HEADER TOXIN 05-JAN-25 9LCW TITLE GRIMONTIA HOLLISAE THERMOSTABLE DIRECT HEMOLYSIN K88A MUTANT IN TITLE 2 COMPLEX WITH 1-NT LONG 3'-OVERHANG DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOSTABLE DIRECT HEMOLYSIN-RELATED; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*CP*TP*CP*TP*AP*TP*AP*GP*AP*GP*A)-3'); COMPND 8 CHAIN: E, F; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GRIMONTIA HOLLISAE; SOURCE 3 ORGANISM_COMMON: VIBRIO HOLLISAE; SOURCE 4 ORGANISM_TAXID: 673; SOURCE 5 GENE: TDH3, NCTC11645_00376; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS DUAL ROLE OF HEMOLYSIN AND NUCLEASE, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR P.Y.HSIAO,T.K.WU,C.Y.CHANG REVDAT 1 14-JAN-26 9LCW 0 JRNL AUTH P.Y.HSIAO,T.K.WU,C.Y.CHANG JRNL TITL GRIMONTIA HOLLISAE THERMOSTABLE DIRECT HEMOLYSIN K88A MUTANT JRNL TITL 2 IN COMPLEX WITH 1-NT LONG 3'-OVERHANG DSDNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 73.0 REMARK 3 NUMBER OF REFLECTIONS : 20729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1084 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.71 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.78 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1038 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 50.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4713 REMARK 3 NUCLEIC ACID ATOMS : 446 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.486 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.279 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.526 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.897 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.847 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5321 ; 0.005 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 4391 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7344 ; 1.147 ; 1.672 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10092 ; 0.393 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 612 ; 7.584 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ; 8.409 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 695 ;14.928 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 818 ; 0.047 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6036 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1236 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2460 ; 3.582 ; 4.536 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2460 ; 3.582 ; 4.536 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3068 ; 5.626 ; 8.150 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3069 ; 5.625 ; 8.150 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2861 ; 3.963 ; 5.438 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2861 ; 3.962 ; 5.438 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4277 ; 6.448 ; 9.920 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5737 ; 8.771 ;54.660 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5738 ; 8.771 ;54.680 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 9LCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29284 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.707 REMARK 200 RESOLUTION RANGE LOW (A) : 29.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 85.1 REMARK 200 DATA REDUNDANCY : 2.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 11.0250 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.71 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.74 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.43300 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM AMMONIUM SULFATE, 100 MM BIS REMARK 280 TRIS/ HYDROCHLORIC ACID PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.82800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 1 REMARK 465 GLU A 2 REMARK 465 LEU A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 ILE A 6 REMARK 465 PRO A 7 REMARK 465 PHE A 8 REMARK 465 PRO A 9 REMARK 465 SER A 10 REMARK 465 PRO A 11 REMARK 465 PHE B 1 REMARK 465 GLU B 2 REMARK 465 LEU B 3 REMARK 465 PRO B 4 REMARK 465 SER B 5 REMARK 465 ILE B 6 REMARK 465 PRO B 7 REMARK 465 PHE B 8 REMARK 465 PRO B 9 REMARK 465 SER B 10 REMARK 465 PRO B 11 REMARK 465 PHE C 1 REMARK 465 GLU C 2 REMARK 465 LEU C 3 REMARK 465 PRO C 4 REMARK 465 SER C 5 REMARK 465 ILE C 6 REMARK 465 PRO C 7 REMARK 465 PHE C 8 REMARK 465 PRO C 9 REMARK 465 SER C 10 REMARK 465 PRO C 11 REMARK 465 PHE D 1 REMARK 465 GLU D 2 REMARK 465 LEU D 3 REMARK 465 PRO D 4 REMARK 465 SER D 5 REMARK 465 ILE D 6 REMARK 465 PRO D 7 REMARK 465 PHE D 8 REMARK 465 PRO D 9 REMARK 465 SER D 10 REMARK 465 PRO D 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 CG CD OE1 OE2 REMARK 470 ASN A 26 CG OD1 ND2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 ASN A 119 CG OD1 ND2 REMARK 470 SER A 144 OG REMARK 470 PHE A 159 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 165 CG CD OE1 NE2 REMARK 470 LYS B 28 CG CD CE NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 PHE B 91 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 ASN B 119 CG OD1 ND2 REMARK 470 SER B 144 OG REMARK 470 ASN C 26 CG OD1 ND2 REMARK 470 LYS C 28 CG CD CE NZ REMARK 470 LYS C 34 CG CD CE NZ REMARK 470 LYS C 45 CG CD CE NZ REMARK 470 LYS C 50 CG CD CE NZ REMARK 470 LYS C 77 CG CD CE NZ REMARK 470 ASP C 89 CG OD1 OD2 REMARK 470 GLU C 118 CG CD OE1 OE2 REMARK 470 ASN C 119 CG OD1 ND2 REMARK 470 SER C 144 OG REMARK 470 LYS C 155 CG CD CE NZ REMARK 470 PHE C 159 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN C 165 CG CD OE1 NE2 REMARK 470 GLU D 15 CG CD OE1 OE2 REMARK 470 ASN D 26 CG OD1 ND2 REMARK 470 LYS D 28 CG CD CE NZ REMARK 470 GLU D 29 CG CD OE1 OE2 REMARK 470 LYS D 34 CG CD CE NZ REMARK 470 LYS D 45 CG CD CE NZ REMARK 470 LYS D 50 CG CD CE NZ REMARK 470 LYS D 77 CG CD CE NZ REMARK 470 ASP D 89 CG OD1 OD2 REMARK 470 PHE D 91 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU D 118 CG CD OE1 OE2 REMARK 470 ASN D 119 CG OD1 ND2 REMARK 470 GLU D 132 CG CD OE1 OE2 REMARK 470 SER D 144 OG REMARK 470 GLU D 156 CG CD OE1 OE2 REMARK 470 GLN D 165 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 42 -143.70 -133.41 REMARK 500 GLN A 55 137.27 -170.51 REMARK 500 ASN A 76 -2.70 83.07 REMARK 500 ASN A 154 -162.03 -125.53 REMARK 500 ARG B 42 -133.90 -117.26 REMARK 500 ARG B 46 138.59 -175.85 REMARK 500 ASP B 51 93.47 91.28 REMARK 500 ASN B 154 -168.75 -115.12 REMARK 500 ARG C 42 -132.46 -141.34 REMARK 500 ASN C 76 10.06 83.09 REMARK 500 SER C 144 70.80 -102.27 REMARK 500 ASN C 154 -165.76 -123.27 REMARK 500 ARG D 42 -131.27 -125.09 REMARK 500 ARG D 46 134.07 -175.42 REMARK 500 ASP D 89 40.90 72.66 REMARK 500 ASN D 119 49.79 -78.74 REMARK 500 ASN D 154 -151.71 -114.81 REMARK 500 GLN D 164 75.72 -114.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG C 42 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 221 DISTANCE = 6.76 ANGSTROMS REMARK 525 HOH A 222 DISTANCE = 7.78 ANGSTROMS REMARK 525 HOH C 208 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH C 209 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH C 210 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH C 211 DISTANCE = 13.30 ANGSTROMS REMARK 525 HOH D 213 DISTANCE = 6.64 ANGSTROMS REMARK 525 HOH D 214 DISTANCE = 6.94 ANGSTROMS DBREF1 9LCW A 1 165 UNP A0A377HK12_GRIHO DBREF2 9LCW A A0A377HK12 25 189 DBREF1 9LCW B 1 165 UNP A0A377HK12_GRIHO DBREF2 9LCW B A0A377HK12 25 189 DBREF1 9LCW C 1 165 UNP A0A377HK12_GRIHO DBREF2 9LCW C A0A377HK12 25 189 DBREF1 9LCW D 1 165 UNP A0A377HK12_GRIHO DBREF2 9LCW D A0A377HK12 25 189 DBREF 9LCW E 1 11 PDB 9LCW 9LCW 1 11 DBREF 9LCW F 1 11 PDB 9LCW 9LCW 1 11 SEQADV 9LCW ALA A 88 UNP A0A377HK1 LYS 112 ENGINEERED MUTATION SEQADV 9LCW ALA B 88 UNP A0A377HK1 LYS 112 ENGINEERED MUTATION SEQADV 9LCW ALA C 88 UNP A0A377HK1 LYS 112 ENGINEERED MUTATION SEQADV 9LCW ALA D 88 UNP A0A377HK1 LYS 112 ENGINEERED MUTATION SEQRES 1 A 165 PHE GLU LEU PRO SER ILE PRO PHE PRO SER PRO GLY SER SEQRES 2 A 165 ASP GLU ILE LEU PHE VAL VAL ARG ASP THR THR PHE ASN SEQRES 3 A 165 THR LYS GLU PRO VAL ASN VAL LYS VAL SER ASP PHE TRP SEQRES 4 A 165 THR ASN ARG ASN VAL LYS ARG LYS PRO TYR LYS ASP VAL SEQRES 5 A 165 TYR GLY GLN SER VAL PHE THR THR SER GLY SER LYS TRP SEQRES 6 A 165 LEU THR SER TYR MET THR VAL SER ILE ASN ASN LYS ASP SEQRES 7 A 165 TYR THR MET ALA ALA VAL SER GLY TYR ALA ASP GLY PHE SEQRES 8 A 165 SER SER VAL PHE VAL LYS SER GLY GLN ILE GLN LEU GLN SEQRES 9 A 165 HIS TYR TYR ASN SER VAL ALA ASP PHE VAL GLY GLY ASP SEQRES 10 A 165 GLU ASN SER ILE PRO SER LYS THR TYR LEU ASP GLU THR SEQRES 11 A 165 PRO GLU TYR PHE VAL ASN VAL GLU ALA TYR GLU SER GLY SEQRES 12 A 165 SER GLY ASN ILE LEU VAL MET CYS ILE SER ASN LYS GLU SEQRES 13 A 165 SER TYR PHE GLU CYS GLU SER GLN GLN SEQRES 1 B 165 PHE GLU LEU PRO SER ILE PRO PHE PRO SER PRO GLY SER SEQRES 2 B 165 ASP GLU ILE LEU PHE VAL VAL ARG ASP THR THR PHE ASN SEQRES 3 B 165 THR LYS GLU PRO VAL ASN VAL LYS VAL SER ASP PHE TRP SEQRES 4 B 165 THR ASN ARG ASN VAL LYS ARG LYS PRO TYR LYS ASP VAL SEQRES 5 B 165 TYR GLY GLN SER VAL PHE THR THR SER GLY SER LYS TRP SEQRES 6 B 165 LEU THR SER TYR MET THR VAL SER ILE ASN ASN LYS ASP SEQRES 7 B 165 TYR THR MET ALA ALA VAL SER GLY TYR ALA ASP GLY PHE SEQRES 8 B 165 SER SER VAL PHE VAL LYS SER GLY GLN ILE GLN LEU GLN SEQRES 9 B 165 HIS TYR TYR ASN SER VAL ALA ASP PHE VAL GLY GLY ASP SEQRES 10 B 165 GLU ASN SER ILE PRO SER LYS THR TYR LEU ASP GLU THR SEQRES 11 B 165 PRO GLU TYR PHE VAL ASN VAL GLU ALA TYR GLU SER GLY SEQRES 12 B 165 SER GLY ASN ILE LEU VAL MET CYS ILE SER ASN LYS GLU SEQRES 13 B 165 SER TYR PHE GLU CYS GLU SER GLN GLN SEQRES 1 C 165 PHE GLU LEU PRO SER ILE PRO PHE PRO SER PRO GLY SER SEQRES 2 C 165 ASP GLU ILE LEU PHE VAL VAL ARG ASP THR THR PHE ASN SEQRES 3 C 165 THR LYS GLU PRO VAL ASN VAL LYS VAL SER ASP PHE TRP SEQRES 4 C 165 THR ASN ARG ASN VAL LYS ARG LYS PRO TYR LYS ASP VAL SEQRES 5 C 165 TYR GLY GLN SER VAL PHE THR THR SER GLY SER LYS TRP SEQRES 6 C 165 LEU THR SER TYR MET THR VAL SER ILE ASN ASN LYS ASP SEQRES 7 C 165 TYR THR MET ALA ALA VAL SER GLY TYR ALA ASP GLY PHE SEQRES 8 C 165 SER SER VAL PHE VAL LYS SER GLY GLN ILE GLN LEU GLN SEQRES 9 C 165 HIS TYR TYR ASN SER VAL ALA ASP PHE VAL GLY GLY ASP SEQRES 10 C 165 GLU ASN SER ILE PRO SER LYS THR TYR LEU ASP GLU THR SEQRES 11 C 165 PRO GLU TYR PHE VAL ASN VAL GLU ALA TYR GLU SER GLY SEQRES 12 C 165 SER GLY ASN ILE LEU VAL MET CYS ILE SER ASN LYS GLU SEQRES 13 C 165 SER TYR PHE GLU CYS GLU SER GLN GLN SEQRES 1 D 165 PHE GLU LEU PRO SER ILE PRO PHE PRO SER PRO GLY SER SEQRES 2 D 165 ASP GLU ILE LEU PHE VAL VAL ARG ASP THR THR PHE ASN SEQRES 3 D 165 THR LYS GLU PRO VAL ASN VAL LYS VAL SER ASP PHE TRP SEQRES 4 D 165 THR ASN ARG ASN VAL LYS ARG LYS PRO TYR LYS ASP VAL SEQRES 5 D 165 TYR GLY GLN SER VAL PHE THR THR SER GLY SER LYS TRP SEQRES 6 D 165 LEU THR SER TYR MET THR VAL SER ILE ASN ASN LYS ASP SEQRES 7 D 165 TYR THR MET ALA ALA VAL SER GLY TYR ALA ASP GLY PHE SEQRES 8 D 165 SER SER VAL PHE VAL LYS SER GLY GLN ILE GLN LEU GLN SEQRES 9 D 165 HIS TYR TYR ASN SER VAL ALA ASP PHE VAL GLY GLY ASP SEQRES 10 D 165 GLU ASN SER ILE PRO SER LYS THR TYR LEU ASP GLU THR SEQRES 11 D 165 PRO GLU TYR PHE VAL ASN VAL GLU ALA TYR GLU SER GLY SEQRES 12 D 165 SER GLY ASN ILE LEU VAL MET CYS ILE SER ASN LYS GLU SEQRES 13 D 165 SER TYR PHE GLU CYS GLU SER GLN GLN SEQRES 1 E 11 DC DT DC DT DA DT DA DG DA DG DA SEQRES 1 F 11 DC DT DC DT DA DT DA DG DA DG DA FORMUL 7 HOH *62(H2 O) HELIX 1 AA1 TYR A 106 GLY A 115 1 10 HELIX 2 AA2 SER A 157 GLU A 162 5 6 HELIX 3 AA3 TYR B 106 GLY B 115 1 10 HELIX 4 AA4 ASP B 117 ILE B 121 5 5 HELIX 5 AA5 SER B 157 CYS B 161 5 5 HELIX 6 AA6 TYR C 106 GLY C 115 1 10 HELIX 7 AA7 ASP C 117 ILE C 121 5 5 HELIX 8 AA8 ASN C 154 GLU C 156 5 3 HELIX 9 AA9 SER C 157 GLU C 162 1 6 HELIX 10 AB1 TYR D 106 GLY D 115 1 10 HELIX 11 AB2 ASP D 117 ILE D 121 5 5 HELIX 12 AB3 SER D 157 SER D 163 5 7 SHEET 1 AA1 6 ASN A 43 ARG A 46 0 SHEET 2 AA1 6 GLN A 55 SER A 63 -1 O THR A 59 N ARG A 46 SHEET 3 AA1 6 SER A 13 ASP A 22 -1 N PHE A 18 O PHE A 58 SHEET 4 AA1 6 ASN A 146 SER A 153 1 O MET A 150 N VAL A 19 SHEET 5 AA1 6 PHE A 134 GLU A 141 -1 N PHE A 134 O SER A 153 SHEET 6 AA1 6 SER A 123 GLU A 129 -1 N THR A 125 O VAL A 137 SHEET 1 AA2 4 VAL A 33 THR A 40 0 SHEET 2 AA2 4 LEU A 66 ILE A 74 -1 O SER A 73 N LYS A 34 SHEET 3 AA2 4 LYS A 77 ALA A 88 -1 O TYR A 79 N VAL A 72 SHEET 4 AA2 4 PHE A 91 GLY A 99 -1 O GLY A 99 N THR A 80 SHEET 1 AA3 6 ASN B 43 ARG B 46 0 SHEET 2 AA3 6 GLN B 55 SER B 63 -1 O SER B 61 N ASN B 43 SHEET 3 AA3 6 SER B 13 ASP B 22 -1 N PHE B 18 O PHE B 58 SHEET 4 AA3 6 ASN B 146 SER B 153 1 O MET B 150 N VAL B 19 SHEET 5 AA3 6 PHE B 134 GLU B 141 -1 N GLU B 138 O VAL B 149 SHEET 6 AA3 6 SER B 123 GLU B 129 -1 N LEU B 127 O VAL B 135 SHEET 1 AA4 4 VAL B 33 THR B 40 0 SHEET 2 AA4 4 LEU B 66 ILE B 74 -1 O SER B 73 N LYS B 34 SHEET 3 AA4 4 LYS B 77 ALA B 88 -1 O LYS B 77 N ILE B 74 SHEET 4 AA4 4 PHE B 91 GLY B 99 -1 O GLY B 99 N THR B 80 SHEET 1 AA5 6 ASN C 43 ARG C 46 0 SHEET 2 AA5 6 GLN C 55 GLY C 62 -1 O THR C 59 N LYS C 45 SHEET 3 AA5 6 ASP C 14 ASP C 22 -1 N ILE C 16 O THR C 60 SHEET 4 AA5 6 ASN C 146 SER C 153 1 O MET C 150 N VAL C 19 SHEET 5 AA5 6 PHE C 134 GLU C 141 -1 N PHE C 134 O SER C 153 SHEET 6 AA5 6 SER C 123 GLU C 129 -1 N THR C 125 O VAL C 137 SHEET 1 AA6 4 VAL C 33 THR C 40 0 SHEET 2 AA6 4 LEU C 66 ILE C 74 -1 O SER C 73 N LYS C 34 SHEET 3 AA6 4 LYS C 77 TYR C 87 -1 O TYR C 79 N VAL C 72 SHEET 4 AA6 4 SER C 92 GLY C 99 -1 O PHE C 95 N VAL C 84 SHEET 1 AA7 6 ASN D 43 ARG D 46 0 SHEET 2 AA7 6 GLN D 55 SER D 63 -1 O THR D 59 N LYS D 45 SHEET 3 AA7 6 SER D 13 ASP D 22 -1 N PHE D 18 O PHE D 58 SHEET 4 AA7 6 GLY D 145 SER D 153 1 O MET D 150 N VAL D 19 SHEET 5 AA7 6 PHE D 134 SER D 142 -1 N PHE D 134 O SER D 153 SHEET 6 AA7 6 SER D 123 GLU D 129 -1 N THR D 125 O VAL D 137 SHEET 1 AA8 4 VAL D 33 THR D 40 0 SHEET 2 AA8 4 LEU D 66 ILE D 74 -1 O SER D 73 N LYS D 34 SHEET 3 AA8 4 ASP D 78 ALA D 88 -1 O TYR D 79 N VAL D 72 SHEET 4 AA8 4 PHE D 91 GLY D 99 -1 O PHE D 91 N ALA D 88 SSBOND 1 CYS A 151 CYS A 161 1555 1555 2.33 SSBOND 2 CYS B 151 CYS B 161 1555 1555 2.44 SSBOND 3 CYS C 151 CYS C 161 1555 1555 2.36 SSBOND 4 CYS D 151 CYS D 161 1555 1555 2.49 CISPEP 1 LYS A 64 TRP A 65 0 -2.52 CISPEP 2 ILE A 121 PRO A 122 0 -10.88 CISPEP 3 LYS B 64 TRP B 65 0 -0.21 CISPEP 4 ILE B 121 PRO B 122 0 -8.06 CISPEP 5 LYS C 64 TRP C 65 0 3.83 CISPEP 6 ILE C 121 PRO C 122 0 -4.04 CISPEP 7 LYS D 64 TRP D 65 0 0.19 CISPEP 8 ILE D 121 PRO D 122 0 -5.46 CRYST1 81.603 61.656 113.283 90.00 106.06 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012254 0.000000 0.003528 0.00000 SCALE2 0.000000 0.016219 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009186 0.00000 CONECT 1075 1153 CONECT 1153 1075 CONECT 2256 2340 CONECT 2340 2256 CONECT 3447 3521 CONECT 3521 3447 CONECT 4606 4686 CONECT 4686 4606 MASTER 418 0 0 12 40 0 0 6 5221 6 8 54 END