HEADER MEMBRANE PROTEIN/RNA 27-DEC-24 9L8O TITLE STRUCTURE OF SID-1 IN COMPLEX WITH DSRNA (DODECAMERIC FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYSTEMIC RNA INTERFERENCE DEFECTIVE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SYSTEMIC RNAI ENABLING PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (24-MER); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: RNA (24-MER); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: SID-1, RDE-7, RSD-8, C04F5.1; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS MEMBRANE PROTEIN, COMPLEX, MEMBRANE PROTEIN-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR S.MURAKOSHI,K.KUMAZAKI,T.KUSAKIZAKO,O.NUREKI REVDAT 1 28-JAN-26 9L8O 0 JRNL AUTH A.TAKAI,K.KUMAZAKI,T.AWAZU,T.KAMBARA,S.MURAKOSHI,T.KATO, JRNL AUTH 2 M.HIRAIZUMI,Y.KISE,T.KUSAKIZAKO,T.NISHIZAWA,T.OKADA,O.NUREKI JRNL TITL STRUCTURAL INSIGHTS INTO SID1-MEDIATED DSRNA UPTAKE: A JRNL TITL 2 SELF-ORGANIZING ENDOCYTIC MECHANISM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, SERIALEM, COOT, SERVALCAT, REMARK 3 CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.990 REMARK 3 NUMBER OF PARTICLES : 52278 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9L8O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300054571. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SID-1 IN COMPLEX WITH DSRNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 10734 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1600.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4800.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 105000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 326.53471 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 -87.49471 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 565.57470 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 151.54528 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 478.07999 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 478.07999 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 5 -0.500000 0.866025 0.000000 151.54528 REMARK 350 BIOMT2 5 -0.866025 -0.500000 0.000000 565.57470 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -87.49471 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 326.53471 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 0.000000 -1.000000 0.000000 478.07999 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 478.07999 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 8 0.500000 0.866025 0.000000 -87.49471 REMARK 350 BIOMT2 8 0.866025 -0.500000 0.000000 151.54528 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 478.07999 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 9 0.500000 -0.866025 0.000000 326.53471 REMARK 350 BIOMT2 9 -0.866025 -0.500000 0.000000 565.57470 REMARK 350 BIOMT3 9 0.000000 0.000000 -1.000000 478.07999 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 10 -0.500000 0.866025 0.000000 151.54528 REMARK 350 BIOMT2 10 0.866025 0.500000 0.000000 -87.49471 REMARK 350 BIOMT3 10 0.000000 0.000000 -1.000000 478.07999 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 11 -0.500000 -0.866025 0.000000 565.57470 REMARK 350 BIOMT2 11 -0.866025 0.500000 0.000000 326.53471 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 478.07999 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, B, E REMARK 350 BIOMT1 12 -1.000000 0.000000 0.000000 478.07999 REMARK 350 BIOMT2 12 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 12 0.000000 0.000000 -1.000000 478.07999 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 PRO A 17 REMARK 465 GLN A 18 REMARK 465 ASN A 19 REMARK 465 ASN A 20 REMARK 465 SER A 21 REMARK 465 THR A 22 REMARK 465 THR A 23 REMARK 465 PRO A 24 REMARK 465 SER A 25 REMARK 465 PRO A 26 REMARK 465 ILE A 27 REMARK 465 ILE A 28 REMARK 465 THR A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 ASN A 32 REMARK 465 SER A 33 REMARK 465 ALA A 133 REMARK 465 HIS A 134 REMARK 465 ARG A 135 REMARK 465 LYS A 136 REMARK 465 ARG A 137 REMARK 465 HIS A 138 REMARK 465 ARG A 139 REMARK 465 ILE A 140 REMARK 465 GLY A 141 REMARK 465 ASP A 142 REMARK 465 PRO A 143 REMARK 465 ASN A 290 REMARK 465 THR A 291 REMARK 465 SER A 292 REMARK 465 ARG A 293 REMARK 465 LYS A 294 REMARK 465 SER A 343 REMARK 465 ARG A 344 REMARK 465 LYS A 345 REMARK 465 LEU A 346 REMARK 465 ALA A 347 REMARK 465 PRO A 348 REMARK 465 SER A 349 REMARK 465 GLN A 350 REMARK 465 SER A 351 REMARK 465 ASN A 352 REMARK 465 LEU A 353 REMARK 465 ILE A 354 REMARK 465 SER A 355 REMARK 465 PHE A 356 REMARK 465 SER A 357 REMARK 465 PRO A 358 REMARK 465 VAL A 359 REMARK 465 PRO A 360 REMARK 465 SER A 361 REMARK 465 GLU A 362 REMARK 465 GLN A 363 REMARK 465 ARG A 364 REMARK 465 ASP A 365 REMARK 465 MET A 366 REMARK 465 ASP A 367 REMARK 465 LEU A 368 REMARK 465 SER A 369 REMARK 465 HIS A 370 REMARK 465 ASP A 371 REMARK 465 GLU A 372 REMARK 465 GLN A 373 REMARK 465 GLN A 374 REMARK 465 ASN A 375 REMARK 465 THR A 376 REMARK 465 SER A 377 REMARK 465 SER A 378 REMARK 465 GLU A 379 REMARK 465 LEU A 380 REMARK 465 GLU A 381 REMARK 465 ASN A 382 REMARK 465 ASN A 383 REMARK 465 GLY A 384 REMARK 465 GLU A 385 REMARK 465 ILE A 386 REMARK 465 PRO A 387 REMARK 465 ALA A 388 REMARK 465 ALA A 389 REMARK 465 GLU A 390 REMARK 465 ASN A 391 REMARK 465 GLN A 392 REMARK 465 ILE A 393 REMARK 465 VAL A 394 REMARK 465 GLU A 395 REMARK 465 GLU A 396 REMARK 465 ILE A 397 REMARK 465 THR A 398 REMARK 465 ALA A 399 REMARK 465 GLU A 400 REMARK 465 ASN A 401 REMARK 465 GLN A 402 REMARK 465 GLU A 403 REMARK 465 THR A 404 REMARK 465 SER A 405 REMARK 465 VAL A 406 REMARK 465 GLU A 407 REMARK 465 GLU A 408 REMARK 465 GLY A 409 REMARK 465 ASN A 410 REMARK 465 ARG A 411 REMARK 465 GLU A 412 REMARK 465 ILE A 413 REMARK 465 GLN A 414 REMARK 465 VAL A 415 REMARK 465 LYS A 416 REMARK 465 ILE A 417 REMARK 465 PRO A 418 REMARK 465 LEU A 419 REMARK 465 LYS A 420 REMARK 465 GLN A 421 REMARK 465 ASP A 422 REMARK 465 SER A 423 REMARK 465 LEU A 424 REMARK 465 SER A 425 REMARK 465 LEU A 426 REMARK 465 HIS A 427 REMARK 465 GLY A 505 REMARK 465 ARG A 506 REMARK 465 HIS A 507 REMARK 465 GLU A 508 REMARK 465 TYR A 509 REMARK 465 SER A 510 REMARK 465 LEU A 625 REMARK 465 GLY A 626 REMARK 465 SER A 627 REMARK 465 GLU A 628 REMARK 465 LYS A 629 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 511 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 NAG B 1 C2 NAG B 2 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 250 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 176 35.86 -90.48 REMARK 500 THR A 256 -63.18 -134.46 REMARK 500 LYS A 272 -4.90 80.88 REMARK 500 SER A 288 -179.22 -176.46 REMARK 500 TYR A 314 45.69 -103.79 REMARK 500 CYS A 542 87.10 -156.71 REMARK 500 ASP A 716 102.57 -170.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 540 NE2 REMARK 620 2 HIS A 740 NE2 89.6 REMARK 620 3 HIS A 744 NE2 96.2 92.3 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-62888 RELATED DB: EMDB REMARK 900 STRUCTURE OF SID-1 IN COMPLEX WITH DSRNA (DODECAMERIC FORM) DBREF 9L8O A 18 776 UNP Q9GZC8 SID1_CAEEL 18 776 DBREF 9L8O C 1 11 PDB 9L8O 9L8O 1 11 DBREF 9L8O D 1 11 PDB 9L8O 9L8O 1 11 SEQADV 9L8O GLY A 16 UNP Q9GZC8 EXPRESSION TAG SEQADV 9L8O PRO A 17 UNP Q9GZC8 EXPRESSION TAG SEQRES 1 A 761 GLY PRO GLN ASN ASN SER THR THR PRO SER PRO ILE ILE SEQRES 2 A 761 THR SER SER ASN SER SER VAL LEU VAL PHE GLU ILE SER SEQRES 3 A 761 SER LYS MET LYS MET ILE GLU LYS LYS LEU GLU ALA ASN SEQRES 4 A 761 THR VAL HIS VAL LEU ARG LEU GLU LEU ASP GLN SER PHE SEQRES 5 A 761 ILE LEU ASP LEU THR LYS VAL ALA ALA GLU ILE VAL ASP SEQRES 6 A 761 SER SER LYS TYR SER LYS GLU ASP GLY VAL ILE LEU GLU SEQRES 7 A 761 VAL THR VAL SER ASN GLY ARG ASP SER PHE LEU LEU LYS SEQRES 8 A 761 LEU PRO THR VAL TYR PRO ASN LEU LYS LEU TYR THR ASP SEQRES 9 A 761 GLY LYS LEU LEU ASN PRO LEU VAL GLU GLN ASP PHE GLY SEQRES 10 A 761 ALA HIS ARG LYS ARG HIS ARG ILE GLY ASP PRO HIS PHE SEQRES 11 A 761 HIS GLN ASN LEU ILE VAL THR VAL GLN SER ARG LEU ASN SEQRES 12 A 761 ALA ASP ILE ASP TYR ARG LEU HIS VAL THR HIS LEU ASP SEQRES 13 A 761 ARG ALA GLN TYR ASP PHE LEU LYS PHE LYS THR GLY GLN SEQRES 14 A 761 THR THR LYS THR LEU SER ASN GLN LYS LEU THR PHE VAL SEQRES 15 A 761 LYS PRO ILE GLY PHE PHE LEU ASN CYS SER GLU GLN ASN SEQRES 16 A 761 ILE SER GLN PHE HIS VAL THR LEU TYR SER GLU ASP ASP SEQRES 17 A 761 ILE CYS ALA ASN LEU ILE THR VAL PRO ALA ASN GLU SER SEQRES 18 A 761 ILE TYR ASP ARG SER VAL ILE SER ASP LYS THR HIS ASN SEQRES 19 A 761 ARG ARG VAL LEU SER PHE THR LYS ARG ALA ASP ILE PHE SEQRES 20 A 761 PHE THR GLU THR GLU ILE SER MET PHE LYS SER PHE ARG SEQRES 21 A 761 ILE PHE VAL PHE ILE ALA PRO ASP ASP SER GLY CYS SER SEQRES 22 A 761 THR ASN THR SER ARG LYS SER PHE ASN GLU LYS LYS LYS SEQRES 23 A 761 ILE SER PHE GLU PHE LYS LYS LEU GLU ASN GLN SER TYR SEQRES 24 A 761 ALA VAL PRO THR ALA LEU MET MET ILE PHE LEU THR THR SEQRES 25 A 761 PRO CYS LEU LEU PHE LEU PRO ILE VAL ILE ASN ILE ILE SEQRES 26 A 761 LYS ASN SER ARG LYS LEU ALA PRO SER GLN SER ASN LEU SEQRES 27 A 761 ILE SER PHE SER PRO VAL PRO SER GLU GLN ARG ASP MET SEQRES 28 A 761 ASP LEU SER HIS ASP GLU GLN GLN ASN THR SER SER GLU SEQRES 29 A 761 LEU GLU ASN ASN GLY GLU ILE PRO ALA ALA GLU ASN GLN SEQRES 30 A 761 ILE VAL GLU GLU ILE THR ALA GLU ASN GLN GLU THR SER SEQRES 31 A 761 VAL GLU GLU GLY ASN ARG GLU ILE GLN VAL LYS ILE PRO SEQRES 32 A 761 LEU LYS GLN ASP SER LEU SER LEU HIS GLY GLN MET LEU SEQRES 33 A 761 GLN TYR PRO VAL ALA ILE ILE LEU PRO VAL LEU MET HIS SEQRES 34 A 761 THR ALA ILE GLU PHE HIS LYS TRP THR THR SER THR MET SEQRES 35 A 761 ALA ASN ARG ASP GLU MET CYS PHE HIS ASN HIS ALA CYS SEQRES 36 A 761 ALA ARG PRO LEU GLY GLU LEU ARG ALA TRP ASN ASN ILE SEQRES 37 A 761 ILE THR ASN ILE GLY TYR THR LEU TYR GLY ALA ILE PHE SEQRES 38 A 761 ILE VAL LEU SER ILE CYS ARG ARG GLY ARG HIS GLU TYR SEQRES 39 A 761 SER HIS VAL PHE GLY THR TYR GLU CYS THR LEU LEU ASP SEQRES 40 A 761 VAL THR ILE GLY VAL PHE MET VAL LEU GLN SER ILE ALA SEQRES 41 A 761 SER ALA THR TYR HIS ILE CYS PRO SER ASP VAL ALA PHE SEQRES 42 A 761 GLN PHE ASP THR PRO CYS ILE GLN VAL ILE CYS GLY LEU SEQRES 43 A 761 LEU MET VAL ARG GLN TRP PHE VAL ARG HIS GLU SER PRO SEQRES 44 A 761 SER PRO ALA TYR THR ASN ILE LEU LEU VAL GLY VAL VAL SEQRES 45 A 761 SER LEU ASN PHE LEU ILE SER ALA PHE SER LYS THR SER SEQRES 46 A 761 TYR VAL ARG PHE ILE ILE ALA VAL ILE HIS VAL ILE VAL SEQRES 47 A 761 VAL GLY SER ILE CYS LEU ALA LYS GLU ARG SER LEU GLY SEQRES 48 A 761 SER GLU LYS LEU LYS THR ARG PHE PHE ILE MET ALA PHE SEQRES 49 A 761 SER MET GLY ASN PHE ALA ALA ILE VAL MET TYR LEU THR SEQRES 50 A 761 LEU SER ALA PHE HIS LEU ASN GLN ILE ALA THR TYR CYS SEQRES 51 A 761 PHE ILE ILE ASN CYS ILE MET TYR LEU MET TYR TYR GLY SEQRES 52 A 761 CYS MET LYS VAL LEU HIS SER GLU ARG ILE THR SER LYS SEQRES 53 A 761 ALA LYS LEU CYS GLY ALA LEU SER LEU LEU ALA TRP ALA SEQRES 54 A 761 VAL ALA GLY PHE PHE PHE PHE GLN ASP ASP THR ASP TRP SEQRES 55 A 761 THR ARG SER ALA ALA ALA SER ARG ALA LEU ASN LYS PRO SEQRES 56 A 761 CYS LEU LEU LEU GLY PHE PHE GLY SER HIS ASP LEU TRP SEQRES 57 A 761 HIS ILE PHE GLY ALA LEU ALA GLY LEU PHE THR PHE ILE SEQRES 58 A 761 PHE VAL SER PHE VAL ASP ASP ASP LEU ILE ASN THR ARG SEQRES 59 A 761 LYS THR SER ILE ASN ILE PHE SEQRES 1 C 11 A A A A A A A A A A A SEQRES 1 D 11 U U U U U U U U U U U HET NAG B 1 14 HET NAG B 2 14 HET NAG E 1 14 HET NAG E 2 14 HET NAG A 801 14 HET ZN A 802 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG 5(C8 H15 N O6) FORMUL 7 ZN ZN 2+ HELIX 1 AA1 ASP A 64 ILE A 68 5 5 HELIX 2 AA2 ASP A 80 SER A 85 5 6 HELIX 3 AA3 ASP A 171 ASP A 176 1 6 HELIX 4 AA4 CYS A 206 ASN A 210 1 5 HELIX 5 AA5 THR A 264 LYS A 272 1 9 HELIX 6 AA6 TYR A 314 THR A 327 1 14 HELIX 7 AA7 PRO A 328 LEU A 331 5 4 HELIX 8 AA8 PHE A 332 ASN A 342 1 11 HELIX 9 AA9 GLN A 429 TYR A 433 1 5 HELIX 10 AB1 PRO A 434 ILE A 437 5 4 HELIX 11 AB2 ILE A 438 SER A 455 1 18 HELIX 12 AB3 THR A 456 CYS A 464 1 9 HELIX 13 AB4 ASN A 467 ALA A 471 5 5 HELIX 14 AB5 ALA A 479 ASN A 486 1 8 HELIX 15 AB6 ASN A 486 ARG A 504 1 19 HELIX 16 AB7 CYS A 518 HIS A 540 1 23 HELIX 17 AB8 THR A 552 VAL A 569 1 18 HELIX 18 AB9 SER A 575 ALA A 577 5 3 HELIX 19 AC1 TYR A 578 PHE A 596 1 19 HELIX 20 AC2 TYR A 601 SER A 624 1 24 HELIX 21 AC3 LYS A 631 THR A 652 1 22 HELIX 22 AC4 ASN A 659 HIS A 684 1 26 HELIX 23 AC5 THR A 689 ASP A 713 1 25 HELIX 24 AC6 SER A 720 LEU A 727 1 8 HELIX 25 AC7 GLY A 738 ASP A 762 1 25 HELIX 26 AC8 ASP A 763 ILE A 766 5 4 SHEET 1 AA1 5 VAL A 35 GLU A 39 0 SHEET 2 AA1 5 VAL A 56 LEU A 63 1 O VAL A 56 N LEU A 36 SHEET 3 AA1 5 GLN A 147 GLN A 154 -1 O VAL A 151 N LEU A 59 SHEET 4 AA1 5 LEU A 92 SER A 97 -1 N GLU A 93 O GLN A 154 SHEET 5 AA1 5 SER A 102 LEU A 107 -1 O LEU A 105 N VAL A 94 SHEET 1 AA2 4 MET A 46 LEU A 51 0 SHEET 2 AA2 4 ILE A 161 LEU A 170 -1 O ILE A 161 N LEU A 51 SHEET 3 AA2 4 LEU A 71 ILE A 78 -1 N LYS A 73 O THR A 168 SHEET 4 AA2 4 THR A 118 LEU A 123 -1 O LEU A 123 N THR A 72 SHEET 1 AA3 2 THR A 109 VAL A 110 0 SHEET 2 AA3 2 LYS A 115 LEU A 116 -1 O LEU A 116 N THR A 109 SHEET 1 AA4 4 THR A 186 LEU A 194 0 SHEET 2 AA4 4 LYS A 300 LEU A 309 -1 O PHE A 304 N LEU A 189 SHEET 3 AA4 4 GLN A 213 SER A 220 -1 N HIS A 215 O LYS A 307 SHEET 4 AA4 4 ARG A 258 PHE A 263 -1 O PHE A 263 N PHE A 214 SHEET 1 AA5 4 ILE A 200 ASN A 205 0 SHEET 2 AA5 4 SER A 273 ILE A 280 -1 O PHE A 274 N LEU A 204 SHEET 3 AA5 4 ALA A 226 PRO A 232 -1 N ILE A 229 O PHE A 277 SHEET 4 AA5 4 ARG A 251 PHE A 255 -1 O LEU A 253 N LEU A 228 SSBOND 1 CYS A 225 CYS A 287 1555 1555 2.03 SSBOND 2 CYS A 464 CYS A 542 1555 1555 2.04 SSBOND 3 CYS A 470 CYS A 731 1555 1555 2.05 LINK ND2 ASN A 205 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN A 210 C1 NAG A 801 1555 1555 1.43 LINK ND2 ASN A 234 C1 NAG E 1 1555 1555 1.40 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.39 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.41 LINK NE2 HIS A 540 ZN ZN A 802 1555 1555 2.16 LINK NE2 HIS A 740 ZN ZN A 802 1555 1555 2.00 LINK NE2 HIS A 744 ZN ZN A 802 1555 1555 2.05 CISPEP 1 LEU A 107 PRO A 108 0 -7.55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.500000 -0.866025 0.000000 326.53470 MTRIX2 2 0.866025 0.500000 0.000000 -87.49471 MTRIX3 2 0.000000 0.000000 1.000000 0.00000 MTRIX1 3 -0.500000 -0.866025 0.000000 565.57471 MTRIX2 3 0.866025 -0.500000 0.000000 151.54529 MTRIX3 3 0.000000 0.000000 1.000000 0.00000 MTRIX1 4 -1.000000 0.000000 0.000000 478.07999 MTRIX2 4 0.000000 -1.000000 0.000000 478.07999 MTRIX3 4 0.000000 0.000000 1.000000 0.00000 MTRIX1 5 -0.500000 0.866025 0.000000 151.54529 MTRIX2 5 -0.866025 -0.500000 0.000000 565.57471 MTRIX3 5 0.000000 0.000000 1.000000 0.00000 MTRIX1 6 0.500000 0.866025 0.000000 -87.49471 MTRIX2 6 -0.866025 0.500000 0.000000 326.53470 MTRIX3 6 0.000000 0.000000 1.000000 0.00000 MTRIX1 7 1.000000 0.000000 0.000000 0.00000 MTRIX2 7 0.000000 -1.000000 0.000000 478.07999 MTRIX3 7 0.000000 0.000000 -1.000000 478.07999 MTRIX1 8 0.500000 0.866025 0.000000 -87.49471 MTRIX2 8 0.866025 -0.500000 0.000000 151.54529 MTRIX3 8 0.000000 0.000000 -1.000000 478.07999 MTRIX1 9 0.500000 -0.866025 0.000000 326.53470 MTRIX2 9 -0.866025 -0.500000 0.000000 565.57471 MTRIX3 9 0.000000 0.000000 -1.000000 478.07999 MTRIX1 10 -0.500000 0.866025 0.000000 151.54529 MTRIX2 10 0.866025 0.500000 0.000000 -87.49471 MTRIX3 10 0.000000 0.000000 -1.000000 478.07999 MTRIX1 11 -0.500000 -0.866025 0.000000 565.57471 MTRIX2 11 -0.866025 0.500000 0.000000 326.53470 MTRIX3 11 0.000000 0.000000 -1.000000 478.07999 MTRIX1 12 -1.000000 0.000000 0.000000 478.07999 MTRIX2 12 0.000000 1.000000 0.000000 0.00000 MTRIX3 12 0.000000 0.000000 -1.000000 478.07999 CONECT 1301 5510 CONECT 1339 5566 CONECT 1462 1963 CONECT 1525 5538 CONECT 1963 1462 CONECT 2663 3227 CONECT 2713 4678 CONECT 3213 5580 CONECT 3227 2663 CONECT 4678 2713 CONECT 4748 5580 CONECT 4788 5580 CONECT 5510 1301 5511 5521 CONECT 5511 5510 5512 5518 CONECT 5512 5511 5513 5519 CONECT 5513 5512 5514 5520 CONECT 5514 5513 5515 5521 CONECT 5515 5514 5522 CONECT 5516 5517 5518 5523 CONECT 5517 5516 CONECT 5518 5511 5516 CONECT 5519 5512 CONECT 5520 5513 5524 CONECT 5521 5510 5514 CONECT 5522 5515 CONECT 5523 5516 CONECT 5524 5520 5525 5535 CONECT 5525 5524 5526 5532 CONECT 5526 5525 5527 5533 CONECT 5527 5526 5528 5534 CONECT 5528 5527 5529 5535 CONECT 5529 5528 5536 CONECT 5530 5531 5532 5537 CONECT 5531 5530 CONECT 5532 5525 5530 CONECT 5533 5526 CONECT 5534 5527 CONECT 5535 5524 5528 CONECT 5536 5529 CONECT 5537 5530 CONECT 5538 1525 5539 5549 CONECT 5539 5538 5540 5546 CONECT 5540 5539 5541 5547 CONECT 5541 5540 5542 5548 CONECT 5542 5541 5543 5549 CONECT 5543 5542 5550 CONECT 5544 5545 5546 5551 CONECT 5545 5544 CONECT 5546 5539 5544 CONECT 5547 5540 CONECT 5548 5541 5552 CONECT 5549 5538 5542 CONECT 5550 5543 CONECT 5551 5544 CONECT 5552 5548 5553 5563 CONECT 5553 5552 5554 5560 CONECT 5554 5553 5555 5561 CONECT 5555 5554 5556 5562 CONECT 5556 5555 5557 5563 CONECT 5557 5556 5564 CONECT 5558 5559 5560 5565 CONECT 5559 5558 CONECT 5560 5553 5558 CONECT 5561 5554 CONECT 5562 5555 CONECT 5563 5552 5556 CONECT 5564 5557 CONECT 5565 5558 CONECT 5566 1339 5567 5577 CONECT 5567 5566 5568 5574 CONECT 5568 5567 5569 5575 CONECT 5569 5568 5570 5576 CONECT 5570 5569 5571 5577 CONECT 5571 5570 5578 CONECT 5572 5573 5574 5579 CONECT 5573 5572 CONECT 5574 5567 5572 CONECT 5575 5568 CONECT 5576 5569 CONECT 5577 5566 5570 CONECT 5578 5571 CONECT 5579 5572 CONECT 5580 3213 4748 4788 MASTER 352 0 6 26 19 0 0 42 5577 3 83 61 END