HEADER OXIDOREDUCTASE(CHOH(D)-NAD+(A)) 26-NOV-91 9LDB TITLE DESIGN AND SYNTHESIS OF NEW ENZYMES BASED ON THE LACTATE DEHYDROGENASE TITLE 2 FRAMEWORK COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACTATE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823 KEYWDS OXIDOREDUCTASE(CHOH(D)-NAD+(A)) EXPDTA X-RAY DIFFRACTION AUTHOR C.R.DUNN,J.J.HOLBROOK,H.MUIRHEAD REVDAT 7 16-OCT-24 9LDB 1 REMARK REVDAT 6 27-SEP-23 9LDB 1 REMARK LINK SCALE MTRIX REVDAT 6 2 1 ATOM REVDAT 5 29-NOV-17 9LDB 1 HELIX REVDAT 4 13-JUL-11 9LDB 1 VERSN REVDAT 3 24-FEB-09 9LDB 1 VERSN REVDAT 2 01-APR-03 9LDB 1 JRNL REVDAT 1 31-OCT-93 9LDB 0 JRNL AUTH C.R.DUNN,H.M.WILKS,D.J.HALSALL,T.ATKINSON,A.R.CLARKE, JRNL AUTH 2 H.MUIRHEAD,J.J.HOLBROOK JRNL TITL DESIGN AND SYNTHESIS OF NEW ENZYMES BASED ON THE LACTATE JRNL TITL 2 DEHYDROGENASE FRAMEWORK. JRNL REF PHILOS.TRANS.R.SOC.LONDON, V. 332 177 1991 JRNL REF 2 SER.B JRNL REFN ISSN 0080-4622 JRNL PMID 1678537 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28869 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5136 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.020 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.060 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.063 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.022 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.154 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.195 ; 0.500 REMARK 3 MULTIPLE TORSION (A) : 0.283 ; 0.500 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.226 ; 0.500 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.100 ; 3.000 REMARK 3 STAGGERED (DEGREES) : 24.300; 15.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.468 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.865 ; 1.500 REMARK 3 SIDE-CHAIN BOND (A**2) : 0.584 ; 1.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 0.911 ; 1.500 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000180065. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 30.15000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.19500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.15000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.19500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TWO LDH SUBUNITS ARE INCLUDED. REMARK 300 THE A-SUBUNIT HAS NADH AND SULPHATE IN THE ACTIVE SITE. REMARK 300 THE B-SUBUNIT HAS NADH AND OXAMATE IN THE ACTIVE SITE. REMARK 300 BOTH SUBUNITS HAVE SULPHATE BOUND AT A REMOTE SITE. REMARK 300 REMARK 300 THE TRANSFORMATION PRESENTED ON *MTRIX* RECORDS BELOW WILL REMARK 300 YIELD APPROXIMATE COORDINATES FOR CHAIN *B* WHEN APPLIED TO REMARK 300 CHAIN *A*. REMARK 300 THE *SCALE* TRANSFORMATION BELOW GENERATES FRACTIONAL REMARK 300 COORDINATES WITH RESPECT TO SPACE GROUP P 21 21 2. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 29110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -282.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 217 N ASP B 219 1.93 REMARK 500 OG SER B 108 O HOH B 428 2.00 REMARK 500 O SER A 198 OG SER A 318 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 483 O HOH B 473 4455 1.28 REMARK 500 OD1 ASN B 132B OD1 ASN B 132B 2655 1.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 74 CZ ARG A 74 NH2 0.093 REMARK 500 GLU A 238 CD GLU A 238 OE2 0.088 REMARK 500 GLU B 14 CB GLU B 14 CG 0.143 REMARK 500 GLU B 238 CD GLU B 238 OE2 0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 13 CA - CB - CG ANGL. DEV. = 15.7 DEGREES REMARK 500 LYS A 13 CA - C - O ANGL. DEV. = 13.2 DEGREES REMARK 500 GLU A 14 CG - CD - OE2 ANGL. DEV. = -13.5 DEGREES REMARK 500 HIS A 16 O - C - N ANGL. DEV. = 10.2 DEGREES REMARK 500 ILE A 38 CA - CB - CG2 ANGL. DEV. = 13.1 DEGREES REMARK 500 MET A 42 CG - SD - CE ANGL. DEV. = -15.3 DEGREES REMARK 500 ASP A 53 CB - CG - OD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 MET A 55 CG - SD - CE ANGL. DEV. = -15.4 DEGREES REMARK 500 ASP A 65 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 SER A 70 CA - CB - OG ANGL. DEV. = -18.0 DEGREES REMARK 500 ARG A 74 NH1 - CZ - NH2 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 74 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 LYS A 77 N - CA - CB ANGL. DEV. = 14.3 DEGREES REMARK 500 LYS A 77 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 LYS A 77 O - C - N ANGL. DEV. = 10.1 DEGREES REMARK 500 ASP A 84 CB - CG - OD1 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 84 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TYR A 85 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ASN A 86 CB - CG - OD1 ANGL. DEV. = -13.6 DEGREES REMARK 500 VAL A 87 CA - CB - CG2 ANGL. DEV. = 11.1 DEGREES REMARK 500 ARG A 92 CD - NE - CZ ANGL. DEV. = -10.1 DEGREES REMARK 500 ARG A 92 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 101 CD - NE - CZ ANGL. DEV. = 8.8 DEGREES REMARK 500 ARG A 101 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 GLU A 105 CB - CG - CD ANGL. DEV. = 24.3 DEGREES REMARK 500 SER A 108 CB - CA - C ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG A 109 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 LEU A 110 CB - CA - C ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 115 NH1 - CZ - NH2 ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 115 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 115 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 LYS A 121 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ILE A 127 CA - CB - CG2 ANGL. DEV. = 12.8 DEGREES REMARK 500 LYS A 134 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 TYR A 147 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 TYR A 147 CB - CG - CD1 ANGL. DEV. = 3.8 DEGREES REMARK 500 LYS A 157 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ARG A 159 NE - CZ - NH1 ANGL. DEV. = 18.4 DEGREES REMARK 500 ARG A 159 NE - CZ - NH2 ANGL. DEV. = -12.3 DEGREES REMARK 500 ARG A 171 CD - NE - CZ ANGL. DEV. = -9.7 DEGREES REMARK 500 ARG A 171 NE - CZ - NH1 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG A 171 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 173 NH1 - CZ - NH2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 TYR A 174 CB - CG - CD1 ANGL. DEV. = -5.8 DEGREES REMARK 500 MET A 176 CG - SD - CE ANGL. DEV. = -11.5 DEGREES REMARK 500 GLU A 178 CB - CG - CD ANGL. DEV. = 19.9 DEGREES REMARK 500 ARG A 179 CD - NE - CZ ANGL. DEV. = 11.0 DEGREES REMARK 500 ARG A 179 NE - CZ - NH1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 193 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 14 67.70 -23.29 REMARK 500 GLU A 15 -166.08 -65.90 REMARK 500 HIS A 16 -73.99 -145.24 REMARK 500 VAL A 18 115.65 -23.17 REMARK 500 VAL A 29 51.91 -111.51 REMARK 500 THR A 218 78.12 -37.41 REMARK 500 ASP A 219 -120.17 -158.14 REMARK 500 ALA A 220 -55.96 -149.78 REMARK 500 LYS A 222 -149.62 154.95 REMARK 500 HIS A 224 67.58 38.96 REMARK 500 SER A 247 -39.66 -156.04 REMARK 500 LEU A 278 -70.47 -119.25 REMARK 500 TYR A 279 44.28 -92.63 REMARK 500 ASN A 284 46.47 -83.16 REMARK 500 LYS A 317 -70.97 -67.09 REMARK 500 LEU A 329 -110.40 -78.14 REMARK 500 GLN A 330 -2.36 74.10 REMARK 500 LYS B 13 -88.90 -98.79 REMARK 500 GLU B 14 143.53 49.01 REMARK 500 GLU B 15 101.41 -50.81 REMARK 500 VAL B 29 33.50 -98.25 REMARK 500 TYR B 85 -21.62 90.67 REMARK 500 THR B 218 33.41 -48.93 REMARK 500 LYS B 222 -30.62 32.16 REMARK 500 HIS B 224 71.85 43.62 REMARK 500 SER B 247 -50.30 -152.99 REMARK 500 ASN B 284 57.70 -69.60 REMARK 500 GLU B 328 -13.84 -162.05 REMARK 500 LEU B 329 61.47 -6.59 REMARK 500 GLN B 330 42.71 -85.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 237 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 265 10.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 AFTER ROTATION OF THE A AND B SUBUNITS ABOUT THE REMARK 700 CRYSTALLOGRAPHIC X AXIS, THE GENERATED C AND D SUBUNITS REMARK 700 FORM EXTENSIONS TO SHEET 3 IN THE SHEET RECORDS BELOW. REMARK 700 THE SYMMETRY-GENERATED SHEET RECORDS ARE PRESENTED AS A REMARK 700 REMARK BECAUSE PDB SPECIFICATIONS DO NOT ALLOW THE REMARK 700 INCLUSION OF STRANDS WHOSE COORDINATES ARE NOT PRESENTED IN REMARK 700 THE ENTRY: REMARK 700 EXTENSION TO SHEET 3 OF A SUBUNIT REMARK 700 3A 4 HIS D 9 LEU D 11 -1 N HIS D 9 O VAL A 302 REMARK 700 EXTENSION TO SHEET 3 OF B SUBUNIT REMARK 700 3B 4 HIS C 9 LEU C 11 -1 N HIS C 9 O VAL B 302 REMARK 700 STRAND 2 OF SHEETS 2A AND 2B IS BIFURCATED. EACH OF THESE REMARK 700 IS REPRESENTED BY TWO SHEETS, 2AA AND 2BA AND 2AB AND 2BB REMARK 700 BELOW, WHERE THE FIRST STRAND OF 2AA IS IDENTICAL TO THE REMARK 700 FIRST STRAND OF 2BA AND THE FIRST STRAND OF 2AB IS REMARK 700 IDENTICAL TO THE FIRST STRAND OF 2BB. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXM B 402 REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES ARE NUMBERED ACCORDING TO THE STANDARD LDH REMARK 999 NUMBERING SYSTEM DESCRIBED BY S.S.TAYLOR ET AL., IN REMARK 999 PROC.NAT.ACAD.SCI.USA V.70 1790 1973. DBREF 9LDB A 1 331 UNP P00339 LDHA_PIG 1 331 DBREF 9LDB B 1 331 UNP P00339 LDHA_PIG 1 331 SEQRES 1 A 332 ACE ALA THR LEU LYS ASP GLN LEU ILE HIS ASN LEU LEU SEQRES 2 A 332 LYS GLU GLU HIS VAL PRO HIS ASN LYS ILE THR VAL VAL SEQRES 3 A 332 GLY VAL GLY ALA VAL GLY MET ALA CYS ALA ILE SER ILE SEQRES 4 A 332 LEU MET LYS GLU LEU ALA ASP GLU ILE ALA LEU VAL ASP SEQRES 5 A 332 VAL MET GLU ASP LYS LEU LYS GLY GLU MET MET ASP LEU SEQRES 6 A 332 GLN HIS GLY SER LEU PHE LEU ARG THR PRO LYS ILE VAL SEQRES 7 A 332 SER GLY LYS ASP TYR ASN VAL THR ALA ASN SER ARG LEU SEQRES 8 A 332 VAL VAL ILE THR ALA GLY ALA ARG GLN GLN GLU GLY GLU SEQRES 9 A 332 SER ARG LEU ASN LEU VAL GLN ARG ASN VAL ASN ILE PHE SEQRES 10 A 332 LYS PHE ILE ILE PRO ASN ILE VAL LYS TYR SER PRO ASN SEQRES 11 A 332 CYS LYS LEU LEU VAL VAL SER ASN PRO VAL ASP ILE LEU SEQRES 12 A 332 THR TYR VAL ALA TRP LYS ILE SER GLY PHE PRO LYS ASN SEQRES 13 A 332 ARG VAL ILE GLY SER GLY CYS ASN LEU ASP SER ALA ARG SEQRES 14 A 332 PHE ARG TYR LEU MET GLY GLU ARG LEU GLY VAL HIS PRO SEQRES 15 A 332 LEU SER CYS HIS GLY TRP ILE LEU GLY GLU HIS GLY ASP SEQRES 16 A 332 SER SER VAL PRO VAL TRP SER GLY VAL ASN VAL ALA GLY SEQRES 17 A 332 VAL SER LEU LYS ASN LEU HIS PRO GLU LEU GLY THR ASP SEQRES 18 A 332 ALA ASP LYS GLU HIS TRP LYS ALA VAL HIS LYS GLU VAL SEQRES 19 A 332 VAL ASP SER ALA TYR GLU VAL ILE LYS LEU LYS GLY TYR SEQRES 20 A 332 THR SER TRP ALA ILE GLY LEU SER VAL ALA ASP LEU ALA SEQRES 21 A 332 GLU SER ILE MET LYS ASN LEU ARG ARG VAL HIS PRO ILE SEQRES 22 A 332 SER THR MET ILE LYS GLY LEU TYR GLY ILE LYS GLU ASN SEQRES 23 A 332 VAL PHE LEU SER VAL PRO CYS ILE LEU GLY GLN ASN GLY SEQRES 24 A 332 ILE SER ASP VAL VAL LYS VAL THR LEU THR PRO GLU GLU SEQRES 25 A 332 GLU ALA HIS LEU LYS LYS SER ALA ASP THR LEU TRP GLY SEQRES 26 A 332 ILE GLN LYS GLU LEU GLN PHE SEQRES 1 B 332 ACE ALA THR LEU LYS ASP GLN LEU ILE HIS ASN LEU LEU SEQRES 2 B 332 LYS GLU GLU HIS VAL PRO HIS ASN LYS ILE THR VAL VAL SEQRES 3 B 332 GLY VAL GLY ALA VAL GLY MET ALA CYS ALA ILE SER ILE SEQRES 4 B 332 LEU MET LYS GLU LEU ALA ASP GLU ILE ALA LEU VAL ASP SEQRES 5 B 332 VAL MET GLU ASP LYS LEU LYS GLY GLU MET MET ASP LEU SEQRES 6 B 332 GLN HIS GLY SER LEU PHE LEU ARG THR PRO LYS ILE VAL SEQRES 7 B 332 SER GLY LYS ASP TYR ASN VAL THR ALA ASN SER ARG LEU SEQRES 8 B 332 VAL VAL ILE THR ALA GLY ALA ARG GLN GLN GLU GLY GLU SEQRES 9 B 332 SER ARG LEU ASN LEU VAL GLN ARG ASN VAL ASN ILE PHE SEQRES 10 B 332 LYS PHE ILE ILE PRO ASN ILE VAL LYS TYR SER PRO ASN SEQRES 11 B 332 CYS LYS LEU LEU VAL VAL SER ASN PRO VAL ASP ILE LEU SEQRES 12 B 332 THR TYR VAL ALA TRP LYS ILE SER GLY PHE PRO LYS ASN SEQRES 13 B 332 ARG VAL ILE GLY SER GLY CYS ASN LEU ASP SER ALA ARG SEQRES 14 B 332 PHE ARG TYR LEU MET GLY GLU ARG LEU GLY VAL HIS PRO SEQRES 15 B 332 LEU SER CYS HIS GLY TRP ILE LEU GLY GLU HIS GLY ASP SEQRES 16 B 332 SER SER VAL PRO VAL TRP SER GLY VAL ASN VAL ALA GLY SEQRES 17 B 332 VAL SER LEU LYS ASN LEU HIS PRO GLU LEU GLY THR ASP SEQRES 18 B 332 ALA ASP LYS GLU HIS TRP LYS ALA VAL HIS LYS GLU VAL SEQRES 19 B 332 VAL ASP SER ALA TYR GLU VAL ILE LYS LEU LYS GLY TYR SEQRES 20 B 332 THR SER TRP ALA ILE GLY LEU SER VAL ALA ASP LEU ALA SEQRES 21 B 332 GLU SER ILE MET LYS ASN LEU ARG ARG VAL HIS PRO ILE SEQRES 22 B 332 SER THR MET ILE LYS GLY LEU TYR GLY ILE LYS GLU ASN SEQRES 23 B 332 VAL PHE LEU SER VAL PRO CYS ILE LEU GLY GLN ASN GLY SEQRES 24 B 332 ILE SER ASP VAL VAL LYS VAL THR LEU THR PRO GLU GLU SEQRES 25 B 332 GLU ALA HIS LEU LYS LYS SER ALA ASP THR LEU TRP GLY SEQRES 26 B 332 ILE GLN LYS GLU LEU GLN PHE HET ACE A 0 3 HET ACE B 0 3 HET SO4 A 402 5 HET SO4 A 403 5 HET NAD A 401 44 HET SO4 B 403 5 HET NAD B 401 44 HET OXM B 402 6 HETNAM ACE ACETYL GROUP HETNAM SO4 SULFATE ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM OXM OXAMIC ACID FORMUL 1 ACE 2(C2 H4 O) FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 NAD 2(C21 H27 N7 O14 P2) FORMUL 8 OXM C2 H3 N O3 FORMUL 9 HOH *151(H2 O) HELIX 1 AA LEU A 3 LEU A 7 1 5 HELIX 2 BA ALA A 31 MET A 42 1 12 HELIX 3 CA GLU A 56 HIS A 68 1 13 HELIX 4 DA VAL A 113 PHE A 122 1 10 HELIX 5 EA ILE A 123 TYR A 130 1 8 HELIX 6 1FA VAL A 142 SER A 153 1 12 HELIX 7 2FA ASN A 166 LEU A 180 1 15 HELIX 8 1GA LYS A 226 SER A 235 1 10 HELIX 9 2GA ALA A 236 LYS A 243 1 8 HELIX 10 3GA TRP A 248 MET A 262 1 15 HELIX 11 HB GLU A 311 LEU A 329 1 19 HELIX 12 AB LEU B 3 LEU B 7 1 5 HELIX 13 BB ALA B 31 LYS B 43 1 13 HELIX 14 CB GLU B 56 GLN B 67 1 12 HELIX 15 DB VAL B 113 PHE B 122 1 10 HELIX 16 EB ILE B 123 TYR B 130 1 8 HELIX 17 1FB VAL B 142 SER B 153 1 12 HELIX 18 2FB ASN B 166 LEU B 180 1 15 HELIX 19 1GB LYS B 226 SER B 235 1 10 HELIX 20 2GB ALA B 236 LYS B 243 1 8 HELIX 21 3GB TRP B 248 MET B 262 1 15 HELIX 22 HB PRO B 309 GLN B 326 1 18 SHEET 1 1A 6 LYS A 77 SER A 80 0 SHEET 2 1A 6 GLU A 48 VAL A 52 1 N ILE A 49 O LYS A 77 SHEET 3 1A 6 LYS A 23 GLY A 28 1 N ILE A 24 O GLU A 48 SHEET 4 1A 6 ARG A 92 THR A 97 1 N ARG A 92 N LYS A 23 SHEET 5 1A 6 CYS A 133 VAL A 137 1 N LEU A 136 O VAL A 94 SHEET 6 1A 6 VAL A 160 GLY A 162 1 N ILE A 161 O LEU A 135 SHEET 1 2AA 3 CYS A 187 LEU A 192 0 SHEET 2 2AA 3 VAL A 206 VAL A 208 -1 N ASN A 207 O HIS A 188 SHEET 3 2AA 3 VAL A 209C LEU A 210A-1 N LEU A 210A O VAL A 206 SHEET 1 2BA 2 CYS A 187 LEU A 192 0 SHEET 2 2BA 2 VAL A 200 VAL A 202 -1 N VAL A 200 O LEU A 192 SHEET 1 3A 3 ARG A 267 ILE A 275 0 SHEET 2 3A 3 VAL A 285 GLY A 294 -1 N LEU A 287 O THR A 273 SHEET 3 3A 3 GLY A 297 LYS A 304 -1 N GLY A 297 O GLY A 294 SHEET 1 1B 6 LYS B 77 SER B 80 0 SHEET 2 1B 6 GLU B 48 VAL B 52 1 N ILE B 49 O LYS B 77 SHEET 3 1B 6 LYS B 23 GLY B 28 1 N ILE B 24 O GLU B 48 SHEET 4 1B 6 ARG B 92 THR B 97 1 N ARG B 92 N LYS B 23 SHEET 5 1B 6 CYS B 133 VAL B 137 1 N LEU B 136 O VAL B 94 SHEET 6 1B 6 VAL B 160 GLY B 162 1 N ILE B 161 O LEU B 135 SHEET 1 2AB 3 CYS B 187 LEU B 192 0 SHEET 2 2AB 3 VAL B 206 VAL B 208 -1 N ASN B 207 O HIS B 188 SHEET 3 2AB 3 VAL B 209C LEU B 210A-1 N LEU B 210A O VAL B 206 SHEET 1 2BB 2 CYS B 187 LEU B 192 0 SHEET 2 2BB 2 VAL B 200 VAL B 202 -1 N VAL B 200 O LEU B 192 SHEET 1 3B 3 ARG B 267 ILE B 275 0 SHEET 2 3B 3 VAL B 285 GLY B 294 -1 N LEU B 287 O THR B 273 SHEET 3 3B 3 GLY B 297 LYS B 304 -1 N GLY B 297 O GLY B 294 LINK C ACE A 0 N ALA A 1 1555 1555 1.36 LINK C ACE B 0 N ALA B 1 1555 1555 1.35 CISPEP 1 ASN A 140 PRO A 141 0 -3.00 CISPEP 2 ASN B 140 PRO B 141 0 -1.56 SITE 1 AC1 7 ARG A 109 ASN A 140 ARG A 171 HIS A 195 SITE 2 AC1 7 ALA A 236 THR A 246 NAD A 401 SITE 1 AC2 6 ARG A 173 HIS A 188 HOH A 430 HOH A 433 SITE 2 AC2 6 HOH A 446 HOH A 450 SITE 1 AC3 6 ARG B 173 HIS B 188 HOH B 442 HOH B 444 SITE 2 AC3 6 HOH B 462 HOH B 463 SITE 1 AC4 30 GLY A 30 ALA A 31 VAL A 32 ASP A 53 SITE 2 AC4 30 VAL A 54 MET A 55 THR A 97 ALA A 98 SITE 3 AC4 30 GLY A 99 ALA A 100 ARG A 101 PHE A 122 SITE 4 AC4 30 ILE A 123 VAL A 138 ASN A 140 SER A 163 SITE 5 AC4 30 LEU A 167 HIS A 195 THR A 246 ILE A 250 SITE 6 AC4 30 SO4 A 402 HOH A 404 HOH A 411 HOH A 413 SITE 7 AC4 30 HOH A 424 HOH A 429 HOH A 442 HOH A 464 SITE 8 AC4 30 HOH B 425 HOH B 473 SITE 1 AC5 24 GLY B 30 ALA B 31 VAL B 32 ASP B 53 SITE 2 AC5 24 VAL B 54 MET B 55 THR B 97 ALA B 98 SITE 3 AC5 24 GLY B 99 ALA B 100 ARG B 101 ILE B 119 SITE 4 AC5 24 VAL B 138 ASN B 140 SER B 163 HIS B 195 SITE 5 AC5 24 THR B 246 ILE B 250 OXM B 402 HOH B 407 SITE 6 AC5 24 HOH B 414 HOH B 416 HOH B 429 HOH B 441 SITE 1 AC6 8 GLN B 102 ARG B 109 ASN B 140 ARG B 171 SITE 2 AC6 8 HIS B 195 ALA B 236 THR B 246 NAD B 401 CRYST1 60.300 136.390 86.050 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 0.000000 0.000000 1.000000 -7.00000 ORIGX2 0.231726 0.972755 0.000000 0.00000 ORIGX3 -0.972729 0.232033 0.000000 0.00000 SCALE1 0.016584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011621 0.00000 MTRIX1 1 -0.892463 0.451425 0.000000 0.00000 1 MTRIX2 1 0.450814 0.892463 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 -1.000000 14.00000 1 HETATM 1 C ACE A 0 -19.278 9.727 -29.519 1.00 52.91 C HETATM 2 O ACE A 0 -19.178 8.548 -29.975 1.00 52.94 O HETATM 3 CH3 ACE A 0 -20.365 10.119 -28.544 1.00 52.91 C