? ? ? 1_555 D A 26 N3 ? ? D G 10 D A 26 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog52 hydrog ? ? D A 11 N1 ? ? ? 1_555 D U 20 N3 ? ? D A 11 D U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? D A 11 N6 ? ? ? 1_555 D U 20 O4 ? ? D A 11 D U 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? D A 12 N1 ? ? ? 1_555 D U 19 N3 ? ? D A 12 D U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? D A 12 N6 ? ? ? 1_555 D U 19 O4 ? ? D A 12 D U 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? D C 13 N3 ? ? ? 1_555 D G 18 N1 ? ? D C 13 D G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? D C 13 N4 ? ? ? 1_555 D G 18 O6 ? ? D C 13 D G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? D C 13 O2 ? ? ? 1_555 D G 18 N2 ? ? D C 13 D G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ASP 54 A . ? ASP 54 A PRO 55 A ? PRO 55 A 1 1.80 2 ASP 54 C . ? ASP 54 C PRO 55 C ? PRO 55 C 1 1.12 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 27 ? LYS A 30 ? LYS A 27 LYS A 30 AA1 2 SER A 94 ? ASN A 99 ? SER A 94 ASN A 99 AA1 3 LEU A 46 ? ALA A 50 ? LEU A 46 ALA A 50 AA1 4 TYR A 73 ? VAL A 76 ? TYR A 73 VAL A 76 AA2 1 LYS C 27 ? LYS C 30 ? LYS C 27 LYS C 30 AA2 2 SER C 94 ? ASN C 99 ? SER C 94 ASN C 99 AA2 3 LEU C 46 ? ALA C 50 ? LEU C 46 ALA C 50 AA2 4 TYR C 73 ? VAL C 76 ? TYR C 73 VAL C 76 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 29 ? N LYS A 29 O ALA A 96 ? O ALA A 96 AA1 2 3 O ILE A 97 ? O ILE A 97 N LEU A 46 ? N LEU A 46 AA1 3 4 N ILE A 49 ? N ILE A 49 O VAL A 76 ? O VAL A 76 AA2 1 2 N LYS C 29 ? N LYS C 29 O ALA C 96 ? O ALA C 96 AA2 2 3 O ILE C 97 ? O ILE C 97 N LEU C 46 ? N LEU C 46 AA2 3 4 N ILE C 49 ? N ILE C 49 O VAL C 76 ? O VAL C 76 # _pdbx_entry_details.entry_id 9L6Y _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C2 _pdbx_validate_rmsd_angle.auth_asym_id_1 D _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 6 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N1 _pdbx_validate_rmsd_angle.auth_asym_id_2 D _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 6 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_3 D _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 6 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 125.46 _pdbx_validate_rmsd_angle.angle_target_value 118.80 _pdbx_validate_rmsd_angle.angle_deviation 6.66 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.10 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 52 ? ? -100.07 48.55 2 1 GLU C 24 ? ? -93.91 -61.30 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 1 ? A SER 1 2 1 Y 1 A LYS 119 ? A LYS 119 3 1 Y 1 C SER 1 ? C SER 1 4 1 Y 1 C GLN 118 ? C GLN 118 5 1 Y 1 C LYS 119 ? C LYS 119 6 1 Y 1 D G 1 ? D G 1 7 1 Y 1 D C 33 ? D C 33 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 CA CA CA N N 146 CYS N N N N 147 CYS CA C N R 148 CYS C C N N 149 CYS O O N N 150 CYS CB C N N 151 CYS SG S N N 152 CYS OXT O N N 153 CYS H H N N 154 CYS H2 H N N 155 CYS HA H N N 156 CYS HB2 H N N 157 CYS HB3 H N N 158 CYS HG H N N 159 CYS HXT H N N 160 G OP3 O N N 161 G P P N N 162 G OP1 O N N 163 G OP2 O N N 164 G "O5'" O N N 165 G "C5'" C N N 166 G "C4'" C N R 167 G "O4'" O N N 168 G "C3'" C N S 169 G "O3'" O N N 170 G "C2'" C N R 171 G "O2'" O N N 172 G "C1'" C N R 173 G N9 N Y N 174 G C8 C Y N 175 G N7 N Y N 176 G C5 C Y N 177 G C6 C N N 178 G O6 O N N 179 G N1 N N N 180 G C2 C N N 181 G N2 N N N 182 G N3 N N N 183 G C4 C Y N 184 G HOP3 H N N 185 G HOP2 H N N 186 G "H5'" H N N 187 G "H5''" H N N 188 G "H4'" H N N 189 G "H3'" H N N 190 G "HO3'" H N N 191 G "H2'" H N N 192 G "HO2'" H N N 193 G "H1'" H N N 194 G H8 H N N 195 G H1 H N N 196 G H21 H N N 197 G H22 H N N 198 GLN N N N N 199 GLN CA C N S 200 GLN C C N N 201 GLN O O N N 202 GLN CB C N N 203 GLN CG C N N 204 GLN CD C N N 205 GLN OE1 O N N 206 GLN NE2 N N N 207 GLN OXT O N N 208 GLN H H N N 209 GLN H2 H N N 210 GLN HA H N N 211 GLN HB2 H N N 212 GLN HB3 H N N 213 GLN HG2 H N N 214 GLN HG3 H N N 215 GLN HE21 H N N 216 GLN HE22 H N N 217 GLN HXT H N N 218 GLU N N N N 219 GLU CA C N S 220 GLU C C N N 221 GLU O O N N 222 GLU CB C N N 223 GLU CG C N N 224 GLU CD C N N 225 GLU OE1 O N N 226 GLU OE2 O N N 227 GLU OXT O N N 228 GLU H H N N 229 GLU H2 H N N 230 GLU HA H N N 231 GLU HB2 H N N 232 GLU HB3 H N N 233 GLU HG2 H N N 234 GLU HG3 H N N 235 GLU HE2 H N N 236 GLU HXT H N N 237 GLY N N N N 238 GLY CA C N N 239 GLY C C N N 240 GLY O O N N 241 GLY OXT O N N 242 GLY H H N N 243 GLY H2 H N N 244 GLY HA2 H N N 245 GLY HA3 H N N 246 GLY HXT H N N 247 HIS N N N N 248 HIS CA C N S 249 HIS C C N N 250 HIS O O N N 251 HIS CB C N N 252 HIS CG C Y N 253 HIS ND1 N Y N 254 HIS CD2 C Y N 255 HIS CE1 C Y N 256 HIS NE2 N Y N 257 HIS OXT O N N 258 HIS H H N N 259 HIS H2 H N N 260 HIS HA H N N 261 HIS HB2 H N N 262 HIS HB3 H N N 263 HIS HD1 H N N 264 HIS HD2 H N N 265 HIS HE1 H N N 266 HIS HE2 H N N 267 HIS HXT H N N 268 ILE N N N N 269 ILE CA C N S 270 ILE C C N N 271 ILE O O N N 272 ILE CB C N S 273 ILE CG1 C N N 274 ILE CG2 C N N 275 ILE CD1 C N N 276 ILE OXT O N N 277 ILE H H N N 278 ILE H2 H N N 279 ILE HA H N N 280 ILE HB H N N 281 ILE HG12 H N N 282 ILE HG13 H N N 283 ILE HG21 H N N 284 ILE HG22 H N N 285 ILE HG23 H N N 286 ILE HD11 H N N 287 ILE HD12 H N N 288 ILE HD13 H N N 289 ILE HXT H N N 290 LEU N N N N 291 LEU CA C N S 292 LEU C C N N 293 LEU O O N N 294 LEU CB C N N 295 LEU CG C N N 296 LEU CD1 C N N 297 LEU CD2 C N N 298 LEU OXT O N N 299 LEU H H N N 300 LEU H2 H N N 301 LEU HA H N N 302 LEU HB2 H N N 303 LEU HB3 H N N 304 LEU HG H N N 305 LEU HD11 H N N 306 LEU HD12 H N N 307 LEU HD13 H N N 308 LEU HD21 H N N 309 LEU HD22 H N N 310 LEU HD23 H N N 311 LEU HXT H N N 312 LYS N N N N 313 LYS CA C N S 314 LYS C C N N 315 LYS O O N N 316 LYS CB C N N 317 LYS CG C N N 318 LYS CD C N N 319 LYS CE C N N 320 LYS NZ N N N 321 LYS OXT O N N 322 LYS H H N N 323 LYS H2 H N N 324 LYS HA H N N 325 LYS HB2 H N N 326 LYS HB3 H N N 327 LYS HG2 H N N 328 LYS HG3 H N N 329 LYS HD2 H N N 330 LYS HD3 H N N 331 LYS HE2 H N N 332 LYS HE3 H N N 333 LYS HZ1 H N N 334 LYS HZ2 H N N 335 LYS HZ3 H N N 336 LYS HXT H N N 337 MET N N N N 338 MET CA C N S 339 MET C C N N 340 MET O O N N 341 MET CB C N N 342 MET CG C N N 343 MET SD S N N 344 MET CE C N N 345 MET OXT O N N 346 MET H H N N 347 MET H2 H N N 348 MET HA H N N 349 MET HB2 H N N 350 MET HB3 H N N 351 MET HG2 H N N 352 MET HG3 H N N 353 MET HE1 H N N 354 MET HE2 H N N 355 MET HE3 H N N 356 MET HXT H N N 357 PHE N N N N 358 PHE CA C N S 359 PHE C C N N 360 PHE O O N N 361 PHE CB C N N 362 PHE CG C Y N 363 PHE CD1 C Y N 364 PHE CD2 C Y N 365 PHE CE1 C Y N 366 PHE CE2 C Y N 367 PHE CZ C Y N 368 PHE OXT O N N 369 PHE H H N N 370 PHE H2 H N N 371 PHE HA H N N 372 PHE HB2 H N N 373 PHE HB3 H N N 374 PHE HD1 H N N 375 PHE HD2 H N N 376 PHE HE1 H N N 377 PHE HE2 H N N 378 PHE HZ H N N 379 PHE HXT H N N 380 PRO N N N N 381 PRO CA C N S 382 PRO C C N N 383 PRO O O N N 384 PRO CB C N N 385 PRO CG C N N 386 PRO CD C N N 387 PRO OXT O N N 388 PRO H H N N 389 PRO HA H N N 390 PRO HB2 H N N 391 PRO HB3 H N N 392 PRO HG2 H N N 393 PRO HG3 H N N 394 PRO HD2 H N N 395 PRO HD3 H N N 396 PRO HXT H N N 397 SER N N N N 398 SER CA C N S 399 SER C C N N 400 SER O O N N 401 SER CB C N N 402 SER OG O N N 403 SER OXT O N N 404 SER H H N N 405 SER H2 H N N 406 SER HA H N N 407 SER HB2 H N N 408 SER HB3 H N N 409 SER HG H N N 410 SER HXT H N N 411 THR N N N N 412 THR CA C N S 413 THR C C N N 414 THR O O N N 415 THR CB C N R 416 THR OG1 O N N 417 THR CG2 C N N 418 THR OXT O N N 419 THR H H N N 420 THR H2 H N N 421 THR HA H N N 422 THR HB H N N 423 THR HG1 H N N 424 THR HG21 H N N 425 THR HG22 H N N 426 THR HG23 H N N 427 THR HXT H N N 428 TYR N N N N 429 TYR CA C N S 430 TYR C C N N 431 TYR O O N N 432 TYR CB C N N 433 TYR CG C Y N 434 TYR CD1 C Y N 435 TYR CD2 C Y N 436 TYR CE1 C Y N 437 TYR CE2 C Y N 438 TYR CZ C Y N 439 TYR OH O N N 440 TYR OXT O N N 441 TYR H H N N 442 TYR H2 H N N 443 TYR HA H N N 444 TYR HB2 H N N 445 TYR HB3 H N N 446 TYR HD1 H N N 447 TYR HD2 H N N 448 TYR HE1 H N N 449 TYR HE2 H N N 450 TYR HH H N N 451 TYR HXT H N N 452 U OP3 O N N 453 U P P N N 454 U OP1 O N N 455 U OP2 O N N 456 U "O5'" O N N 457 U "C5'" C N N 458 U "C4'" C N R 459 U "O4'" O N N 460 U "C3'" C N S 461 U "O3'" O N N 462 U "C2'" C N R 463 U "O2'" O N N 464 U "C1'" C N R 465 U N1 N N N 466 U C2 C N N 467 U O2 O N N 468 U N3 N N N 469 U C4 C N N 470 U O4 O N N 471 U C5 C N N 472 U C6 C N N 473 U HOP3 H N N 474 U HOP2 H N N 475 U "H5'" H N N 476 U "H5''" H N N 477 U "H4'" H N N 478 U "H3'" H N N 479 U "HO3'" H N N 480 U "H2'" H N N 481 U "HO2'" H N N 482 U "H1'" H N N 483 U H3 H N N 484 U H5 H N N 485 U H6 H N N 486 VAL N N N N 487 VAL CA C N S 488 VAL C C N N 489 VAL O O N N 490 VAL CB C N N 491 VAL CG1 C N N 492 VAL CG2 C N N 493 VAL OXT O N N 494 VAL H H N N 495 VAL H2 H N N 496 VAL HA H N N 497 VAL HB H N N 498 VAL HG11 H N N 499 VAL HG12 H N N 500 VAL HG13 H N N 501 VAL HG21 H N N 502 VAL HG22 H N N 503 VAL HG23 H N N 504 VAL HXT H N N 505 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 CYS N CA sing N N 145 CYS N H sing N N 146 CYS N H2 sing N N 147 CYS CA C sing N N 148 CYS CA CB sing N N 149 CYS CA HA sing N N 150 CYS C O doub N N 151 CYS C OXT sing N N 152 CYS CB SG sing N N 153 CYS CB HB2 sing N N 154 CYS CB HB3 sing N N 155 CYS SG HG sing N N 156 CYS OXT HXT sing N N 157 G OP3 P sing N N 158 G OP3 HOP3 sing N N 159 G P OP1 doub N N 160 G P OP2 sing N N 161 G P "O5'" sing N N 162 G OP2 HOP2 sing N N 163 G "O5'" "C5'" sing N N 164 G "C5'" "C4'" sing N N 165 G "C5'" "H5'" sing N N 166 G "C5'" "H5''" sing N N 167 G "C4'" "O4'" sing N N 168 G "C4'" "C3'" sing N N 169 G "C4'" "H4'" sing N N 170 G "O4'" "C1'" sing N N 171 G "C3'" "O3'" sing N N 172 G "C3'" "C2'" sing N N 173 G "C3'" "H3'" sing N N 174 G "O3'" "HO3'" sing N N 175 G "C2'" "O2'" sing N N 176 G "C2'" "C1'" sing N N 177 G "C2'" "H2'" sing N N 178 G "O2'" "HO2'" sing N N 179 G "C1'" N9 sing N N 180 G "C1'" "H1'" sing N N 181 G N9 C8 sing Y N 182 G N9 C4 sing Y N 183 G C8 N7 doub Y N 184 G C8 H8 sing N N 185 G N7 C5 sing Y N 186 G C5 C6 sing N N 187 G C5 C4 doub Y N 188 G C6 O6 doub N N 189 G C6 N1 sing N N 190 G N1 C2 sing N N 191 G N1 H1 sing N N 192 G C2 N2 sing N N 193 G C2 N3 doub N N 194 G N2 H21 sing N N 195 G N2 H22 sing N N 196 G N3 C4 sing N N 197 GLN N CA sing N N 198 GLN N H sing N N 199 GLN N H2 sing N N 200 GLN CA C sing N N 201 GLN CA CB sing N N 202 GLN CA HA sing N N 203 GLN C O doub N N 204 GLN C OXT sing N N 205 GLN CB CG sing N N 206 GLN CB HB2 sing N N 207 GLN CB HB3 sing N N 208 GLN CG CD sing N N 209 GLN CG HG2 sing N N 210 GLN CG HG3 sing N N 211 GLN CD OE1 doub N N 212 GLN CD NE2 sing N N 213 GLN NE2 HE21 sing N N 214 GLN NE2 HE22 sing N N 215 GLN OXT HXT sing N N 216 GLU N CA sing N N 217 GLU N H sing N N 218 GLU N H2 sing N N 219 GLU CA C sing N N 220 GLU CA CB sing N N 221 GLU CA HA sing N N 222 GLU C O doub N N 223 GLU C OXT sing N N 224 GLU CB CG sing N N 225 GLU CB HB2 sing N N 226 GLU CB HB3 sing N N 227 GLU CG CD sing N N 228 GLU CG HG2 sing N N 229 GLU CG HG3 sing N N 230 GLU CD OE1 doub N N 231 GLU CD OE2 sing N N 232 GLU OE2 HE2 sing N N 233 GLU OXT HXT sing N N 234 GLY N CA sing N N 235 GLY N H sing N N 236 GLY N H2 sing N N 237 GLY CA C sing N N 238 GLY CA HA2 sing N N 239 GLY CA HA3 sing N N 240 GLY C O doub N N 241 GLY C OXT sing N N 242 GLY OXT HXT sing N N 243 HIS N CA sing N N 244 HIS N H sing N N 245 HIS N H2 sing N N 246 HIS CA C sing N N 247 HIS CA CB sing N N 248 HIS CA HA sing N N 249 HIS C O doub N N 250 HIS C OXT sing N N 251 HIS CB CG sing N N 252 HIS CB HB2 sing N N 253 HIS CB HB3 sing N N 254 HIS CG ND1 sing Y N 255 HIS CG CD2 doub Y N 256 HIS ND1 CE1 doub Y N 257 HIS ND1 HD1 sing N N 258 HIS CD2 NE2 sing Y N 259 HIS CD2 HD2 sing N N 260 HIS CE1 NE2 sing Y N 261 HIS CE1 HE1 sing N N 262 HIS NE2 HE2 sing N N 263 HIS OXT HXT sing N N 264 ILE N CA sing N N 265 ILE N H sing N N 266 ILE N H2 sing N N 267 ILE CA C sing N N 268 ILE CA CB sing N N 269 ILE CA HA sing N N 270 ILE C O doub N N 271 ILE C OXT sing N N 272 ILE CB CG1 sing N N 273 ILE CB CG2 sing N N 274 ILE CB HB sing N N 275 ILE CG1 CD1 sing N N 276 ILE CG1 HG12 sing N N 277 ILE CG1 HG13 sing N N 278 ILE CG2 HG21 sing N N 279 ILE CG2 HG22 sing N N 280 ILE CG2 HG23 sing N N 281 ILE CD1 HD11 sing N N 282 ILE CD1 HD12 sing N N 283 ILE CD1 HD13 sing N N 284 ILE OXT HXT sing N N 285 LEU N CA sing N N 286 LEU N H sing N N 287 LEU N H2 sing N N 288 LEU CA C sing N N 289 LEU CA CB sing N N 290 LEU CA HA sing N N 291 LEU C O doub N N 292 LEU C OXT sing N N 293 LEU CB CG sing N N 294 LEU CB HB2 sing N N 295 LEU CB HB3 sing N N 296 LEU CG CD1 sing N N 297 LEU CG CD2 sing N N 298 LEU CG HG sing N N 299 LEU CD1 HD11 sing N N 300 LEU CD1 HD12 sing N N 301 LEU CD1 HD13 sing N N 302 LEU CD2 HD21 sing N N 303 LEU CD2 HD22 sing N N 304 LEU CD2 HD23 sing N N 305 LEU OXT HXT sing N N 306 LYS N CA sing N N 307 LYS N H sing N N 308 LYS N H2 sing N N 309 LYS CA C sing N N 310 LYS CA CB sing N N 311 LYS CA HA sing N N 312 LYS C O doub N N 313 LYS C OXT sing N N 314 LYS CB CG sing N N 315 LYS CB HB2 sing N N 316 LYS CB HB3 sing N N 317 LYS CG CD sing N N 318 LYS CG HG2 sing N N 319 LYS CG HG3 sing N N 320 LYS CD CE sing N N 321 LYS CD HD2 sing N N 322 LYS CD HD3 sing N N 323 LYS CE NZ sing N N 324 LYS CE HE2 sing N N 325 LYS CE HE3 sing N N 326 LYS NZ HZ1 sing N N 327 LYS NZ HZ2 sing N N 328 LYS NZ HZ3 sing N N 329 LYS OXT HXT sing N N 330 MET N CA sing N N 331 MET N H sing N N 332 MET N H2 sing N N 333 MET CA C sing N N 334 MET CA CB sing N N 335 MET CA HA sing N N 336 MET C O doub N N 337 MET C OXT sing N N 338 MET CB CG sing N N 339 MET CB HB2 sing N N 340 MET CB HB3 sing N N 341 MET CG SD sing N N 342 MET CG HG2 sing N N 343 MET CG HG3 sing N N 344 MET SD CE sing N N 345 MET CE HE1 sing N N 346 MET CE HE2 sing N N 347 MET CE HE3 sing N N 348 MET OXT HXT sing N N 349 PHE N CA sing N N 350 PHE N H sing N N 351 PHE N H2 sing N N 352 PHE CA C sing N N 353 PHE CA CB sing N N 354 PHE CA HA sing N N 355 PHE C O doub N N 356 PHE C OXT sing N N 357 PHE CB CG sing N N 358 PHE CB HB2 sing N N 359 PHE CB HB3 sing N N 360 PHE CG CD1 doub Y N 361 PHE CG CD2 sing Y N 362 PHE CD1 CE1 sing Y N 363 PHE CD1 HD1 sing N N 364 PHE CD2 CE2 doub Y N 365 PHE CD2 HD2 sing N N 366 PHE CE1 CZ doub Y N 367 PHE CE1 HE1 sing N N 368 PHE CE2 CZ sing Y N 369 PHE CE2 HE2 sing N N 370 PHE CZ HZ sing N N 371 PHE OXT HXT sing N N 372 PRO N CA sing N N 373 PRO N CD sing N N 374 PRO N H sing N N 375 PRO CA C sing N N 376 PRO CA CB sing N N 377 PRO CA HA sing N N 378 PRO C O doub N N 379 PRO C OXT sing N N 380 PRO CB CG sing N N 381 PRO CB HB2 sing N N 382 PRO CB HB3 sing N N 383 PRO CG CD sing N N 384 PRO CG HG2 sing N N 385 PRO CG HG3 sing N N 386 PRO CD HD2 sing N N 387 PRO CD HD3 sing N N 388 PRO OXT HXT sing N N 389 SER N CA sing N N 390 SER N H sing N N 391 SER N H2 sing N N 392 SER CA C sing N N 393 SER CA CB sing N N 394 SER CA HA sing N N 395 SER C O doub N N 396 SER C OXT sing N N 397 SER CB OG sing N N 398 SER CB HB2 sing N N 399 SER CB HB3 sing N N 400 SER OG HG sing N N 401 SER OXT HXT sing N N 402 THR N CA sing N N 403 THR N H sing N N 404 THR N H2 sing N N 405 THR CA C sing N N 406 THR CA CB sing N N 407 THR CA HA sing N N 408 THR C O doub N N 409 THR C OXT sing N N 410 THR CB OG1 sing N N 411 THR CB CG2 sing N N 412 THR CB HB sing N N 413 THR OG1 HG1 sing N N 414 THR CG2 HG21 sing N N 415 THR CG2 HG22 sing N N 416 THR CG2 HG23 sing N N 417 THR OXT HXT sing N N 418 TYR N CA sing N N 419 TYR N H sing N N 420 TYR N H2 sing N N 421 TYR CA C sing N N 422 TYR CA CB sing N N 423 TYR CA HA sing N N 424 TYR C O doub N N 425 TYR C OXT sing N N 426 TYR CB CG sing N N 427 TYR CB HB2 sing N N 428 TYR CB HB3 sing N N 429 TYR CG CD1 doub Y N 430 TYR CG CD2 sing Y N 431 TYR CD1 CE1 sing Y N 432 TYR CD1 HD1 sing N N 433 TYR CD2 CE2 doub Y N 434 TYR CD2 HD2 sing N N 435 TYR CE1 CZ doub Y N 436 TYR CE1 HE1 sing N N 437 TYR CE2 CZ sing Y N 438 TYR CE2 HE2 sing N N 439 TYR CZ OH sing N N 440 TYR OH HH sing N N 441 TYR OXT HXT sing N N 442 U OP3 P sing N N 443 U OP3 HOP3 sing N N 444 U P OP1 doub N N 445 U P OP2 sing N N 446 U P "O5'" sing N N 447 U OP2 HOP2 sing N N 448 U "O5'" "C5'" sing N N 449 U "C5'" "C4'" sing N N 450 U "C5'" "H5'" sing N N 451 U "C5'" "H5''" sing N N 452 U "C4'" "O4'" sing N N 453 U "C4'" "C3'" sing N N 454 U "C4'" "H4'" sing N N 455 U "O4'" "C1'" sing N N 456 U "C3'" "O3'" sing N N 457 U "C3'" "C2'" sing N N 458 U "C3'" "H3'" sing N N 459 U "O3'" "HO3'" sing N N 460 U "C2'" "O2'" sing N N 461 U "C2'" "C1'" sing N N 462 U "C2'" "H2'" sing N N 463 U "O2'" "HO2'" sing N N 464 U "C1'" N1 sing N N 465 U "C1'" "H1'" sing N N 466 U N1 C2 sing N N 467 U N1 C6 sing N N 468 U C2 O2 doub N N 469 U C2 N3 sing N N 470 U N3 C4 sing N N 471 U N3 H3 sing N N 472 U C4 O4 doub N N 473 U C4 C5 sing N N 474 U C5 C6 doub N N 475 U C5 H5 sing N N 476 U C6 H6 sing N N 477 VAL N CA sing N N 478 VAL N H sing N N 479 VAL N H2 sing N N 480 VAL CA C sing N N 481 VAL CA CB sing N N 482 VAL CA HA sing N N 483 VAL C O doub N N 484 VAL C OXT sing N N 485 VAL CB CG1 sing N N 486 VAL CB CG2 sing N N 487 VAL CB HB sing N N 488 VAL CG1 HG11 sing N N 489 VAL CG1 HG12 sing N N 490 VAL CG1 HG13 sing N N 491 VAL CG2 HG21 sing N N 492 VAL CG2 HG22 sing N N 493 VAL CG2 HG23 sing N N 494 VAL OXT HXT sing N N 495 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9L6Y 'double helix' 9L6Y 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B G 1 1_555 B C 33 1_555 -0.189 -0.117 0.397 13.505 3.632 0.272 1 B_G1:C33_B B 1 ? B 33 ? 19 1 1 B G 2 1_555 B C 32 1_555 -0.196 -0.138 0.214 4.062 3.017 3.881 2 B_G2:C32_B B 2 ? B 32 ? 19 1 1 B A 3 1_555 B U 31 1_555 0.030 -0.133 -0.322 1.080 4.174 2.839 3 B_A3:U31_B B 3 ? B 31 ? 20 1 1 B U 4 1_555 B A 30 1_555 0.104 -0.084 -0.231 2.242 1.118 0.025 4 B_U4:A30_B B 4 ? B 30 ? 20 1 1 B G 5 1_555 B C 29 1_555 -0.232 -0.130 0.224 0.541 4.832 2.582 5 B_G5:C29_B B 5 ? B 29 ? 19 1 1 B C 6 1_555 B G 28 1_555 0.207 -0.129 0.094 -0.027 3.027 -1.842 6 B_C6:G28_B B 6 ? B 28 ? 19 1 1 B A 7 1_555 B C 27 1_555 4.255 0.118 -0.004 2.804 2.372 -3.895 7 B_A7:C27_B B 7 ? B 27 ? ? ? 1 B G 8 1_555 B A 26 1_555 7.861 -4.525 0.468 13.635 -7.036 -45.536 8 B_G8:A26_B B 8 ? B 26 ? ? ? 1 B A 9 1_555 B G 25 1_555 -6.403 -4.095 1.231 -12.482 15.565 0.883 9 B_A9:G25_B B 9 ? B 25 ? 11 9 1 B G 10 1_555 B C 21 1_555 -0.113 -0.180 -0.467 -6.562 6.181 -0.022 10 B_G10:C21_B B 10 ? B 21 ? 19 1 1 B A 11 1_555 B U 20 1_555 0.020 -0.119 -0.078 1.659 3.818 3.810 11 B_A11:U20_B B 11 ? B 20 ? 20 1 1 B A 12 1_555 B U 19 1_555 0.017 -0.143 0.339 -0.136 9.971 0.456 12 B_A12:U19_B B 12 ? B 19 ? 20 1 1 B C 13 1_555 B G 18 1_555 0.180 -0.136 0.226 7.070 12.378 2.510 13 B_C13:G18_B B 13 ? B 18 ? 19 1 1 D G 2 1_555 D C 32 1_555 -0.193 -0.162 -0.781 -6.287 -6.818 2.830 14 D_G2:C32_D D 2 ? D 32 ? 19 1 1 D A 3 1_555 D U 31 1_555 0.561 0.633 -0.267 -12.629 -7.684 40.283 15 D_A3:U31_D D 3 ? D 31 ? ? 1 1 D U 4 1_555 D A 30 1_555 -0.123 -0.010 -0.030 2.358 -4.726 -4.675 16 D_U4:A30_D D 4 ? D 30 ? 20 1 1 D G 5 1_555 D C 29 1_555 -0.216 -0.045 -0.107 -7.208 -6.122 1.703 17 D_G5:C29_D D 5 ? D 29 ? 19 1 1 D C 6 1_555 D G 28 1_555 0.097 -0.167 0.216 -5.744 -2.928 -5.142 18 D_C6:G28_D D 6 ? D 28 ? 19 1 1 D A 7 1_555 D C 27 1_555 4.084 0.101 -0.091 -7.077 0.423 -7.563 19 D_A7:C27_D D 7 ? D 27 ? ? ? 1 D G 8 1_555 D A 26 1_555 7.624 -4.703 0.401 12.078 -4.427 -41.462 20 D_G8:A26_D D 8 ? D 26 ? ? ? 1 D A 9 1_555 D G 25 1_555 -6.270 -4.068 1.182 -11.841 16.925 -1.723 21 D_A9:G25_D D 9 ? D 25 ? 11 9 1 D G 10 1_555 D C 21 1_555 -0.141 -0.166 -0.470 -7.366 4.172 1.617 22 D_G10:C21_D D 10 ? D 21 ? 19 1 1 D A 11 1_555 D U 20 1_555 -0.001 -0.134 -0.412 -7.459 2.005 2.773 23 D_A11:U20_D D 11 ? D 20 ? 20 1 1 D A 12 1_555 D U 19 1_555 0.065 -0.082 -0.144 -2.948 6.945 2.797 24 D_A12:U19_D D 12 ? D 19 ? 20 1 1 D C 13 1_555 D G 18 1_555 0.260 -0.179 0.297 2.884 13.838 1.739 25 D_C13:G18_D D 13 ? D 18 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B G 1 1_555 B C 33 1_555 B G 2 1_555 B C 32 1_555 -0.166 -2.078 3.410 -4.291 5.165 35.781 -4.049 -0.332 3.089 8.316 6.909 36.385 1 BB_G1G2:C32C33_BB B 1 ? B 33 ? B 2 ? B 32 ? 1 B G 2 1_555 B C 32 1_555 B A 3 1_555 B U 31 1_555 -0.690 -1.780 3.336 0.374 2.657 30.786 -3.854 1.367 3.167 4.993 -0.703 30.900 2 BB_G2A3:U31C32_BB B 2 ? B 32 ? B 3 ? B 31 ? 1 B A 3 1_555 B U 31 1_555 B U 4 1_555 B A 30 1_555 0.281 -1.535 3.403 1.345 5.797 34.614 -3.416 -0.264 3.122 9.655 -2.239 35.107 3 BB_A3U4:A30U31_BB B 3 ? B 31 ? B 4 ? B 30 ? 1 B U 4 1_555 B A 30 1_555 B G 5 1_555 B C 29 1_555 0.023 -1.591 3.159 -1.579 11.524 26.525 -5.407 -0.351 2.278 23.718 3.250 28.921 4 BB_U4G5:C29A30_BB B 4 ? B 30 ? B 5 ? B 29 ? 1 B G 5 1_555 B C 29 1_555 B C 6 1_555 B G 28 1_555 -0.265 -1.419 3.239 2.139 9.122 41.317 -2.846 0.573 2.860 12.731 -2.985 42.321 5 BB_G5C6:G28C29_BB B 5 ? B 29 ? B 6 ? B 28 ? 1 B C 6 1_555 B G 28 1_555 B A 7 1_555 B C 27 1_555 -0.673 -1.002 3.418 6.297 5.093 37.214 -2.190 1.840 3.109 7.867 -9.727 38.054 6 BB_C6A7:C27G28_BB B 6 ? B 28 ? B 7 ? B 27 ? 1 B A 7 1_555 B C 27 1_555 B G 8 1_555 B A 26 1_555 -1.478 -1.449 3.408 8.798 4.817 48.758 -2.072 2.394 2.969 5.765 -10.528 49.717 7 BB_A7G8:A26C27_BB B 7 ? B 27 ? B 8 ? B 26 ? 1 B G 8 1_555 B A 26 1_555 B A 9 1_555 B G 25 1_555 2.503 -0.104 3.820 5.305 -21.299 -19.427 5.218 6.207 2.029 47.524 11.837 -29.233 8 BB_G8A9:G25A26_BB B 8 ? B 26 ? B 9 ? B 25 ? 1 B G 10 1_555 B C 21 1_555 B A 11 1_555 B U 20 1_555 0.221 -1.900 3.057 -1.401 6.631 31.898 -4.397 -0.607 2.608 11.898 2.514 32.591 9 BB_G10A11:U20C21_BB B 10 ? B 21 ? B 11 ? B 20 ? 1 B A 11 1_555 B U 20 1_555 B A 12 1_555 B U 19 1_555 -0.824 -1.763 3.313 -3.750 10.026 29.958 -4.957 0.856 2.679 18.662 6.979 31.771 10 BB_A11A12:U19U20_BB B 11 ? B 20 ? B 12 ? B 19 ? 1 B A 12 1_555 B U 19 1_555 B C 13 1_555 B G 18 1_555 0.268 -1.721 3.192 1.606 6.607 35.423 -3.653 -0.221 2.845 10.736 -2.609 36.049 11 BB_A12C13:G18U19_BB B 12 ? B 19 ? B 13 ? B 18 ? 1 D G 2 1_555 D C 32 1_555 D A 3 1_555 D U 31 1_555 1.270 -0.905 3.460 -4.485 3.976 39.327 -1.803 -2.400 3.199 5.867 6.618 39.763 12 DD_G2A3:U31C32_DD D 2 ? D 32 ? D 3 ? D 31 ? 1 D A 3 1_555 D U 31 1_555 D U 4 1_555 D A 30 1_555 -1.628 -0.576 3.063 0.994 7.685 23.586 -3.429 4.059 2.674 18.183 -2.352 24.810 13 DD_A3U4:A30U31_DD D 3 ? D 31 ? D 4 ? D 30 ? 1 D U 4 1_555 D A 30 1_555 D G 5 1_555 D C 29 1_555 -0.099 -1.661 3.121 -3.803 19.796 31.488 -4.758 -0.260 1.801 32.631 6.269 37.250 14 DD_U4G5:C29A30_DD D 4 ? D 30 ? D 5 ? D 29 ? 1 D G 5 1_555 D C 29 1_555 D C 6 1_555 D G 28 1_555 -0.416 -1.534 3.189 -5.131 6.610 35.029 -3.370 -0.016 2.892 10.792 8.378 35.984 15 DD_G5C6:G28C29_DD D 5 ? D 29 ? D 6 ? D 28 ? 1 D C 6 1_555 D G 28 1_555 D A 7 1_555 D C 27 1_555 -0.963 -1.676 3.276 3.871 5.672 41.734 -2.880 1.714 2.937 7.897 -5.390 42.270 16 DD_C6A7:C27G28_DD D 6 ? D 28 ? D 7 ? D 27 ? 1 D A 7 1_555 D C 27 1_555 D G 8 1_555 D A 26 1_555 -1.151 -1.517 3.107 7.842 3.739 47.296 -2.130 1.973 2.774 4.615 -9.679 48.043 17 DD_A7G8:A26C27_DD D 7 ? D 27 ? D 8 ? D 26 ? 1 D G 8 1_555 D A 26 1_555 D A 9 1_555 D G 25 1_555 2.236 -0.101 3.912 3.565 -21.761 -18.830 5.728 5.382 2.214 49.327 8.081 -28.921 18 DD_G8A9:G25A26_DD D 8 ? D 26 ? D 9 ? D 25 ? 1 D G 10 1_555 D C 21 1_555 D A 11 1_555 D U 20 1_555 -0.008 -1.864 3.185 0.662 10.363 32.544 -4.640 0.107 2.491 17.931 -1.145 34.118 19 DD_G10A11:U20C21_DD D 10 ? D 21 ? D 11 ? D 20 ? 1 D A 11 1_555 D U 20 1_555 D A 12 1_555 D U 19 1_555 -0.368 -1.547 3.261 -3.158 4.493 28.342 -4.071 0.058 3.007 9.068 6.375 28.858 20 DD_A11A12:U19U20_DD D 11 ? D 20 ? D 12 ? D 19 ? 1 D A 12 1_555 D U 19 1_555 D C 13 1_555 D G 18 1_555 0.238 -1.697 3.167 -2.631 7.763 34.157 -3.872 -0.753 2.703 12.986 4.400 35.099 21 DD_A12C13:G18U19_DD D 12 ? D 19 ? D 13 ? D 18 ? # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 19K15701 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4BW0 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9L6Y _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.017762 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005224 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018090 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012551 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C CA N O P S # loop_ #