HEADER VIRAL PROTEIN/RNA 04-JAN-25 9LCK TITLE CRYO-EM STRUCTURE OF INFLUENZA POLYMERASE BOUND TO CRNA PROMOTER COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA-DIRECTED RNA POLYMERASE CATALYTIC SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: POLYMERASE BASIC PROTEIN 1,PB1,RNA-DIRECTED RNA POLYMERASE COMPND 11 SUBUNIT P1; COMPND 12 EC: 2.7.7.48; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: PB2-S1; COMPND 16 CHAIN: C; COMPND 17 SYNONYM: POLYMERASE PB2; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: 3'-CRNA; COMPND 21 CHAIN: D; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: 5'-CRNA; COMPND 25 CHAIN: E; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SOURCE 3 A/GOOSE/GUANGDONG/1/1996 H5N1 GENOTYPE GS/GD); SOURCE 4 ORGANISM_TAXID: 93838; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SOURCE 10 A/GOOSE/GUANGDONG/1/1996 H5N1 GENOTYPE GS/GD); SOURCE 11 ORGANISM_TAXID: 93838; SOURCE 12 GENE: PB1; SOURCE 13 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SOURCE 17 A/GOOSE/GUANGDONG/1/1996 H5N1 GENOTYPE GS/GD); SOURCE 18 ORGANISM_TAXID: 93838; SOURCE 19 GENE: PB2; SOURCE 20 EXPRESSION_SYSTEM: INSECT CELL EXPRESSION VECTOR PTIE1; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 266783; SOURCE 22 MOL_ID: 4; SOURCE 23 SYNTHETIC: YES; SOURCE 24 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SOURCE 25 A/GOOSE/GUANGDONG/1/1996 H5N1 GENOTYPE GS/GD); SOURCE 26 ORGANISM_TAXID: 93838; SOURCE 27 MOL_ID: 5; SOURCE 28 SYNTHETIC: YES; SOURCE 29 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN SOURCE 30 A/GOOSE/GUANGDONG/1/1996 H5N1 GENOTYPE GS/GD); SOURCE 31 ORGANISM_TAXID: 93838 KEYWDS INFLUENZA POLYMERASE, VIRAL PROTEIN/RNA, VIRAL PROTEIN-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Y.X.WU,H.H.LIANG REVDAT 1 21-JAN-26 9LCK 0 JRNL AUTH Y.X.WU JRNL TITL CRYO-EM MAP OF INFLUENZA POLYMERASE BOUND TO CRNA PROMOTER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.980 REMARK 3 NUMBER OF PARTICLES : 144735 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9LCK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 10-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055393. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : INFLUENZA POLYMERASE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.80 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : DIRECT ELECTRON DE-16 (4K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 PHE A 4 REMARK 465 VAL A 5 REMARK 465 ARG A 6 REMARK 465 GLN A 7 REMARK 465 CYS A 8 REMARK 465 PHE A 9 REMARK 465 ASN A 10 REMARK 465 PRO A 11 REMARK 465 MET A 12 REMARK 465 ILE A 13 REMARK 465 VAL A 14 REMARK 465 GLU A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 GLU A 18 REMARK 465 LYS A 19 REMARK 465 ALA A 20 REMARK 465 MET A 21 REMARK 465 LYS A 22 REMARK 465 GLU A 23 REMARK 465 TYR A 24 REMARK 465 GLY A 25 REMARK 465 GLU A 26 REMARK 465 ASP A 27 REMARK 465 PRO A 28 REMARK 465 LYS A 29 REMARK 465 ILE A 30 REMARK 465 GLU A 31 REMARK 465 THR A 32 REMARK 465 ASN A 33 REMARK 465 LYS A 34 REMARK 465 PHE A 35 REMARK 465 ALA A 36 REMARK 465 ALA A 37 REMARK 465 ILE A 38 REMARK 465 CYS A 39 REMARK 465 THR A 40 REMARK 465 HIS A 41 REMARK 465 LEU A 42 REMARK 465 GLU A 43 REMARK 465 VAL A 44 REMARK 465 CYS A 45 REMARK 465 PHE A 46 REMARK 465 MET A 47 REMARK 465 TYR A 48 REMARK 465 SER A 49 REMARK 465 ASP A 50 REMARK 465 PHE A 51 REMARK 465 HIS A 52 REMARK 465 PHE A 53 REMARK 465 ILE A 54 REMARK 465 ASP A 55 REMARK 465 GLU A 56 REMARK 465 ARG A 57 REMARK 465 GLY A 58 REMARK 465 GLU A 59 REMARK 465 SER A 60 REMARK 465 THR A 61 REMARK 465 ILE A 62 REMARK 465 ILE A 63 REMARK 465 GLU A 64 REMARK 465 SER A 65 REMARK 465 GLY A 66 REMARK 465 ASP A 67 REMARK 465 PRO A 68 REMARK 465 ASN A 69 REMARK 465 ALA A 70 REMARK 465 LEU A 71 REMARK 465 LEU A 72 REMARK 465 LYS A 73 REMARK 465 HIS A 74 REMARK 465 ARG A 75 REMARK 465 PHE A 76 REMARK 465 GLU A 77 REMARK 465 ILE A 78 REMARK 465 ILE A 79 REMARK 465 GLU A 80 REMARK 465 GLY A 81 REMARK 465 ARG A 82 REMARK 465 ASP A 83 REMARK 465 ARG A 84 REMARK 465 THR A 85 REMARK 465 MET A 86 REMARK 465 ALA A 87 REMARK 465 TRP A 88 REMARK 465 THR A 89 REMARK 465 VAL A 90 REMARK 465 VAL A 91 REMARK 465 ASN A 92 REMARK 465 SER A 93 REMARK 465 ILE A 94 REMARK 465 CYS A 95 REMARK 465 ASN A 96 REMARK 465 THR A 97 REMARK 465 THR A 98 REMARK 465 GLY A 99 REMARK 465 VAL A 100 REMARK 465 GLU A 101 REMARK 465 LYS A 102 REMARK 465 PRO A 103 REMARK 465 LYS A 104 REMARK 465 PHE A 105 REMARK 465 LEU A 106 REMARK 465 PRO A 107 REMARK 465 ASP A 108 REMARK 465 LEU A 109 REMARK 465 TYR A 110 REMARK 465 ASP A 111 REMARK 465 TYR A 112 REMARK 465 LYS A 113 REMARK 465 GLU A 114 REMARK 465 ASN A 115 REMARK 465 ARG A 116 REMARK 465 PHE A 117 REMARK 465 ILE A 118 REMARK 465 GLU A 119 REMARK 465 ILE A 120 REMARK 465 GLY A 121 REMARK 465 VAL A 122 REMARK 465 THR A 123 REMARK 465 ARG A 124 REMARK 465 ARG A 125 REMARK 465 GLU A 126 REMARK 465 VAL A 127 REMARK 465 HIS A 128 REMARK 465 THR A 129 REMARK 465 TYR A 130 REMARK 465 TYR A 131 REMARK 465 LEU A 132 REMARK 465 GLU A 133 REMARK 465 LYS A 134 REMARK 465 ALA A 135 REMARK 465 ASN A 136 REMARK 465 LYS A 137 REMARK 465 ILE A 138 REMARK 465 LYS A 139 REMARK 465 SER A 140 REMARK 465 GLU A 141 REMARK 465 LYS A 142 REMARK 465 THR A 143 REMARK 465 HIS A 144 REMARK 465 ILE A 145 REMARK 465 HIS A 146 REMARK 465 ILE A 147 REMARK 465 PHE A 148 REMARK 465 SER A 149 REMARK 465 PHE A 150 REMARK 465 THR A 151 REMARK 465 GLY A 152 REMARK 465 GLU A 153 REMARK 465 GLU A 154 REMARK 465 MET A 155 REMARK 465 ALA A 156 REMARK 465 THR A 157 REMARK 465 LYS A 158 REMARK 465 ALA A 159 REMARK 465 ASP A 160 REMARK 465 TYR A 161 REMARK 465 THR A 162 REMARK 465 LEU A 163 REMARK 465 ASP A 164 REMARK 465 GLU A 165 REMARK 465 GLU A 166 REMARK 465 SER A 167 REMARK 465 ARG A 168 REMARK 465 ALA A 169 REMARK 465 ARG A 170 REMARK 465 ILE A 171 REMARK 465 LYS A 172 REMARK 465 THR A 173 REMARK 465 ARG A 174 REMARK 465 LEU A 175 REMARK 465 PHE A 176 REMARK 465 THR A 177 REMARK 465 ILE A 178 REMARK 465 ARG A 179 REMARK 465 GLN A 180 REMARK 465 GLU A 181 REMARK 465 MET A 182 REMARK 465 ALA A 183 REMARK 465 SER A 184 REMARK 465 ARG A 185 REMARK 465 GLY A 186 REMARK 465 LEU A 187 REMARK 465 TRP A 188 REMARK 465 ASP A 189 REMARK 465 SER A 190 REMARK 465 PHE A 191 REMARK 465 ARG A 192 REMARK 465 GLN A 193 REMARK 465 SER A 194 REMARK 465 GLU A 195 REMARK 465 ARG A 196 REMARK 465 GLY A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 PHE B 185 REMARK 465 GLN B 186 REMARK 465 ARG B 187 REMARK 465 LYS B 188 REMARK 465 ARG B 189 REMARK 465 ARG B 190 REMARK 465 VAL B 191 REMARK 465 ARG B 192 REMARK 465 ASP B 193 REMARK 465 ASN B 194 REMARK 465 MET B 195 REMARK 465 THR B 196 REMARK 465 LYS B 197 REMARK 465 LYS B 198 REMARK 465 MET B 199 REMARK 465 VAL B 200 REMARK 465 THR B 201 REMARK 465 GLN B 202 REMARK 465 ARG B 203 REMARK 465 THR B 204 REMARK 465 ILE B 205 REMARK 465 VAL B 632 REMARK 465 SER B 633 REMARK 465 HIS B 634 REMARK 465 LYS B 635 REMARK 465 GLU B 636 REMARK 465 ILE B 637 REMARK 465 GLU B 638 REMARK 465 SER B 639 REMARK 465 VAL B 640 REMARK 465 ASN B 641 REMARK 465 ASN B 642 REMARK 465 ALA B 643 REMARK 465 VAL B 644 REMARK 465 VAL B 645 REMARK 465 MET B 646 REMARK 465 PRO B 647 REMARK 465 ALA B 648 REMARK 465 HIS B 649 REMARK 465 GLY B 650 REMARK 465 PRO B 651 REMARK 465 ALA B 652 REMARK 465 LYS B 653 REMARK 465 SER B 654 REMARK 465 MET B 655 REMARK 465 GLU B 656 REMARK 465 TYR B 657 REMARK 465 ASP B 658 REMARK 465 ALA B 659 REMARK 465 VAL B 660 REMARK 465 LYS B 669 REMARK 465 ARG B 670 REMARK 465 ASN B 671 REMARK 465 ARG B 672 REMARK 465 SER B 673 REMARK 465 ILE B 674 REMARK 465 LEU B 675 REMARK 465 ASN B 676 REMARK 465 THR B 677 REMARK 465 SER B 678 REMARK 465 GLN B 679 REMARK 465 ARG B 680 REMARK 465 GLY B 681 REMARK 465 ILE B 682 REMARK 465 LEU B 683 REMARK 465 GLU B 684 REMARK 465 ASP B 685 REMARK 465 GLU B 686 REMARK 465 GLN B 687 REMARK 465 MET B 688 REMARK 465 TYR B 689 REMARK 465 GLN B 690 REMARK 465 LYS B 691 REMARK 465 CYS B 692 REMARK 465 CYS B 693 REMARK 465 ASN B 694 REMARK 465 LEU B 695 REMARK 465 PHE B 696 REMARK 465 GLU B 697 REMARK 465 LYS B 698 REMARK 465 PHE B 699 REMARK 465 PHE B 700 REMARK 465 PRO B 701 REMARK 465 SER B 702 REMARK 465 SER B 703 REMARK 465 SER B 704 REMARK 465 TYR B 705 REMARK 465 ARG B 706 REMARK 465 ARG B 707 REMARK 465 PRO B 708 REMARK 465 VAL B 709 REMARK 465 GLY B 710 REMARK 465 ILE B 711 REMARK 465 SER B 712 REMARK 465 SER B 713 REMARK 465 MET B 714 REMARK 465 VAL B 715 REMARK 465 GLU B 716 REMARK 465 ALA B 717 REMARK 465 MET B 718 REMARK 465 VAL B 719 REMARK 465 SER B 720 REMARK 465 ARG B 721 REMARK 465 ALA B 722 REMARK 465 ARG B 723 REMARK 465 ILE B 724 REMARK 465 ASP B 725 REMARK 465 ALA B 726 REMARK 465 ARG B 727 REMARK 465 ILE B 728 REMARK 465 ASP B 729 REMARK 465 PHE B 730 REMARK 465 GLU B 731 REMARK 465 SER B 732 REMARK 465 GLY B 733 REMARK 465 ARG B 734 REMARK 465 ILE B 735 REMARK 465 LYS B 736 REMARK 465 LYS B 737 REMARK 465 GLU B 738 REMARK 465 GLU B 739 REMARK 465 PHE B 740 REMARK 465 ALA B 741 REMARK 465 GLU B 742 REMARK 465 ILE B 743 REMARK 465 MET B 744 REMARK 465 LYS B 745 REMARK 465 ILE B 746 REMARK 465 CYS B 747 REMARK 465 SER B 748 REMARK 465 THR B 749 REMARK 465 ILE B 750 REMARK 465 GLU B 751 REMARK 465 GLU B 752 REMARK 465 LEU B 753 REMARK 465 ARG B 754 REMARK 465 ARG B 755 REMARK 465 GLN B 756 REMARK 465 LYS B 757 REMARK 465 ASP C 83 REMARK 465 ALA C 84 REMARK 465 GLY C 85 REMARK 465 SER C 86 REMARK 465 ASP C 87 REMARK 465 ARG C 88 REMARK 465 VAL C 89 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 219 OG1 THR B 223 2.18 REMARK 500 O LEU B 419 OG SER B 422 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 218 52.63 -92.59 REMARK 500 LEU A 284 -60.41 -100.94 REMARK 500 ILE A 354 69.98 61.14 REMARK 500 HIS A 452 33.44 -99.95 REMARK 500 TRP A 537 41.21 -104.60 REMARK 500 LYS A 615 -146.80 57.19 REMARK 500 THR B 296 105.20 -161.44 REMARK 500 ASN B 328 49.00 32.29 REMARK 500 MET B 411 -72.32 68.27 REMARK 500 SER B 443 -68.67 -94.41 REMARK 500 SER B 444 -57.57 -125.03 REMARK 500 PHE B 512 -128.06 58.49 REMARK 500 ASP B 538 47.16 36.80 REMARK 500 ARG B 560 16.11 58.86 REMARK 500 CYS B 561 56.68 -92.73 REMARK 500 SER B 585 -9.83 76.37 REMARK 500 PRO B 607 -179.71 -66.43 REMARK 500 CYS B 625 32.95 -97.30 REMARK 500 MET C 66 -51.06 -120.37 REMARK 500 SER C 79 -3.52 69.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-66772 RELATED DB: EMDB DBREF 9LCK A 1 716 UNP Q9Q0U9 PA_I96A0 1 716 DBREF 9LCK B 1 757 UNP Q9Q0V0 RDRP_I96A0 1 757 DBREF 9LCK C 61 103 UNP P0DOG5 PB2S1_I96A0 61 103 DBREF 9LCK D 3 11 PDB 9LCK 9LCK 3 11 DBREF 9LCK E 1 18 PDB 9LCK 9LCK 1 18 SEQADV 9LCK ILE A 201 UNP Q9Q0U9 VAL 201 CONFLICT SEQADV 9LCK ILE A 504 UNP Q9Q0U9 LEU 504 CONFLICT SEQADV 9LCK LYS A 536 UNP Q9Q0U9 ARG 536 CONFLICT SEQADV 9LCK GLU A 544 UNP Q9Q0U9 ARG 544 CONFLICT SEQADV 9LCK ALA A 553 UNP Q9Q0U9 GLU 553 CONFLICT SEQADV 9LCK LEU A 585 UNP Q9Q0U9 PRO 585 CONFLICT SEQADV 9LCK LEU A 586 UNP Q9Q0U9 PHE 586 CONFLICT SEQADV 9LCK MET A 628 UNP Q9Q0U9 VAL 628 CONFLICT SEQADV 9LCK LYS A 716 UNP Q9Q0U9 ARG 716 CONFLICT SEQADV 9LCK LYS B 97 UNP Q9Q0V0 GLU 97 CONFLICT SEQADV 9LCK ILE B 113 UNP Q9Q0V0 VAL 113 CONFLICT SEQADV 9LCK ASN B 134 UNP Q9Q0V0 LYS 134 CONFLICT SEQADV 9LCK GLN B 460 UNP Q9Q0V0 GLU 460 CONFLICT SEQADV 9LCK SER B 478 UNP Q9Q0V0 THR 478 CONFLICT SEQADV 9LCK PHE B 490 UNP Q9Q0V0 CYS 490 CONFLICT SEQADV 9LCK ILE B 535 UNP Q9Q0V0 MET 535 CONFLICT SEQADV 9LCK ASN B 536 UNP Q9Q0V0 ASP 536 CONFLICT SEQADV 9LCK THR B 558 UNP Q9Q0V0 PRO 558 CONFLICT SEQADV 9LCK LEU B 598 UNP Q9Q0V0 PRO 598 CONFLICT SEQADV 9LCK VAL B 609 UNP Q9Q0V0 ALA 609 CONFLICT SEQADV 9LCK CYS B 610 UNP Q9Q0V0 GLY 610 CONFLICT SEQADV 9LCK ARG B 754 UNP Q9Q0V0 GLY 754 CONFLICT SEQRES 1 A 716 MET GLU ASP PHE VAL ARG GLN CYS PHE ASN PRO MET ILE SEQRES 2 A 716 VAL GLU LEU ALA GLU LYS ALA MET LYS GLU TYR GLY GLU SEQRES 3 A 716 ASP PRO LYS ILE GLU THR ASN LYS PHE ALA ALA ILE CYS SEQRES 4 A 716 THR HIS LEU GLU VAL CYS PHE MET TYR SER ASP PHE HIS SEQRES 5 A 716 PHE ILE ASP GLU ARG GLY GLU SER THR ILE ILE GLU SER SEQRES 6 A 716 GLY ASP PRO ASN ALA LEU LEU LYS HIS ARG PHE GLU ILE SEQRES 7 A 716 ILE GLU GLY ARG ASP ARG THR MET ALA TRP THR VAL VAL SEQRES 8 A 716 ASN SER ILE CYS ASN THR THR GLY VAL GLU LYS PRO LYS SEQRES 9 A 716 PHE LEU PRO ASP LEU TYR ASP TYR LYS GLU ASN ARG PHE SEQRES 10 A 716 ILE GLU ILE GLY VAL THR ARG ARG GLU VAL HIS THR TYR SEQRES 11 A 716 TYR LEU GLU LYS ALA ASN LYS ILE LYS SER GLU LYS THR SEQRES 12 A 716 HIS ILE HIS ILE PHE SER PHE THR GLY GLU GLU MET ALA SEQRES 13 A 716 THR LYS ALA ASP TYR THR LEU ASP GLU GLU SER ARG ALA SEQRES 14 A 716 ARG ILE LYS THR ARG LEU PHE THR ILE ARG GLN GLU MET SEQRES 15 A 716 ALA SER ARG GLY LEU TRP ASP SER PHE ARG GLN SER GLU SEQRES 16 A 716 ARG GLY GLU GLU THR ILE GLU GLU ARG PHE GLU ILE THR SEQRES 17 A 716 GLY THR MET CYS ARG LEU ALA ASP GLN SER LEU PRO PRO SEQRES 18 A 716 ASN PHE SER SER LEU GLU LYS PHE ARG ALA TYR VAL ASP SEQRES 19 A 716 GLY PHE GLU PRO ASN GLY CYS ILE GLU GLY LYS LEU SER SEQRES 20 A 716 GLN MET SER LYS GLU VAL ASN ALA ARG ILE GLU PRO PHE SEQRES 21 A 716 LEU LYS THR THR PRO ARG PRO LEU ARG LEU PRO ASP GLY SEQRES 22 A 716 PRO PRO CYS SER GLN ARG SER LYS PHE LEU LEU MET ASP SEQRES 23 A 716 ALA LEU LYS LEU SER ILE GLU ASP PRO SER HIS GLU GLY SEQRES 24 A 716 GLU GLY ILE PRO LEU TYR ASP ALA ILE LYS CYS MET LYS SEQRES 25 A 716 THR PHE PHE GLY TRP LYS GLU PRO ASN ILE VAL LYS PRO SEQRES 26 A 716 HIS GLU LYS GLY ILE ASN PRO ASN TYR LEU LEU ALA TRP SEQRES 27 A 716 LYS GLN VAL LEU ALA GLU LEU GLN ASP ILE GLU ASN GLU SEQRES 28 A 716 GLU LYS ILE PRO LYS THR LYS ASN MET ARG LYS THR SER SEQRES 29 A 716 GLN LEU LYS TRP ALA LEU GLY GLU ASN MET ALA PRO GLU SEQRES 30 A 716 LYS VAL ASP PHE GLU ASP CYS LYS ASP VAL SER ASP LEU SEQRES 31 A 716 ARG GLN TYR ASP SER ASP GLU PRO LYS PRO ARG SER LEU SEQRES 32 A 716 ALA SER TRP ILE GLN SER GLU PHE ASN LYS ALA CYS GLU SEQRES 33 A 716 LEU THR ASP SER SER TRP ILE GLU LEU ASP GLU ILE GLY SEQRES 34 A 716 GLU ASP VAL ALA PRO ILE GLU HIS ILE ALA SER MET ARG SEQRES 35 A 716 ARG ASN TYR PHE THR ALA GLU VAL SER HIS CYS ARG ALA SEQRES 36 A 716 THR GLU TYR ILE MET LYS GLY VAL TYR ILE ASN THR ALA SEQRES 37 A 716 LEU LEU ASN ALA SER CYS ALA ALA MET ASP ASP PHE GLN SEQRES 38 A 716 LEU ILE PRO MET ILE SER LYS CYS ARG THR LYS GLU GLY SEQRES 39 A 716 ARG ARG LYS THR ASN LEU TYR GLY PHE ILE ILE LYS GLY SEQRES 40 A 716 ARG SER HIS LEU ARG ASN ASP THR ASP VAL VAL ASN PHE SEQRES 41 A 716 VAL SER MET GLU PHE SER LEU THR ASP PRO ARG LEU GLU SEQRES 42 A 716 PRO HIS LYS TRP GLU LYS TYR CYS VAL LEU GLU ILE GLY SEQRES 43 A 716 ASP MET LEU LEU ARG THR ALA ILE GLY GLN VAL SER ARG SEQRES 44 A 716 PRO MET PHE LEU TYR VAL ARG THR ASN GLY THR SER LYS SEQRES 45 A 716 ILE LYS MET LYS TRP GLY MET GLU MET ARG ARG CYS LEU SEQRES 46 A 716 LEU GLN SER LEU GLN GLN ILE GLU SER MET ILE GLU ALA SEQRES 47 A 716 GLU SER SER VAL LYS GLU LYS ASP MET THR LYS GLU PHE SEQRES 48 A 716 PHE GLU ASN LYS SER GLU THR TRP PRO ILE GLY GLU SER SEQRES 49 A 716 PRO LYS GLY MET GLU GLU GLY SER ILE GLY LYS VAL CYS SEQRES 50 A 716 ARG THR LEU LEU ALA LYS SER VAL PHE ASN SER LEU TYR SEQRES 51 A 716 ALA SER PRO GLN LEU GLU GLY PHE SER ALA GLU SER ARG SEQRES 52 A 716 LYS LEU LEU LEU ILE VAL GLN ALA LEU ARG ASP ASN LEU SEQRES 53 A 716 GLU PRO GLY THR PHE ASP LEU GLY GLY LEU TYR GLU ALA SEQRES 54 A 716 ILE GLU GLU CYS LEU ILE ASN ASP PRO TRP VAL LEU LEU SEQRES 55 A 716 ASN ALA SER TRP PHE ASN SER PHE LEU THR HIS ALA LEU SEQRES 56 A 716 LYS SEQRES 1 B 757 MET ASP VAL ASN PRO THR LEU LEU PHE LEU LYS VAL PRO SEQRES 2 B 757 ALA GLN ASN ALA ILE SER THR THR PHE PRO TYR THR GLY SEQRES 3 B 757 ASP PRO PRO TYR SER HIS GLY THR GLY THR GLY TYR THR SEQRES 4 B 757 MET ASP THR VAL ASN ARG THR HIS GLN TYR SER GLU LYS SEQRES 5 B 757 GLY LYS TRP THR THR ASN THR GLU THR GLY ALA PRO GLN SEQRES 6 B 757 LEU ASN PRO ILE ASP GLY PRO LEU PRO GLU ASP ASN GLU SEQRES 7 B 757 PRO SER GLY TYR ALA GLN THR ASP CYS VAL LEU GLU ALA SEQRES 8 B 757 MET ALA PHE LEU GLU LYS SER HIS PRO GLY ILE PHE GLU SEQRES 9 B 757 ASN SER CYS LEU GLU THR MET GLU ILE VAL GLN GLN THR SEQRES 10 B 757 ARG VAL ASP LYS LEU THR GLN GLY ARG GLN THR TYR ASP SEQRES 11 B 757 TRP THR LEU ASN ARG ASN GLN PRO ALA ALA THR ALA LEU SEQRES 12 B 757 ALA ASN THR ILE GLU VAL PHE ARG SER ASN GLY LEU THR SEQRES 13 B 757 ALA ASN GLU SER GLY ARG LEU ILE ASP PHE LEU LYS ASP SEQRES 14 B 757 VAL MET GLU SER MET ASP LYS GLY GLU MET GLU ILE ILE SEQRES 15 B 757 THR HIS PHE GLN ARG LYS ARG ARG VAL ARG ASP ASN MET SEQRES 16 B 757 THR LYS LYS MET VAL THR GLN ARG THR ILE GLY LYS LYS SEQRES 17 B 757 LYS GLN ARG LEU ASN LYS ARG SER TYR LEU ILE ARG ALA SEQRES 18 B 757 LEU THR LEU ASN THR MET THR LYS ASP ALA GLU ARG GLY SEQRES 19 B 757 LYS LEU LYS ARG ARG ALA ILE ALA THR PRO GLY MET GLN SEQRES 20 B 757 ILE ARG GLY PHE VAL TYR PHE VAL GLU THR LEU ALA ARG SEQRES 21 B 757 SER ILE CYS GLU LYS LEU GLU GLN SER GLY LEU PRO VAL SEQRES 22 B 757 GLY GLY ASN GLU LYS LYS ALA LYS LEU ALA ASN VAL VAL SEQRES 23 B 757 ARG LYS MET MET THR ASN SER GLN ASP THR GLU LEU SER SEQRES 24 B 757 PHE THR ILE THR GLY ASP ASN THR LYS TRP ASN GLU ASN SEQRES 25 B 757 GLN ASN PRO ARG MET PHE LEU ALA MET ILE THR TYR ILE SEQRES 26 B 757 THR ARG ASN GLN PRO GLU TRP PHE ARG ASN VAL LEU SER SEQRES 27 B 757 ILE ALA PRO ILE MET PHE SER ASN LYS MET ALA ARG LEU SEQRES 28 B 757 GLY LYS GLY TYR MET PHE GLU SER LYS SER MET LYS LEU SEQRES 29 B 757 ARG THR GLN ILE PRO ALA GLU MET LEU ALA SER ILE ASP SEQRES 30 B 757 LEU LYS TYR PHE ASN GLU SER THR ARG LYS LYS ILE GLU SEQRES 31 B 757 LYS ILE ARG PRO LEU LEU ILE ASP GLY THR ALA SER LEU SEQRES 32 B 757 SER PRO GLY MET MET MET GLY MET PHE ASN MET LEU SER SEQRES 33 B 757 THR VAL LEU GLY VAL SER ILE LEU ASN LEU GLY GLN LYS SEQRES 34 B 757 ARG TYR THR LYS THR THR TYR TRP TRP ASP GLY LEU GLN SEQRES 35 B 757 SER SER ASP ASP PHE ALA LEU ILE VAL ASN ALA PRO ASN SEQRES 36 B 757 HIS GLU GLY ILE GLN ALA GLY VAL ASP ARG PHE TYR ARG SEQRES 37 B 757 THR CYS LYS LEU VAL GLY ILE ASN MET SER LYS LYS LYS SEQRES 38 B 757 SER TYR ILE ASN ARG THR GLY THR PHE GLU PHE THR SER SEQRES 39 B 757 PHE PHE TYR ARG TYR GLY PHE VAL ALA ASN PHE SER MET SEQRES 40 B 757 GLU LEU PRO SER PHE GLY VAL SER GLY ILE ASN GLU SER SEQRES 41 B 757 ALA ASP MET SER ILE GLY VAL THR VAL ILE LYS ASN ASN SEQRES 42 B 757 MET ILE ASN ASN ASP LEU GLY PRO ALA THR ALA GLN MET SEQRES 43 B 757 ALA LEU GLN LEU PHE ILE LYS ASP TYR ARG TYR THR TYR SEQRES 44 B 757 ARG CYS HIS ARG GLY ASP THR GLN ILE GLN THR ARG ARG SEQRES 45 B 757 SER PHE GLU LEU LYS LYS LEU TRP GLU GLN THR ARG SER SEQRES 46 B 757 LYS ALA GLY LEU LEU VAL SER ASP GLY GLY PRO ASN LEU SEQRES 47 B 757 TYR ASN ILE ARG ASN LEU HIS ILE PRO GLU VAL CYS LEU SEQRES 48 B 757 LYS TRP GLU LEU MET ASP GLU ASP TYR GLN GLY ARG LEU SEQRES 49 B 757 CYS ASN PRO LEU ASN PRO PHE VAL SER HIS LYS GLU ILE SEQRES 50 B 757 GLU SER VAL ASN ASN ALA VAL VAL MET PRO ALA HIS GLY SEQRES 51 B 757 PRO ALA LYS SER MET GLU TYR ASP ALA VAL ALA THR THR SEQRES 52 B 757 HIS SER TRP ILE PRO LYS ARG ASN ARG SER ILE LEU ASN SEQRES 53 B 757 THR SER GLN ARG GLY ILE LEU GLU ASP GLU GLN MET TYR SEQRES 54 B 757 GLN LYS CYS CYS ASN LEU PHE GLU LYS PHE PHE PRO SER SEQRES 55 B 757 SER SER TYR ARG ARG PRO VAL GLY ILE SER SER MET VAL SEQRES 56 B 757 GLU ALA MET VAL SER ARG ALA ARG ILE ASP ALA ARG ILE SEQRES 57 B 757 ASP PHE GLU SER GLY ARG ILE LYS LYS GLU GLU PHE ALA SEQRES 58 B 757 GLU ILE MET LYS ILE CYS SER THR ILE GLU GLU LEU ARG SEQRES 59 B 757 ARG GLN LYS SEQRES 1 C 43 LYS ARG ILE MET GLU MET ILE PRO GLU ARG ASN GLU GLN SEQRES 2 C 43 GLY GLN THR LEU TRP SER LYS THR ASN ASP ALA GLY SER SEQRES 3 C 43 ASP ARG VAL MET VAL SER PRO LEU ALA VAL THR TRP TRP SEQRES 4 C 43 ASN ARG ASN GLY SEQRES 1 D 9 A A C A C C C U U SEQRES 1 E 18 A G C A A A A G C A G G G SEQRES 2 E 18 U G U U U HELIX 1 AA1 GLY A 209 SER A 218 1 10 HELIX 2 AA2 SER A 225 GLY A 235 1 11 HELIX 3 AA3 GLY A 240 MET A 249 1 10 HELIX 4 AA4 ILE A 302 PHE A 314 1 13 HELIX 5 AA5 ILE A 330 ALA A 343 1 14 HELIX 6 AA6 GLU A 344 ILE A 348 5 5 HELIX 7 AA7 THR A 363 LEU A 370 1 8 HELIX 8 AA8 SER A 405 GLU A 416 1 12 HELIX 9 AA9 ALA A 433 SER A 451 1 19 HELIX 10 AB1 CYS A 453 ALA A 476 1 24 HELIX 11 AB2 ASP A 529 GLU A 538 5 10 HELIX 12 AB3 LYS A 572 TRP A 577 1 6 HELIX 13 AB4 GLY A 578 MET A 581 5 4 HELIX 14 AB5 ARG A 582 GLU A 604 1 23 HELIX 15 AB6 ASP A 606 ASN A 614 1 9 HELIX 16 AB7 SER A 632 TYR A 650 1 19 HELIX 17 AB8 SER A 652 ASP A 674 1 23 HELIX 18 AB9 ASP A 682 CYS A 693 1 12 HELIX 19 AC1 ASP A 697 LEU A 715 1 19 HELIX 20 AC2 PRO B 5 LYS B 11 5 7 HELIX 21 AC3 ALA B 17 PHE B 22 5 6 HELIX 22 AC4 GLY B 35 TYR B 49 1 15 HELIX 23 AC5 GLN B 84 HIS B 99 1 16 HELIX 24 AC6 GLY B 101 GLN B 116 1 16 HELIX 25 AC7 ARG B 118 GLN B 124 5 7 HELIX 26 AC8 PRO B 138 ASN B 153 1 16 HELIX 27 AC9 ALA B 157 GLY B 161 5 5 HELIX 28 AD1 ARG B 162 LYS B 176 1 15 HELIX 29 AD2 ASN B 213 LEU B 222 1 10 HELIX 30 AD3 GLY B 245 LYS B 265 1 21 HELIX 31 AD4 GLY B 275 THR B 291 1 17 HELIX 32 AD5 ASN B 314 THR B 326 1 13 HELIX 33 AD6 PRO B 330 ASN B 346 1 17 HELIX 34 AD7 ASN B 382 ARG B 393 1 12 HELIX 35 AD8 ASN B 413 LEU B 426 1 14 HELIX 36 AD9 GLN B 428 LYS B 433 1 6 HELIX 37 AE1 ASN B 455 LEU B 472 1 18 HELIX 38 AE2 ASN B 518 ASN B 537 1 20 HELIX 39 AE3 GLY B 540 ARG B 560 1 21 HELIX 40 AE4 ARG B 572 THR B 583 1 12 HELIX 41 AE5 LEU B 590 GLY B 594 5 5 HELIX 42 AE6 PRO B 607 LYS B 612 1 6 HELIX 43 AE7 ASP B 617 CYS B 625 1 9 HELIX 44 AE8 LYS C 61 MET C 66 5 6 HELIX 45 AE9 PRO C 93 ASN C 102 1 10 SHEET 1 AA1 6 GLU A 258 PRO A 259 0 SHEET 2 AA1 6 GLY A 679 THR A 680 -1 O THR A 680 N GLU A 258 SHEET 3 AA1 6 TYR B 483 ARG B 486 -1 O ILE B 484 N GLY A 679 SHEET 4 AA1 6 PHE B 300 THR B 303 -1 N THR B 301 O ASN B 485 SHEET 5 AA1 6 PHE B 447 VAL B 451 -1 O VAL B 451 N PHE B 300 SHEET 6 AA1 6 TRP B 438 GLN B 442 -1 N ASP B 439 O ILE B 450 SHEET 1 AA2 4 LEU A 290 GLU A 293 0 SHEET 2 AA2 4 ARG A 496 LYS A 506 -1 O THR A 498 N ILE A 292 SHEET 3 AA2 4 PHE A 480 THR A 491 -1 N MET A 485 O GLY A 502 SHEET 4 AA2 4 LYS A 358 MET A 360 -1 N MET A 360 O PHE A 480 SHEET 1 AA3 7 TRP A 317 LYS A 324 0 SHEET 2 AA3 7 CYS A 541 ARG A 551 -1 O VAL A 542 N VAL A 323 SHEET 3 AA3 7 GLN A 556 SER A 571 -1 O LEU A 563 N LEU A 543 SHEET 4 AA3 7 VAL A 517 SER A 526 -1 N VAL A 518 O THR A 570 SHEET 5 AA3 7 ARG A 496 LYS A 506 -1 N PHE A 503 O MET A 523 SHEET 6 AA3 7 PHE A 480 THR A 491 -1 N MET A 485 O GLY A 502 SHEET 7 AA3 7 SER A 420 SER A 421 -1 N SER A 421 O ARG A 490 SHEET 1 AA4 4 GLU A 377 LYS A 378 0 SHEET 2 AA4 4 LEU B 364 PRO B 369 1 O ARG B 365 N GLU A 377 SHEET 3 AA4 4 GLY B 354 SER B 359 -1 N TYR B 355 O ILE B 368 SHEET 4 AA4 4 LEU A 390 GLN A 392 -1 N ARG A 391 O GLU B 358 SHEET 1 AA5 3 GLY A 627 GLY A 631 0 SHEET 2 AA5 3 TRP A 619 SER A 624 -1 N TRP A 619 O GLY A 631 SHEET 3 AA5 3 ASP B 2 VAL B 3 -1 O ASP B 2 N GLU A 623 SHEET 1 AA6 2 LYS B 54 THR B 57 0 SHEET 2 AA6 2 PRO B 64 ASN B 67 -1 O ASN B 67 N LYS B 54 SHEET 1 AA7 2 THR B 128 TYR B 129 0 SHEET 2 AA7 2 ASN B 136 GLN B 137 -1 O GLN B 137 N THR B 128 SHEET 1 AA8 2 MET B 179 THR B 183 0 SHEET 2 AA8 2 LYS B 208 LEU B 212 -1 O GLN B 210 N ILE B 181 SHEET 1 AA9 5 ALA B 240 THR B 243 0 SHEET 2 AA9 5 THR B 223 THR B 228 -1 N MET B 227 O ILE B 241 SHEET 3 AA9 5 MET B 348 ARG B 350 1 O MET B 348 N LEU B 224 SHEET 4 AA9 5 THR B 400 SER B 402 -1 O ALA B 401 N ALA B 349 SHEET 5 AA9 5 LEU B 396 ILE B 397 -1 N ILE B 397 O THR B 400 SHEET 1 AB1 3 THR B 489 GLU B 491 0 SHEET 2 AB1 3 PHE B 495 ARG B 498 -1 O TYR B 497 N PHE B 490 SHEET 3 AB1 3 PHE B 501 ASN B 504 -1 O ALA B 503 N PHE B 496 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 8259 LYS A 716 TER 18085 PRO B 668 TER 18686 GLY C 103 TER 18970 U D 11 TER 19555 U E 18 MASTER 497 0 0 45 38 0 0 6 9930 5 0 122 END