HEADER UNKNOWN FUNCTION 01-JAN-25 9LA6 TITLE CRYSTAL STRUCTURE OF ANTI-CRISPR PROTEIN ACRIE7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL ANTIVIRAL PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS MACEDONICUS; SOURCE 3 ORGANISM_TAXID: 59310; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS A PROTEIN, HYPOTHETICAL ANTIVIRAL PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR H.ZHANG,Z.LIU REVDAT 1 07-JAN-26 9LA6 0 JRNL AUTH H.ZHANG,Z.LIU JRNL TITL HYPOTHETICAL ANTIVIRAL PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 9123 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.334 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.6200 - 6.3000 0.97 1193 137 0.1690 0.2132 REMARK 3 2 6.3000 - 5.0100 0.99 1248 143 0.2568 0.3416 REMARK 3 3 5.0000 - 4.3700 0.99 1191 133 0.2429 0.3300 REMARK 3 4 4.3700 - 3.9700 0.99 1232 136 0.2542 0.3817 REMARK 3 5 3.9700 - 3.6900 0.98 1215 136 0.2759 0.3647 REMARK 3 6 3.6900 - 3.4700 0.99 1230 135 0.2892 0.3747 REMARK 3 7 3.4700 - 3.3000 0.99 1238 135 0.3217 0.3966 REMARK 3 8 3.3000 - 3.1500 0.99 1197 135 0.3252 0.3833 REMARK 3 9 3.1500 - 3.0300 0.98 1261 138 0.3531 0.3250 REMARK 3 10 3.0300 - 2.9300 0.98 1176 127 0.3416 0.4026 REMARK 3 11 2.9300 - 2.8400 0.99 1263 144 0.3905 0.4527 REMARK 3 12 2.8400 - 2.7600 0.98 1198 128 0.3300 0.3424 REMARK 3 13 2.7600 - 2.6800 0.98 1231 135 0.3845 0.4679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.475 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.385 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 62.67 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2514 REMARK 3 ANGLE : 0.635 3396 REMARK 3 CHIRALITY : 0.043 390 REMARK 3 PLANARITY : 0.005 432 REMARK 3 DIHEDRAL : 4.521 339 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 02-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300054939. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17657 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.680 REMARK 200 RESOLUTION RANGE LOW (A) : 42.620 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, HEPES/SODIUM HYDROXIDE, REMARK 280 LIQUID DIFFUSION, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.16500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.99850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.16500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.99850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 105 REMARK 465 GLU A 106 REMARK 465 ASP B 105 REMARK 465 GLU B 106 REMARK 465 ASP C 105 REMARK 465 GLU C 106 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 77 33.98 -99.08 REMARK 500 CYS A 80 17.49 55.21 REMARK 500 REMARK 500 REMARK: NULL DBREF 9LA6 A 1 106 PDB 9LA6 9LA6 1 106 DBREF 9LA6 B 1 106 PDB 9LA6 9LA6 1 106 DBREF 9LA6 C 1 106 PDB 9LA6 9LA6 1 106 SEQRES 1 A 106 MET ILE GLY SER GLU LYS GLN VAL ASN TRP ALA LYS SER SEQRES 2 A 106 ILE ILE GLU LYS GLU VAL GLU ALA TRP GLU ALA ILE GLY SEQRES 3 A 106 VAL ASP VAL ARG GLU VAL ALA ALA PHE LEU ARG SER ILE SEQRES 4 A 106 SER ASP ALA ARG VAL ILE ILE ASP ASN ARG ASN LEU ILE SEQRES 5 A 106 HIS PHE GLN SER SER GLY ILE SER TYR SER LEU GLU SER SEQRES 6 A 106 SER PRO LEU ASN SER PRO ILE PHE LEU ARG ARG PHE SER SEQRES 7 A 106 ALA CYS SER VAL GLY PHE GLU GLU ILE PRO THR ALA LEU SEQRES 8 A 106 GLN ARG ILE ARG SER VAL TYR THR ALA LYS LEU LEU GLU SEQRES 9 A 106 ASP GLU SEQRES 1 B 106 MET ILE GLY SER GLU LYS GLN VAL ASN TRP ALA LYS SER SEQRES 2 B 106 ILE ILE GLU LYS GLU VAL GLU ALA TRP GLU ALA ILE GLY SEQRES 3 B 106 VAL ASP VAL ARG GLU VAL ALA ALA PHE LEU ARG SER ILE SEQRES 4 B 106 SER ASP ALA ARG VAL ILE ILE ASP ASN ARG ASN LEU ILE SEQRES 5 B 106 HIS PHE GLN SER SER GLY ILE SER TYR SER LEU GLU SER SEQRES 6 B 106 SER PRO LEU ASN SER PRO ILE PHE LEU ARG ARG PHE SER SEQRES 7 B 106 ALA CYS SER VAL GLY PHE GLU GLU ILE PRO THR ALA LEU SEQRES 8 B 106 GLN ARG ILE ARG SER VAL TYR THR ALA LYS LEU LEU GLU SEQRES 9 B 106 ASP GLU SEQRES 1 C 106 MET ILE GLY SER GLU LYS GLN VAL ASN TRP ALA LYS SER SEQRES 2 C 106 ILE ILE GLU LYS GLU VAL GLU ALA TRP GLU ALA ILE GLY SEQRES 3 C 106 VAL ASP VAL ARG GLU VAL ALA ALA PHE LEU ARG SER ILE SEQRES 4 C 106 SER ASP ALA ARG VAL ILE ILE ASP ASN ARG ASN LEU ILE SEQRES 5 C 106 HIS PHE GLN SER SER GLY ILE SER TYR SER LEU GLU SER SEQRES 6 C 106 SER PRO LEU ASN SER PRO ILE PHE LEU ARG ARG PHE SER SEQRES 7 C 106 ALA CYS SER VAL GLY PHE GLU GLU ILE PRO THR ALA LEU SEQRES 8 C 106 GLN ARG ILE ARG SER VAL TYR THR ALA LYS LEU LEU GLU SEQRES 9 C 106 ASP GLU FORMUL 4 HOH *5(H2 O) HELIX 1 AA1 SER A 4 ALA A 24 1 21 HELIX 2 AA2 VAL A 29 ILE A 39 1 11 HELIX 3 AA3 ASP A 41 ASP A 47 1 7 HELIX 4 AA4 GLY A 58 SER A 65 1 8 HELIX 5 AA5 SER A 66 ASN A 69 5 4 HELIX 6 AA6 SER A 70 ARG A 75 1 6 HELIX 7 AA7 ARG A 76 SER A 78 5 3 HELIX 8 AA8 GLY A 83 GLU A 85 5 3 HELIX 9 AA9 GLU A 86 GLU A 104 1 19 HELIX 10 AB1 SER B 4 ALA B 24 1 21 HELIX 11 AB2 VAL B 29 SER B 38 1 10 HELIX 12 AB3 ASP B 41 HIS B 53 1 13 HELIX 13 AB4 ILE B 59 SER B 65 1 7 HELIX 14 AB5 SER B 66 ASN B 69 5 4 HELIX 15 AB6 SER B 70 ARG B 75 1 6 HELIX 16 AB7 ARG B 76 SER B 78 5 3 HELIX 17 AB8 GLU B 86 LEU B 103 1 18 HELIX 18 AB9 SER C 4 ALA C 24 1 21 HELIX 19 AC1 VAL C 29 ILE C 39 1 11 HELIX 20 AC2 ASP C 41 ARG C 49 1 9 HELIX 21 AC3 GLY C 58 SER C 66 1 9 HELIX 22 AC4 PRO C 67 ASN C 69 5 3 HELIX 23 AC5 SER C 70 ARG C 75 1 6 HELIX 24 AC6 ARG C 76 SER C 78 5 3 HELIX 25 AC7 GLY C 83 GLU C 85 5 3 HELIX 26 AC8 GLU C 86 LEU C 103 1 18 CRYST1 62.330 61.997 87.260 90.00 102.36 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016044 0.000000 0.003516 0.00000 SCALE2 0.000000 0.016130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011732 0.00000 MASTER 245 0 0 26 0 0 0 6 2477 3 0 27 END