HEADER LIGASE 29-DEC-24 9L93 TITLE CRYSTAL STRUCTURE OF NCOA4 IN COMPLEX WITH HERC2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE HERC2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HECT DOMAIN AND RCC1-LIKE DOMAIN-CONTAINING PROTEIN 2,HECT- COMPND 5 TYPE E3 UBIQUITIN TRANSFERASE HERC2; COMPND 6 EC: 2.3.2.26; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 4; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: NCOA-4,ANDROGEN RECEPTOR COACTIVATOR 70 KDA PROTEIN,70 KDA COMPND 12 AR-ACTIVATOR,70 KDA ANDROGEN RECEPTOR COACTIVATOR,ANDROGEN RECEPTOR- COMPND 13 ASSOCIATED PROTEIN OF 70 KDA,FERRITIN CARGO RECEPTOR NCOA4,RET- COMPND 14 ACTIVATING PROTEIN ELE1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HERC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NCOA4, ARA70, ELE1, RFG; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NCOA4, HERC2, IRON-SULFUR CLUSTER, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR H.B.LIU,L.F.PAN REVDAT 1 05-NOV-25 9L93 0 JRNL AUTH H.LIU,L.SHEN,X.GONG,X.ZHOU,Y.HUANG,Y.ZHOU,Z.GUO,H.GUO, JRNL AUTH 2 S.WANG,L.PAN JRNL TITL MECHANISTIC INSIGHTS INTO THE IRON-SULFUR CLUSTER-DEPENDENT JRNL TITL 2 INTERACTION OF THE AUTOPHAGY RECEPTOR NCOA4 WITH THE E3 JRNL TITL 3 LIGASE HERC2. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 69122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 40705422 JRNL DOI 10.1073/PNAS.2510269122 REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 2618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.6000 - 4.6100 0.99 2665 139 0.1558 0.1968 REMARK 3 2 4.6100 - 3.6600 0.99 2604 144 0.1341 0.1642 REMARK 3 3 3.6600 - 3.2000 1.00 2558 139 0.1534 0.1830 REMARK 3 4 3.2000 - 2.9100 1.00 2600 124 0.1660 0.2078 REMARK 3 5 2.9100 - 2.7000 1.00 2548 154 0.1779 0.2177 REMARK 3 6 2.7000 - 2.5400 1.00 2557 148 0.1806 0.2378 REMARK 3 7 2.5400 - 2.4100 1.00 2556 135 0.1777 0.2194 REMARK 3 8 2.4100 - 2.3100 1.00 2544 136 0.1701 0.2421 REMARK 3 9 2.3100 - 2.2200 1.00 2559 128 0.1692 0.2021 REMARK 3 10 2.2200 - 2.1400 1.00 2568 138 0.1643 0.1971 REMARK 3 11 2.1400 - 2.0800 1.00 2539 129 0.1716 0.2219 REMARK 3 12 2.0700 - 2.0200 1.00 2530 143 0.1730 0.2311 REMARK 3 13 2.0200 - 1.9600 1.00 2574 127 0.1765 0.2518 REMARK 3 14 1.9600 - 1.9100 1.00 2524 137 0.1908 0.2378 REMARK 3 15 1.9100 - 1.8700 1.00 2568 143 0.1924 0.2338 REMARK 3 16 1.8700 - 1.8300 1.00 2507 142 0.2021 0.2326 REMARK 3 17 1.8300 - 1.7900 1.00 2556 139 0.2081 0.2202 REMARK 3 18 1.7900 - 1.7600 1.00 2533 123 0.2297 0.2970 REMARK 3 19 1.7600 - 1.7300 1.00 2543 150 0.2556 0.3148 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.183 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.137 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.57 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3226 REMARK 3 ANGLE : 1.168 4356 REMARK 3 CHIRALITY : 0.075 464 REMARK 3 PLANARITY : 0.009 560 REMARK 3 DIHEDRAL : 5.206 438 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2550 THROUGH 2570 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1881 13.4865 -4.5405 REMARK 3 T TENSOR REMARK 3 T11: 0.3531 T22: 0.2575 REMARK 3 T33: 0.2113 T12: 0.0371 REMARK 3 T13: 0.0485 T23: 0.0559 REMARK 3 L TENSOR REMARK 3 L11: 5.3253 L22: 6.5691 REMARK 3 L33: 4.4367 L12: 1.2918 REMARK 3 L13: 0.7524 L23: -0.1349 REMARK 3 S TENSOR REMARK 3 S11: -0.1112 S12: 0.2978 S13: 0.4675 REMARK 3 S21: -0.5236 S22: 0.1471 S23: 0.0585 REMARK 3 S31: -0.7166 S32: 0.2511 S33: -0.0541 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2571 THROUGH 2630 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9767 2.2219 2.1142 REMARK 3 T TENSOR REMARK 3 T11: 0.1856 T22: 0.1841 REMARK 3 T33: 0.1682 T12: 0.0178 REMARK 3 T13: 0.0190 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 4.0476 L22: 4.5773 REMARK 3 L33: 3.8187 L12: 0.1332 REMARK 3 L13: 0.7307 L23: 0.3558 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.1216 S13: 0.0157 REMARK 3 S21: -0.1207 S22: 0.0645 S23: -0.0898 REMARK 3 S31: -0.0704 S32: 0.2036 S33: -0.1298 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2631 THROUGH 2644 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2371 -9.8480 -15.2245 REMARK 3 T TENSOR REMARK 3 T11: 0.4075 T22: 0.5176 REMARK 3 T33: 0.5339 T12: 0.0864 REMARK 3 T13: 0.0097 T23: -0.1146 REMARK 3 L TENSOR REMARK 3 L11: 6.2970 L22: 9.1102 REMARK 3 L33: 6.8278 L12: 1.8484 REMARK 3 L13: -1.1127 L23: 5.3544 REMARK 3 S TENSOR REMARK 3 S11: 0.2820 S12: 1.3248 S13: -1.4295 REMARK 3 S21: -0.0044 S22: 0.1847 S23: -1.0298 REMARK 3 S31: 0.7607 S32: 1.5678 S33: -0.4778 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2645 THROUGH 2700 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7957 -11.8783 -6.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.2057 T22: 0.1032 REMARK 3 T33: 0.1607 T12: -0.0081 REMARK 3 T13: -0.0257 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 5.7817 L22: 4.1524 REMARK 3 L33: 3.0821 L12: 0.1822 REMARK 3 L13: -0.9763 L23: -0.7809 REMARK 3 S TENSOR REMARK 3 S11: -0.0116 S12: 0.1114 S13: -0.1275 REMARK 3 S21: -0.2626 S22: 0.0318 S23: -0.1777 REMARK 3 S31: 0.2656 S32: -0.0096 S33: -0.0218 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2550 THROUGH 2630 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6411 -30.9168 21.0993 REMARK 3 T TENSOR REMARK 3 T11: 0.1819 T22: 0.2999 REMARK 3 T33: 0.1709 T12: -0.0024 REMARK 3 T13: 0.0024 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 3.9702 L22: 3.9573 REMARK 3 L33: 3.6959 L12: 0.1792 REMARK 3 L13: -2.2146 L23: -0.0233 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: -0.4005 S13: -0.0593 REMARK 3 S21: 0.1753 S22: 0.0382 S23: -0.2340 REMARK 3 S31: 0.0547 S32: 0.5535 S33: -0.0669 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2631 THROUGH 2700 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8916 -13.6886 40.7299 REMARK 3 T TENSOR REMARK 3 T11: 0.2454 T22: 0.1977 REMARK 3 T33: 0.1789 T12: -0.0008 REMARK 3 T13: 0.0024 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 4.8839 L22: 4.5024 REMARK 3 L33: 5.6551 L12: -0.1453 REMARK 3 L13: -0.1845 L23: 0.7220 REMARK 3 S TENSOR REMARK 3 S11: 0.0209 S12: 0.1875 S13: 0.0546 REMARK 3 S21: -0.2988 S22: -0.0182 S23: -0.4324 REMARK 3 S31: -0.0339 S32: 0.4107 S33: 0.0124 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 396 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.1958 -8.2661 17.8476 REMARK 3 T TENSOR REMARK 3 T11: 0.7457 T22: 0.8065 REMARK 3 T33: 0.4984 T12: 0.0181 REMARK 3 T13: -0.1021 T23: -0.1538 REMARK 3 L TENSOR REMARK 3 L11: 2.2676 L22: 4.5235 REMARK 3 L33: 3.4618 L12: 3.0692 REMARK 3 L13: 2.6625 L23: 3.9551 REMARK 3 S TENSOR REMARK 3 S11: 0.2868 S12: -2.7105 S13: 0.6609 REMARK 3 S21: 1.9384 S22: -0.3901 S23: -0.0942 REMARK 3 S31: -1.2157 S32: 0.2738 S33: 0.0474 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 404 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8523 -14.9067 9.2119 REMARK 3 T TENSOR REMARK 3 T11: 0.2293 T22: 0.1640 REMARK 3 T33: 0.1781 T12: -0.0051 REMARK 3 T13: -0.0336 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 7.8327 L22: 5.6945 REMARK 3 L33: 3.8884 L12: -5.6434 REMARK 3 L13: 5.4131 L23: -4.3905 REMARK 3 S TENSOR REMARK 3 S11: -0.2193 S12: 0.0419 S13: 0.1287 REMARK 3 S21: 0.4466 S22: 0.0312 S23: -0.2393 REMARK 3 S31: -0.2377 S32: 0.1298 S33: 0.1716 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 422 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4638 -7.3327 18.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.4194 T22: 0.3318 REMARK 3 T33: 0.2843 T12: -0.0503 REMARK 3 T13: -0.0734 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 4.4823 L22: 2.0201 REMARK 3 L33: 6.6547 L12: 1.8221 REMARK 3 L13: 5.4461 L23: 1.9919 REMARK 3 S TENSOR REMARK 3 S11: 0.0979 S12: 0.3165 S13: 0.1222 REMARK 3 S21: -0.0208 S22: 0.0371 S23: -0.0462 REMARK 3 S31: 0.1155 S32: 0.5419 S33: -0.0878 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 435 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5464 0.4681 18.1383 REMARK 3 T TENSOR REMARK 3 T11: 0.2805 T22: 0.3673 REMARK 3 T33: 0.2900 T12: -0.0217 REMARK 3 T13: -0.0064 T23: 0.0365 REMARK 3 L TENSOR REMARK 3 L11: 3.1378 L22: 9.7334 REMARK 3 L33: 7.3991 L12: -5.2485 REMARK 3 L13: -3.6391 L23: 4.5014 REMARK 3 S TENSOR REMARK 3 S11: -0.0229 S12: -0.0912 S13: 0.3776 REMARK 3 S21: 0.5285 S22: 0.0614 S23: -0.1844 REMARK 3 S31: 0.8390 S32: 0.6880 S33: 0.0133 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 396 THROUGH 403 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.0050 -18.1543 33.3526 REMARK 3 T TENSOR REMARK 3 T11: 0.6222 T22: 0.7444 REMARK 3 T33: 0.8269 T12: -0.1575 REMARK 3 T13: -0.1514 T23: -0.1245 REMARK 3 L TENSOR REMARK 3 L11: 8.1282 L22: 4.1199 REMARK 3 L33: 5.7038 L12: 4.4142 REMARK 3 L13: 6.3754 L23: 2.3611 REMARK 3 S TENSOR REMARK 3 S11: 0.4804 S12: 0.5099 S13: -2.0188 REMARK 3 S21: -0.4310 S22: -0.3907 S23: 1.2934 REMARK 3 S31: 1.8021 S32: -2.3449 S33: -0.3400 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 404 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.7887 -10.0800 36.2698 REMARK 3 T TENSOR REMARK 3 T11: 0.2698 T22: 0.1998 REMARK 3 T33: 0.2084 T12: 0.0066 REMARK 3 T13: -0.0435 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 7.7821 L22: 8.1880 REMARK 3 L33: 7.6219 L12: -2.4056 REMARK 3 L13: 5.5236 L23: -6.9557 REMARK 3 S TENSOR REMARK 3 S11: 0.1355 S12: 0.1382 S13: -0.0507 REMARK 3 S21: -0.4987 S22: 0.1129 S23: 0.3412 REMARK 3 S31: 0.3250 S32: 0.2503 S33: -0.2184 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 422 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5347 -16.9905 23.4547 REMARK 3 T TENSOR REMARK 3 T11: 0.3315 T22: 0.2667 REMARK 3 T33: 0.2423 T12: 0.0717 REMARK 3 T13: -0.0491 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 9.6417 L22: 8.5426 REMARK 3 L33: 9.3814 L12: 4.9855 REMARK 3 L13: 6.8842 L23: 7.6576 REMARK 3 S TENSOR REMARK 3 S11: -0.2394 S12: 0.1860 S13: -0.0899 REMARK 3 S21: 0.2007 S22: 0.4310 S23: -0.1838 REMARK 3 S31: -0.1246 S32: 0.2041 S33: -0.1998 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 436 THROUGH 442 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0155 -24.9579 16.4857 REMARK 3 T TENSOR REMARK 3 T11: 0.2796 T22: 0.2567 REMARK 3 T33: 0.3437 T12: 0.0119 REMARK 3 T13: 0.0361 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 3.8346 L22: 2.4248 REMARK 3 L33: 5.1895 L12: -2.8622 REMARK 3 L13: -4.3393 L23: 3.4498 REMARK 3 S TENSOR REMARK 3 S11: -0.4846 S12: 0.2127 S13: -0.5659 REMARK 3 S21: 0.0596 S22: 0.1310 S23: 0.4380 REMARK 3 S31: -0.0865 S32: -0.4911 S33: 0.4702 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9L93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 08-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055199. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97853 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51268 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 56.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% V/V 2-PROPANOL, 0.1 M SODIUM REMARK 280 CITRATE TRIBASIC DIHYDRATE (PH 5.5), 20% W/V POLYETHYLENE GLYCOL REMARK 280 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 20.94300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2537 REMARK 465 ALA A 2538 REMARK 465 MET A 2539 REMARK 465 SER A 2540 REMARK 465 THR A 2541 REMARK 465 GLY A 2542 REMARK 465 ALA A 2543 REMARK 465 VAL A 2544 REMARK 465 VAL A 2545 REMARK 465 THR A 2546 REMARK 465 GLU A 2547 REMARK 465 SER A 2548 REMARK 465 GLN A 2549 REMARK 465 GLY B 2537 REMARK 465 ALA B 2538 REMARK 465 MET B 2539 REMARK 465 SER B 2540 REMARK 465 THR B 2541 REMARK 465 GLY B 2542 REMARK 465 ALA B 2543 REMARK 465 VAL B 2544 REMARK 465 VAL B 2545 REMARK 465 THR B 2546 REMARK 465 GLU B 2547 REMARK 465 SER B 2548 REMARK 465 GLN B 2549 REMARK 465 GLY C 392 REMARK 465 ALA C 393 REMARK 465 MET C 394 REMARK 465 GLN C 395 REMARK 465 GLY D 392 REMARK 465 ALA D 393 REMARK 465 MET D 394 REMARK 465 GLN D 395 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A2584 -114.04 47.03 REMARK 500 ASP A2600 -155.35 -100.18 REMARK 500 SER A2636 -5.33 66.48 REMARK 500 HIS A2638 3.46 59.01 REMARK 500 LYS A2657 160.56 85.02 REMARK 500 GLN A2686 114.55 -166.44 REMARK 500 GLU B2584 -115.84 52.53 REMARK 500 ASP B2600 -154.16 -100.67 REMARK 500 LYS B2657 163.41 78.50 REMARK 500 GLN B2686 115.64 -163.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES C 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 404 SG REMARK 620 2 FES C 501 S1 112.5 REMARK 620 3 FES C 501 S2 110.7 104.0 REMARK 620 4 CYS C 410 SG 106.9 111.1 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES C 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 416 SG REMARK 620 2 FES C 501 S1 111.6 REMARK 620 3 FES C 501 S2 111.2 104.1 REMARK 620 4 CYS C 422 SG 108.1 110.1 111.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 404 SG REMARK 620 2 FES D 501 S1 112.9 REMARK 620 3 FES D 501 S2 114.4 102.3 REMARK 620 4 CYS D 410 SG 105.5 111.9 109.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 416 SG REMARK 620 2 FES D 501 S1 112.7 REMARK 620 3 FES D 501 S2 110.0 104.5 REMARK 620 4 CYS D 422 SG 105.8 112.0 112.0 REMARK 620 N 1 2 3 DBREF 9L93 A 2539 2700 UNP O95714 HERC2_HUMAN 2539 2700 DBREF 9L93 B 2539 2700 UNP O95714 HERC2_HUMAN 2539 2700 DBREF 9L93 C 395 442 UNP Q13772 NCOA4_HUMAN 395 442 DBREF 9L93 D 395 442 UNP Q13772 NCOA4_HUMAN 395 442 SEQADV 9L93 GLY A 2537 UNP O95714 EXPRESSION TAG SEQADV 9L93 ALA A 2538 UNP O95714 EXPRESSION TAG SEQADV 9L93 GLY B 2537 UNP O95714 EXPRESSION TAG SEQADV 9L93 ALA B 2538 UNP O95714 EXPRESSION TAG SEQADV 9L93 GLY C 392 UNP Q13772 EXPRESSION TAG SEQADV 9L93 ALA C 393 UNP Q13772 EXPRESSION TAG SEQADV 9L93 MET C 394 UNP Q13772 EXPRESSION TAG SEQADV 9L93 GLY D 392 UNP Q13772 EXPRESSION TAG SEQADV 9L93 ALA D 393 UNP Q13772 EXPRESSION TAG SEQADV 9L93 MET D 394 UNP Q13772 EXPRESSION TAG SEQRES 1 A 164 GLY ALA MET SER THR GLY ALA VAL VAL THR GLU SER GLN SEQRES 2 A 164 THR TYR LYS LYS ARG ALA ASP PHE LEU SER ASN ASP ASP SEQRES 3 A 164 TYR ALA VAL TYR VAL ARG GLU ASN ILE GLN VAL GLY MET SEQRES 4 A 164 MET VAL ARG CYS CYS ARG ALA TYR GLU GLU VAL CYS GLU SEQRES 5 A 164 GLY ASP VAL GLY LYS VAL ILE LYS LEU ASP ARG ASP GLY SEQRES 6 A 164 LEU HIS ASP LEU ASN VAL GLN CYS ASP TRP GLN GLN LYS SEQRES 7 A 164 GLY GLY THR TYR TRP VAL ARG TYR ILE HIS VAL GLU LEU SEQRES 8 A 164 ILE GLY TYR PRO PRO PRO SER SER SER SER HIS ILE LYS SEQRES 9 A 164 ILE GLY ASP LYS VAL ARG VAL LYS ALA SER VAL THR THR SEQRES 10 A 164 PRO LYS TYR LYS TRP GLY SER VAL THR HIS GLN SER VAL SEQRES 11 A 164 GLY VAL VAL LYS ALA PHE SER ALA ASN GLY LYS ASP ILE SEQRES 12 A 164 ILE VAL ASP PHE PRO GLN GLN SER HIS TRP THR GLY LEU SEQRES 13 A 164 LEU SER GLU MET GLU LEU VAL PRO SEQRES 1 B 164 GLY ALA MET SER THR GLY ALA VAL VAL THR GLU SER GLN SEQRES 2 B 164 THR TYR LYS LYS ARG ALA ASP PHE LEU SER ASN ASP ASP SEQRES 3 B 164 TYR ALA VAL TYR VAL ARG GLU ASN ILE GLN VAL GLY MET SEQRES 4 B 164 MET VAL ARG CYS CYS ARG ALA TYR GLU GLU VAL CYS GLU SEQRES 5 B 164 GLY ASP VAL GLY LYS VAL ILE LYS LEU ASP ARG ASP GLY SEQRES 6 B 164 LEU HIS ASP LEU ASN VAL GLN CYS ASP TRP GLN GLN LYS SEQRES 7 B 164 GLY GLY THR TYR TRP VAL ARG TYR ILE HIS VAL GLU LEU SEQRES 8 B 164 ILE GLY TYR PRO PRO PRO SER SER SER SER HIS ILE LYS SEQRES 9 B 164 ILE GLY ASP LYS VAL ARG VAL LYS ALA SER VAL THR THR SEQRES 10 B 164 PRO LYS TYR LYS TRP GLY SER VAL THR HIS GLN SER VAL SEQRES 11 B 164 GLY VAL VAL LYS ALA PHE SER ALA ASN GLY LYS ASP ILE SEQRES 12 B 164 ILE VAL ASP PHE PRO GLN GLN SER HIS TRP THR GLY LEU SEQRES 13 B 164 LEU SER GLU MET GLU LEU VAL PRO SEQRES 1 C 51 GLY ALA MET GLN ASP PRO CYS LYS VAL GLU GLU VAL CYS SEQRES 2 C 51 ARG ALA ASN GLU PRO CYS THR SER PHE ALA GLU CYS VAL SEQRES 3 C 51 CYS ASP GLU ASN CYS GLU LYS GLU ALA LEU TYR LYS TRP SEQRES 4 C 51 LEU LEU LYS LYS GLU GLY LYS ASP LYS ASN GLY MET SEQRES 1 D 51 GLY ALA MET GLN ASP PRO CYS LYS VAL GLU GLU VAL CYS SEQRES 2 D 51 ARG ALA ASN GLU PRO CYS THR SER PHE ALA GLU CYS VAL SEQRES 3 D 51 CYS ASP GLU ASN CYS GLU LYS GLU ALA LEU TYR LYS TRP SEQRES 4 D 51 LEU LEU LYS LYS GLU GLY LYS ASP LYS ASN GLY MET HET FES C 501 4 HET FES D 501 4 HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 5 FES 2(FE2 S2) FORMUL 7 HOH *505(H2 O) HELIX 1 AA1 LYS A 2553 PHE A 2557 5 5 HELIX 2 AA2 SER A 2559 ILE A 2571 1 13 HELIX 3 AA3 ARG A 2621 ILE A 2623 5 3 HELIX 4 AA4 LYS B 2553 PHE B 2557 5 5 HELIX 5 AA5 SER B 2559 ILE B 2571 1 13 HELIX 6 AA6 ARG B 2621 ILE B 2623 5 3 HELIX 7 AA7 LYS C 399 CYS C 404 1 6 HELIX 8 AA8 SER C 412 CYS C 416 5 5 HELIX 9 AA9 ASN C 421 GLU C 435 1 15 HELIX 10 AB1 LYS D 399 CYS D 404 1 6 HELIX 11 AB2 SER D 412 CYS D 416 5 5 HELIX 12 AB3 ASN D 421 GLY D 436 1 16 SHEET 1 AA1 5 GLY A2616 VAL A2620 0 SHEET 2 AA1 5 VAL A2607 TRP A2611 -1 N VAL A2607 O VAL A2620 SHEET 3 AA1 5 VAL A2591 LEU A2597 -1 N ILE A2595 O GLN A2608 SHEET 4 AA1 5 MET A2576 CYS A2579 -1 N VAL A2577 O GLY A2592 SHEET 5 AA1 5 VAL A2625 GLY A2629 -1 O GLY A2629 N MET A2576 SHEET 1 AA2 5 GLN A2686 LEU A2692 0 SHEET 2 AA2 5 ASP A2678 PHE A2683 -1 N VAL A2681 O TRP A2689 SHEET 3 AA2 5 GLY A2667 PHE A2672 -1 N LYS A2670 O ILE A2680 SHEET 4 AA2 5 LYS A2644 VAL A2647 -1 N VAL A2645 O GLY A2667 SHEET 5 AA2 5 MET A2696 LEU A2698 -1 O GLU A2697 N ARG A2646 SHEET 1 AA3 5 GLY B2616 VAL B2620 0 SHEET 2 AA3 5 VAL B2607 TRP B2611 -1 N TRP B2611 O GLY B2616 SHEET 3 AA3 5 VAL B2591 LEU B2597 -1 N ILE B2595 O GLN B2608 SHEET 4 AA3 5 MET B2576 CYS B2579 -1 N VAL B2577 O GLY B2592 SHEET 5 AA3 5 VAL B2625 GLY B2629 -1 O GLY B2629 N MET B2576 SHEET 1 AA4 5 GLN B2686 LEU B2692 0 SHEET 2 AA4 5 ASP B2678 PHE B2683 -1 N VAL B2681 O TRP B2689 SHEET 3 AA4 5 GLY B2667 PHE B2672 -1 N VAL B2668 O ASP B2682 SHEET 4 AA4 5 LYS B2644 VAL B2647 -1 N VAL B2645 O GLY B2667 SHEET 5 AA4 5 MET B2696 LEU B2698 -1 O GLU B2697 N ARG B2646 LINK SG CYS C 404 FE2 FES C 501 1555 1555 2.34 LINK SG CYS C 410 FE2 FES C 501 1555 1555 2.32 LINK SG CYS C 416 FE1 FES C 501 1555 1555 2.35 LINK SG CYS C 422 FE1 FES C 501 1555 1555 2.30 LINK SG CYS D 404 FE2 FES D 501 1555 1555 2.33 LINK SG CYS D 410 FE2 FES D 501 1555 1555 2.38 LINK SG CYS D 416 FE1 FES D 501 1555 1555 2.31 LINK SG CYS D 422 FE1 FES D 501 1555 1555 2.32 CRYST1 68.456 41.886 86.258 90.00 95.93 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014608 0.000000 0.001517 0.00000 SCALE2 0.000000 0.023874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011655 0.00000 CONECT 2478 3156 CONECT 2524 3156 CONECT 2568 3155 CONECT 2612 3155 CONECT 2850 3160 CONECT 2896 3160 CONECT 2940 3159 CONECT 2984 3159 CONECT 3155 2568 2612 3157 3158 CONECT 3156 2478 2524 3157 3158 CONECT 3157 3155 3156 CONECT 3158 3155 3156 CONECT 3159 2940 2984 3161 3162 CONECT 3160 2850 2896 3161 3162 CONECT 3161 3159 3160 CONECT 3162 3159 3160 MASTER 523 0 2 12 20 0 0 6 3663 4 16 34 END