data_9LIW # _entry.id 9LIW # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9LIW pdb_00009liw 10.2210/pdb9liw/pdb WWPDB D_1300055643 ? ? EMDB EMD-63125 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-01-21 ? 2 'EM metadata' 1 0 2026-01-21 ? 3 FSC 1 0 2026-01-21 ? 4 'Half map' 1 0 2026-01-21 1 5 'Half map' 1 0 2026-01-21 2 6 Image 1 0 2026-01-21 ? 7 'Primary map' 1 0 2026-01-21 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9LIW _pdbx_database_status.recvd_initial_deposition_date 2025-01-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'The cryo-EM structure of amyloid fibrils from heart of an AL amyloidosis patient (case 1) - polymorph 1.' _pdbx_database_related.db_id EMD-63125 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email yaoyuxuan@sjtu.edu.cn _pdbx_contact_author.name_first Dan _pdbx_contact_author.name_last Li _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3425-6672 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Yao, Y.X.' 1 ? 'Zhao, Q.Y.' 2 ? 'Liu, C.' 3 ? 'Li, D.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 123 _citation.language ? _citation.page_first e2515454123 _citation.page_last e2515454123 _citation.title 'Biopsy-resolved cryo-EM structures of amyloid fibrils provide molecular insights into AL amyloidosis.' _citation.year 2026 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2515454123 _citation.pdbx_database_id_PubMed 41493812 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yao, Y.' 1 ? primary 'Zhao, Q.' 2 ? primary 'Yao, S.' 3 0000-0002-4505-4761 primary 'Xu, Y.' 4 0000-0001-9969-613X primary 'Liu, K.' 5 0009-0000-2392-0895 primary 'Cao, T.' 6 0009-0008-7124-1924 primary 'Sun, B.' 7 0000-0002-4590-7795 primary 'Zhou, J.' 8 ? primary 'Liu, C.' 9 0000-0003-3425-6672 primary 'Li, D.' 10 0000-0002-1609-1539 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Monoclonal immunoglobulin light chains (LC)' _entity.formula_weight 11600.622 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;EPALTQPPSASGTPGQRVTISCSGSYSNIGTNTVNWYRQLPGTAPKVLIYSNNYRPSRVPDRFTGSKSGTSASLAISGLQ SEDEADYYCAAWDDSLDGPVFGGGTQLTVL ; _entity_poly.pdbx_seq_one_letter_code_can ;EPALTQPPSASGTPGQRVTISCSGSYSNIGTNTVNWYRQLPGTAPKVLIYSNNYRPSRVPDRFTGSKSGTSASLAISGLQ SEDEADYYCAAWDDSLDGPVFGGGTQLTVL ; _entity_poly.pdbx_strand_id AA,AB,AC _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 PRO n 1 3 ALA n 1 4 LEU n 1 5 THR n 1 6 GLN n 1 7 PRO n 1 8 PRO n 1 9 SER n 1 10 ALA n 1 11 SER n 1 12 GLY n 1 13 THR n 1 14 PRO n 1 15 GLY n 1 16 GLN n 1 17 ARG n 1 18 VAL n 1 19 THR n 1 20 ILE n 1 21 SER n 1 22 CYS n 1 23 SER n 1 24 GLY n 1 25 SER n 1 26 TYR n 1 27 SER n 1 28 ASN n 1 29 ILE n 1 30 GLY n 1 31 THR n 1 32 ASN n 1 33 THR n 1 34 VAL n 1 35 ASN n 1 36 TRP n 1 37 TYR n 1 38 ARG n 1 39 GLN n 1 40 LEU n 1 41 PRO n 1 42 GLY n 1 43 THR n 1 44 ALA n 1 45 PRO n 1 46 LYS n 1 47 VAL n 1 48 LEU n 1 49 ILE n 1 50 TYR n 1 51 SER n 1 52 ASN n 1 53 ASN n 1 54 TYR n 1 55 ARG n 1 56 PRO n 1 57 SER n 1 58 ARG n 1 59 VAL n 1 60 PRO n 1 61 ASP n 1 62 ARG n 1 63 PHE n 1 64 THR n 1 65 GLY n 1 66 SER n 1 67 LYS n 1 68 SER n 1 69 GLY n 1 70 THR n 1 71 SER n 1 72 ALA n 1 73 SER n 1 74 LEU n 1 75 ALA n 1 76 ILE n 1 77 SER n 1 78 GLY n 1 79 LEU n 1 80 GLN n 1 81 SER n 1 82 GLU n 1 83 ASP n 1 84 GLU n 1 85 ALA n 1 86 ASP n 1 87 TYR n 1 88 TYR n 1 89 CYS n 1 90 ALA n 1 91 ALA n 1 92 TRP n 1 93 ASP n 1 94 ASP n 1 95 SER n 1 96 LEU n 1 97 ASP n 1 98 GLY n 1 99 PRO n 1 100 VAL n 1 101 PHE n 1 102 GLY n 1 103 GLY n 1 104 GLY n 1 105 THR n 1 106 GLN n 1 107 LEU n 1 108 THR n 1 109 VAL n 1 110 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 110 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 ? ? ? AA . n A 1 2 PRO 2 2 ? ? ? AA . n A 1 3 ALA 3 3 ? ? ? AA . n A 1 4 LEU 4 4 ? ? ? AA . n A 1 5 THR 5 5 ? ? ? AA . n A 1 6 GLN 6 6 ? ? ? AA . n A 1 7 PRO 7 7 ? ? ? AA . n A 1 8 PRO 8 8 8 PRO PRO AA . n A 1 9 SER 9 9 9 SER SER AA . n A 1 10 ALA 10 10 10 ALA ALA AA . n A 1 11 SER 11 11 11 SER SER AA . n A 1 12 GLY 12 12 12 GLY GLY AA . n A 1 13 THR 13 13 13 THR THR AA . n A 1 14 PRO 14 14 14 PRO PRO AA . n A 1 15 GLY 15 15 15 GLY GLY AA . n A 1 16 GLN 16 16 16 GLN GLN AA . n A 1 17 ARG 17 17 17 ARG ARG AA . n A 1 18 VAL 18 18 18 VAL VAL AA . n A 1 19 THR 19 19 19 THR THR AA . n A 1 20 ILE 20 20 20 ILE ILE AA . n A 1 21 SER 21 21 21 SER SER AA . n A 1 22 CYS 22 22 22 CYS CYS AA . n A 1 23 SER 23 23 23 SER SER AA . n A 1 24 GLY 24 24 24 GLY GLY AA . n A 1 25 SER 25 25 25 SER SER AA . n A 1 26 TYR 26 26 26 TYR TYR AA . n A 1 27 SER 27 27 27 SER SER AA . n A 1 28 ASN 28 28 28 ASN ASN AA . n A 1 29 ILE 29 29 29 ILE ILE AA . n A 1 30 GLY 30 30 30 GLY GLY AA . n A 1 31 THR 31 31 31 THR THR AA . n A 1 32 ASN 32 32 32 ASN ASN AA . n A 1 33 THR 33 33 33 THR THR AA . n A 1 34 VAL 34 34 34 VAL VAL AA . n A 1 35 ASN 35 35 35 ASN ASN AA . n A 1 36 TRP 36 36 36 TRP TRP AA . n A 1 37 TYR 37 37 37 TYR TYR AA . n A 1 38 ARG 38 38 38 ARG ARG AA . n A 1 39 GLN 39 39 39 GLN GLN AA . n A 1 40 LEU 40 40 40 LEU LEU AA . n A 1 41 PRO 41 41 41 PRO PRO AA . n A 1 42 GLY 42 42 42 GLY GLY AA . n A 1 43 THR 43 43 43 THR THR AA . n A 1 44 ALA 44 44 44 ALA ALA AA . n A 1 45 PRO 45 45 45 PRO PRO AA . n A 1 46 LYS 46 46 46 LYS LYS AA . n A 1 47 VAL 47 47 47 VAL VAL AA . n A 1 48 LEU 48 48 48 LEU LEU AA . n A 1 49 ILE 49 49 49 ILE ILE AA . n A 1 50 TYR 50 50 50 TYR TYR AA . n A 1 51 SER 51 51 51 SER SER AA . n A 1 52 ASN 52 52 52 ASN ASN AA . n A 1 53 ASN 53 53 53 ASN ASN AA . n A 1 54 TYR 54 54 54 TYR TYR AA . n A 1 55 ARG 55 55 55 ARG ARG AA . n A 1 56 PRO 56 56 56 PRO PRO AA . n A 1 57 SER 57 57 57 SER SER AA . n A 1 58 ARG 58 58 58 ARG ARG AA . n A 1 59 VAL 59 59 59 VAL VAL AA . n A 1 60 PRO 60 60 60 PRO PRO AA . n A 1 61 ASP 61 61 61 ASP ASP AA . n A 1 62 ARG 62 62 62 ARG ARG AA . n A 1 63 PHE 63 63 63 PHE PHE AA . n A 1 64 THR 64 64 64 THR THR AA . n A 1 65 GLY 65 65 65 GLY GLY AA . n A 1 66 SER 66 66 66 SER SER AA . n A 1 67 LYS 67 67 67 LYS LYS AA . n A 1 68 SER 68 68 68 SER SER AA . n A 1 69 GLY 69 69 69 GLY GLY AA . n A 1 70 THR 70 70 70 THR THR AA . n A 1 71 SER 71 71 71 SER SER AA . n A 1 72 ALA 72 72 72 ALA ALA AA . n A 1 73 SER 73 73 73 SER SER AA . n A 1 74 LEU 74 74 74 LEU LEU AA . n A 1 75 ALA 75 75 75 ALA ALA AA . n A 1 76 ILE 76 76 76 ILE ILE AA . n A 1 77 SER 77 77 77 SER SER AA . n A 1 78 GLY 78 78 78 GLY GLY AA . n A 1 79 LEU 79 79 79 LEU LEU AA . n A 1 80 GLN 80 80 80 GLN GLN AA . n A 1 81 SER 81 81 81 SER SER AA . n A 1 82 GLU 82 82 82 GLU GLU AA . n A 1 83 ASP 83 83 83 ASP ASP AA . n A 1 84 GLU 84 84 84 GLU GLU AA . n A 1 85 ALA 85 85 85 ALA ALA AA . n A 1 86 ASP 86 86 86 ASP ASP AA . n A 1 87 TYR 87 87 87 TYR TYR AA . n A 1 88 TYR 88 88 88 TYR TYR AA . n A 1 89 CYS 89 89 89 CYS CYS AA . n A 1 90 ALA 90 90 90 ALA ALA AA . n A 1 91 ALA 91 91 91 ALA ALA AA . n A 1 92 TRP 92 92 92 TRP TRP AA . n A 1 93 ASP 93 93 93 ASP ASP AA . n A 1 94 ASP 94 94 94 ASP ASP AA . n A 1 95 SER 95 95 95 SER SER AA . n A 1 96 LEU 96 96 96 LEU LEU AA . n A 1 97 ASP 97 97 97 ASP ASP AA . n A 1 98 GLY 98 98 98 GLY GLY AA . n A 1 99 PRO 99 99 99 PRO PRO AA . n A 1 100 VAL 100 100 100 VAL VAL AA . n A 1 101 PHE 101 101 101 PHE PHE AA . n A 1 102 GLY 102 102 102 GLY GLY AA . n A 1 103 GLY 103 103 103 GLY GLY AA . n A 1 104 GLY 104 104 104 GLY GLY AA . n A 1 105 THR 105 105 105 THR THR AA . n A 1 106 GLN 106 106 106 GLN GLN AA . n A 1 107 LEU 107 107 107 LEU LEU AA . n A 1 108 THR 108 108 108 THR THR AA . n A 1 109 VAL 109 109 109 VAL VAL AA . n A 1 110 LEU 110 110 ? ? ? AA . n B 1 1 GLU 1 1 ? ? ? AB . n B 1 2 PRO 2 2 ? ? ? AB . n B 1 3 ALA 3 3 ? ? ? AB . n B 1 4 LEU 4 4 ? ? ? AB . n B 1 5 THR 5 5 ? ? ? AB . n B 1 6 GLN 6 6 ? ? ? AB . n B 1 7 PRO 7 7 ? ? ? AB . n B 1 8 PRO 8 8 8 PRO PRO AB . n B 1 9 SER 9 9 9 SER SER AB . n B 1 10 ALA 10 10 10 ALA ALA AB . n B 1 11 SER 11 11 11 SER SER AB . n B 1 12 GLY 12 12 12 GLY GLY AB . n B 1 13 THR 13 13 13 THR THR AB . n B 1 14 PRO 14 14 14 PRO PRO AB . n B 1 15 GLY 15 15 15 GLY GLY AB . n B 1 16 GLN 16 16 16 GLN GLN AB . n B 1 17 ARG 17 17 17 ARG ARG AB . n B 1 18 VAL 18 18 18 VAL VAL AB . n B 1 19 THR 19 19 19 THR THR AB . n B 1 20 ILE 20 20 20 ILE ILE AB . n B 1 21 SER 21 21 21 SER SER AB . n B 1 22 CYS 22 22 22 CYS CYS AB . n B 1 23 SER 23 23 23 SER SER AB . n B 1 24 GLY 24 24 24 GLY GLY AB . n B 1 25 SER 25 25 25 SER SER AB . n B 1 26 TYR 26 26 26 TYR TYR AB . n B 1 27 SER 27 27 27 SER SER AB . n B 1 28 ASN 28 28 28 ASN ASN AB . n B 1 29 ILE 29 29 29 ILE ILE AB . n B 1 30 GLY 30 30 30 GLY GLY AB . n B 1 31 THR 31 31 31 THR THR AB . n B 1 32 ASN 32 32 32 ASN ASN AB . n B 1 33 THR 33 33 33 THR THR AB . n B 1 34 VAL 34 34 34 VAL VAL AB . n B 1 35 ASN 35 35 35 ASN ASN AB . n B 1 36 TRP 36 36 36 TRP TRP AB . n B 1 37 TYR 37 37 37 TYR TYR AB . n B 1 38 ARG 38 38 38 ARG ARG AB . n B 1 39 GLN 39 39 39 GLN GLN AB . n B 1 40 LEU 40 40 40 LEU LEU AB . n B 1 41 PRO 41 41 41 PRO PRO AB . n B 1 42 GLY 42 42 42 GLY GLY AB . n B 1 43 THR 43 43 43 THR THR AB . n B 1 44 ALA 44 44 44 ALA ALA AB . n B 1 45 PRO 45 45 45 PRO PRO AB . n B 1 46 LYS 46 46 46 LYS LYS AB . n B 1 47 VAL 47 47 47 VAL VAL AB . n B 1 48 LEU 48 48 48 LEU LEU AB . n B 1 49 ILE 49 49 49 ILE ILE AB . n B 1 50 TYR 50 50 50 TYR TYR AB . n B 1 51 SER 51 51 51 SER SER AB . n B 1 52 ASN 52 52 52 ASN ASN AB . n B 1 53 ASN 53 53 53 ASN ASN AB . n B 1 54 TYR 54 54 54 TYR TYR AB . n B 1 55 ARG 55 55 55 ARG ARG AB . n B 1 56 PRO 56 56 56 PRO PRO AB . n B 1 57 SER 57 57 57 SER SER AB . n B 1 58 ARG 58 58 58 ARG ARG AB . n B 1 59 VAL 59 59 59 VAL VAL AB . n B 1 60 PRO 60 60 60 PRO PRO AB . n B 1 61 ASP 61 61 61 ASP ASP AB . n B 1 62 ARG 62 62 62 ARG ARG AB . n B 1 63 PHE 63 63 63 PHE PHE AB . n B 1 64 THR 64 64 64 THR THR AB . n B 1 65 GLY 65 65 65 GLY GLY AB . n B 1 66 SER 66 66 66 SER SER AB . n B 1 67 LYS 67 67 67 LYS LYS AB . n B 1 68 SER 68 68 68 SER SER AB . n B 1 69 GLY 69 69 69 GLY GLY AB . n B 1 70 THR 70 70 70 THR THR AB . n B 1 71 SER 71 71 71 SER SER AB . n B 1 72 ALA 72 72 72 ALA ALA AB . n B 1 73 SER 73 73 73 SER SER AB . n B 1 74 LEU 74 74 74 LEU LEU AB . n B 1 75 ALA 75 75 75 ALA ALA AB . n B 1 76 ILE 76 76 76 ILE ILE AB . n B 1 77 SER 77 77 77 SER SER AB . n B 1 78 GLY 78 78 78 GLY GLY AB . n B 1 79 LEU 79 79 79 LEU LEU AB . n B 1 80 GLN 80 80 80 GLN GLN AB . n B 1 81 SER 81 81 81 SER SER AB . n B 1 82 GLU 82 82 82 GLU GLU AB . n B 1 83 ASP 83 83 83 ASP ASP AB . n B 1 84 GLU 84 84 84 GLU GLU AB . n B 1 85 ALA 85 85 85 ALA ALA AB . n B 1 86 ASP 86 86 86 ASP ASP AB . n B 1 87 TYR 87 87 87 TYR TYR AB . n B 1 88 TYR 88 88 88 TYR TYR AB . n B 1 89 CYS 89 89 89 CYS CYS AB . n B 1 90 ALA 90 90 90 ALA ALA AB . n B 1 91 ALA 91 91 91 ALA ALA AB . n B 1 92 TRP 92 92 92 TRP TRP AB . n B 1 93 ASP 93 93 93 ASP ASP AB . n B 1 94 ASP 94 94 94 ASP ASP AB . n B 1 95 SER 95 95 95 SER SER AB . n B 1 96 LEU 96 96 96 LEU LEU AB . n B 1 97 ASP 97 97 97 ASP ASP AB . n B 1 98 GLY 98 98 98 GLY GLY AB . n B 1 99 PRO 99 99 99 PRO PRO AB . n B 1 100 VAL 100 100 100 VAL VAL AB . n B 1 101 PHE 101 101 101 PHE PHE AB . n B 1 102 GLY 102 102 102 GLY GLY AB . n B 1 103 GLY 103 103 103 GLY GLY AB . n B 1 104 GLY 104 104 104 GLY GLY AB . n B 1 105 THR 105 105 105 THR THR AB . n B 1 106 GLN 106 106 106 GLN GLN AB . n B 1 107 LEU 107 107 107 LEU LEU AB . n B 1 108 THR 108 108 108 THR THR AB . n B 1 109 VAL 109 109 109 VAL VAL AB . n B 1 110 LEU 110 110 ? ? ? AB . n C 1 1 GLU 1 1 ? ? ? AC . n C 1 2 PRO 2 2 ? ? ? AC . n C 1 3 ALA 3 3 ? ? ? AC . n C 1 4 LEU 4 4 ? ? ? AC . n C 1 5 THR 5 5 ? ? ? AC . n C 1 6 GLN 6 6 ? ? ? AC . n C 1 7 PRO 7 7 ? ? ? AC . n C 1 8 PRO 8 8 8 PRO PRO AC . n C 1 9 SER 9 9 9 SER SER AC . n C 1 10 ALA 10 10 10 ALA ALA AC . n C 1 11 SER 11 11 11 SER SER AC . n C 1 12 GLY 12 12 12 GLY GLY AC . n C 1 13 THR 13 13 13 THR THR AC . n C 1 14 PRO 14 14 14 PRO PRO AC . n C 1 15 GLY 15 15 15 GLY GLY AC . n C 1 16 GLN 16 16 16 GLN GLN AC . n C 1 17 ARG 17 17 17 ARG ARG AC . n C 1 18 VAL 18 18 18 VAL VAL AC . n C 1 19 THR 19 19 19 THR THR AC . n C 1 20 ILE 20 20 20 ILE ILE AC . n C 1 21 SER 21 21 21 SER SER AC . n C 1 22 CYS 22 22 22 CYS CYS AC . n C 1 23 SER 23 23 23 SER SER AC . n C 1 24 GLY 24 24 24 GLY GLY AC . n C 1 25 SER 25 25 25 SER SER AC . n C 1 26 TYR 26 26 26 TYR TYR AC . n C 1 27 SER 27 27 27 SER SER AC . n C 1 28 ASN 28 28 28 ASN ASN AC . n C 1 29 ILE 29 29 29 ILE ILE AC . n C 1 30 GLY 30 30 30 GLY GLY AC . n C 1 31 THR 31 31 31 THR THR AC . n C 1 32 ASN 32 32 32 ASN ASN AC . n C 1 33 THR 33 33 33 THR THR AC . n C 1 34 VAL 34 34 34 VAL VAL AC . n C 1 35 ASN 35 35 35 ASN ASN AC . n C 1 36 TRP 36 36 36 TRP TRP AC . n C 1 37 TYR 37 37 37 TYR TYR AC . n C 1 38 ARG 38 38 38 ARG ARG AC . n C 1 39 GLN 39 39 39 GLN GLN AC . n C 1 40 LEU 40 40 40 LEU LEU AC . n C 1 41 PRO 41 41 41 PRO PRO AC . n C 1 42 GLY 42 42 42 GLY GLY AC . n C 1 43 THR 43 43 43 THR THR AC . n C 1 44 ALA 44 44 44 ALA ALA AC . n C 1 45 PRO 45 45 45 PRO PRO AC . n C 1 46 LYS 46 46 46 LYS LYS AC . n C 1 47 VAL 47 47 47 VAL VAL AC . n C 1 48 LEU 48 48 48 LEU LEU AC . n C 1 49 ILE 49 49 49 ILE ILE AC . n C 1 50 TYR 50 50 50 TYR TYR AC . n C 1 51 SER 51 51 51 SER SER AC . n C 1 52 ASN 52 52 52 ASN ASN AC . n C 1 53 ASN 53 53 53 ASN ASN AC . n C 1 54 TYR 54 54 54 TYR TYR AC . n C 1 55 ARG 55 55 55 ARG ARG AC . n C 1 56 PRO 56 56 56 PRO PRO AC . n C 1 57 SER 57 57 57 SER SER AC . n C 1 58 ARG 58 58 58 ARG ARG AC . n C 1 59 VAL 59 59 59 VAL VAL AC . n C 1 60 PRO 60 60 60 PRO PRO AC . n C 1 61 ASP 61 61 61 ASP ASP AC . n C 1 62 ARG 62 62 62 ARG ARG AC . n C 1 63 PHE 63 63 63 PHE PHE AC . n C 1 64 THR 64 64 64 THR THR AC . n C 1 65 GLY 65 65 65 GLY GLY AC . n C 1 66 SER 66 66 66 SER SER AC . n C 1 67 LYS 67 67 67 LYS LYS AC . n C 1 68 SER 68 68 68 SER SER AC . n C 1 69 GLY 69 69 69 GLY GLY AC . n C 1 70 THR 70 70 70 THR THR AC . n C 1 71 SER 71 71 71 SER SER AC . n C 1 72 ALA 72 72 72 ALA ALA AC . n C 1 73 SER 73 73 73 SER SER AC . n C 1 74 LEU 74 74 74 LEU LEU AC . n C 1 75 ALA 75 75 75 ALA ALA AC . n C 1 76 ILE 76 76 76 ILE ILE AC . n C 1 77 SER 77 77 77 SER SER AC . n C 1 78 GLY 78 78 78 GLY GLY AC . n C 1 79 LEU 79 79 79 LEU LEU AC . n C 1 80 GLN 80 80 80 GLN GLN AC . n C 1 81 SER 81 81 81 SER SER AC . n C 1 82 GLU 82 82 82 GLU GLU AC . n C 1 83 ASP 83 83 83 ASP ASP AC . n C 1 84 GLU 84 84 84 GLU GLU AC . n C 1 85 ALA 85 85 85 ALA ALA AC . n C 1 86 ASP 86 86 86 ASP ASP AC . n C 1 87 TYR 87 87 87 TYR TYR AC . n C 1 88 TYR 88 88 88 TYR TYR AC . n C 1 89 CYS 89 89 89 CYS CYS AC . n C 1 90 ALA 90 90 90 ALA ALA AC . n C 1 91 ALA 91 91 91 ALA ALA AC . n C 1 92 TRP 92 92 92 TRP TRP AC . n C 1 93 ASP 93 93 93 ASP ASP AC . n C 1 94 ASP 94 94 94 ASP ASP AC . n C 1 95 SER 95 95 95 SER SER AC . n C 1 96 LEU 96 96 96 LEU LEU AC . n C 1 97 ASP 97 97 97 ASP ASP AC . n C 1 98 GLY 98 98 98 GLY GLY AC . n C 1 99 PRO 99 99 99 PRO PRO AC . n C 1 100 VAL 100 100 100 VAL VAL AC . n C 1 101 PHE 101 101 101 PHE PHE AC . n C 1 102 GLY 102 102 102 GLY GLY AC . n C 1 103 GLY 103 103 103 GLY GLY AC . n C 1 104 GLY 104 104 104 GLY GLY AC . n C 1 105 THR 105 105 105 THR THR AC . n C 1 106 GLN 106 106 106 GLN GLN AC . n C 1 107 LEU 107 107 107 LEU LEU AC . n C 1 108 THR 108 108 108 THR THR AC . n C 1 109 VAL 109 109 109 VAL VAL AC . n C 1 110 LEU 110 110 ? ? ? AC . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9LIW _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 9LIW _struct.title 'The cryo-EM structure of amyloid fibrils from heart of an AL amyloidosis patient (case 1) - polymorph 1.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9LIW _struct_keywords.text 'amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9LIW _struct_ref.pdbx_db_accession 9LIW _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9LIW AA 1 ? 110 ? 9LIW 1 ? 110 ? 1 110 2 1 9LIW AB 1 ? 110 ? 9LIW 1 ? 110 ? 1 110 3 1 9LIW AC 1 ? 110 ? 9LIW 1 ? 110 ? 1 110 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 89 SG ? ? AA CYS 22 AA CYS 89 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf2 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 89 SG ? ? AB CYS 22 AB CYS 89 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf3 disulf ? ? C CYS 22 SG ? ? ? 1_555 C CYS 89 SG ? ? AC CYS 22 AC CYS 89 1_555 ? ? ? ? ? ? ? 2.024 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 22 ? CYS A 89 ? CYS AA 22 ? 1_555 CYS AA 89 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS B 22 ? CYS B 89 ? CYS AB 22 ? 1_555 CYS AB 89 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS C 22 ? CYS C 89 ? CYS AC 22 ? 1_555 CYS AC 89 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? AA8 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel AA8 1 2 ? parallel AA8 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR B 19 ? SER B 21 ? THR AB 19 SER AB 21 AA1 2 THR A 19 ? SER A 21 ? THR AA 19 SER AA 21 AA1 3 THR C 19 ? SER C 21 ? THR AC 19 SER AC 21 AA2 1 TYR B 26 ? SER B 27 ? TYR AB 26 SER AB 27 AA2 2 TYR A 26 ? SER A 27 ? TYR AA 26 SER AA 27 AA2 3 TYR C 26 ? SER C 27 ? TYR AC 26 SER AC 27 AA3 1 VAL B 34 ? ASN B 35 ? VAL AB 34 ASN AB 35 AA3 2 VAL A 34 ? ASN A 35 ? VAL AA 34 ASN AA 35 AA3 3 VAL C 34 ? ASN C 35 ? VAL AC 34 ASN AC 35 AA4 1 ARG B 38 ? GLN B 39 ? ARG AB 38 GLN AB 39 AA4 2 ARG A 38 ? GLN A 39 ? ARG AA 38 GLN AA 39 AA4 3 ARG C 38 ? GLN C 39 ? ARG AC 38 GLN AC 39 AA5 1 THR B 64 ? GLY B 65 ? THR AB 64 GLY AB 65 AA5 2 THR A 64 ? GLY A 65 ? THR AA 64 GLY AA 65 AA5 3 THR C 64 ? GLY C 65 ? THR AC 64 GLY AC 65 AA6 1 LEU B 74 ? ILE B 76 ? LEU AB 74 ILE AB 76 AA6 2 LEU A 74 ? ILE A 76 ? LEU AA 74 ILE AA 76 AA6 3 LEU C 74 ? ILE C 76 ? LEU AC 74 ILE AC 76 AA7 1 ASP B 86 ? TYR B 88 ? ASP AB 86 TYR AB 88 AA7 2 ASP A 86 ? TYR A 88 ? ASP AA 86 TYR AA 88 AA7 3 ASP C 86 ? TYR C 88 ? ASP AC 86 TYR AC 88 AA8 1 GLN B 106 ? THR B 108 ? GLN AB 106 THR AB 108 AA8 2 GLN A 106 ? THR A 108 ? GLN AA 106 THR AA 108 AA8 3 GLN C 106 ? THR C 108 ? GLN AC 106 THR AC 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR B 19 ? O THR AB 19 N ILE A 20 ? N ILE AA 20 AA1 2 3 N THR A 19 ? N THR AA 19 O ILE C 20 ? O ILE AC 20 AA2 1 2 O TYR B 26 ? O TYR AB 26 N SER A 27 ? N SER AA 27 AA2 2 3 N TYR A 26 ? N TYR AA 26 O SER C 27 ? O SER AC 27 AA3 1 2 O ASN B 35 ? O ASN AB 35 N VAL A 34 ? N VAL AA 34 AA3 2 3 N ASN A 35 ? N ASN AA 35 O VAL C 34 ? O VAL AC 34 AA4 1 2 O GLN B 39 ? O GLN AB 39 N ARG A 38 ? N ARG AA 38 AA4 2 3 N GLN A 39 ? N GLN AA 39 O ARG C 38 ? O ARG AC 38 AA5 1 2 O THR B 64 ? O THR AB 64 N GLY A 65 ? N GLY AA 65 AA5 2 3 N THR A 64 ? N THR AA 64 O GLY C 65 ? O GLY AC 65 AA6 1 2 O ALA B 75 ? O ALA AB 75 N ILE A 76 ? N ILE AA 76 AA6 2 3 N ALA A 75 ? N ALA AA 75 O ILE C 76 ? O ILE AC 76 AA7 1 2 O TYR B 87 ? O TYR AB 87 N ASP A 86 ? N ASP AA 86 AA7 2 3 N TYR A 87 ? N TYR AA 87 O ASP C 86 ? O ASP AC 86 AA8 1 2 O GLN B 106 ? O GLN AB 106 N LEU A 107 ? N LEU AA 107 AA8 2 3 N GLN A 106 ? N GLN AA 106 O LEU C 107 ? O LEU AC 107 # _pdbx_entry_details.entry_id 9LIW _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR AA 13 ? ? -153.37 69.00 2 1 ASN AA 52 ? ? -160.05 111.02 3 1 GLU AA 82 ? ? -99.34 -65.23 4 1 THR AB 13 ? ? -153.39 68.95 5 1 ASN AB 52 ? ? -160.04 110.95 6 1 GLU AB 82 ? ? -99.36 -65.20 7 1 THR AC 13 ? ? -153.40 69.01 8 1 ASN AC 52 ? ? -160.03 110.94 9 1 GLU AC 82 ? ? -99.32 -65.26 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9LIW _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9LIW _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 14865 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type TISSUE _em_entity_assembly.name 'amyloid light chain' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9LIW _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2400 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9LIW _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9LIW _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 AA GLU 1 ? A GLU 1 2 1 Y 1 AA PRO 2 ? A PRO 2 3 1 Y 1 AA ALA 3 ? A ALA 3 4 1 Y 1 AA LEU 4 ? A LEU 4 5 1 Y 1 AA THR 5 ? A THR 5 6 1 Y 1 AA GLN 6 ? A GLN 6 7 1 Y 1 AA PRO 7 ? A PRO 7 8 1 Y 1 AA LEU 110 ? A LEU 110 9 1 Y 1 AB GLU 1 ? B GLU 1 10 1 Y 1 AB PRO 2 ? B PRO 2 11 1 Y 1 AB ALA 3 ? B ALA 3 12 1 Y 1 AB LEU 4 ? B LEU 4 13 1 Y 1 AB THR 5 ? B THR 5 14 1 Y 1 AB GLN 6 ? B GLN 6 15 1 Y 1 AB PRO 7 ? B PRO 7 16 1 Y 1 AB LEU 110 ? B LEU 110 17 1 Y 1 AC GLU 1 ? C GLU 1 18 1 Y 1 AC PRO 2 ? C PRO 2 19 1 Y 1 AC ALA 3 ? C ALA 3 20 1 Y 1 AC LEU 4 ? C LEU 4 21 1 Y 1 AC THR 5 ? C THR 5 22 1 Y 1 AC GLN 6 ? C GLN 6 23 1 Y 1 AC PRO 7 ? C PRO 7 24 1 Y 1 AC LEU 110 ? C LEU 110 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 ILE N N N N 137 ILE CA C N S 138 ILE C C N N 139 ILE O O N N 140 ILE CB C N S 141 ILE CG1 C N N 142 ILE CG2 C N N 143 ILE CD1 C N N 144 ILE OXT O N N 145 ILE H H N N 146 ILE H2 H N N 147 ILE HA H N N 148 ILE HB H N N 149 ILE HG12 H N N 150 ILE HG13 H N N 151 ILE HG21 H N N 152 ILE HG22 H N N 153 ILE HG23 H N N 154 ILE HD11 H N N 155 ILE HD12 H N N 156 ILE HD13 H N N 157 ILE HXT H N N 158 LEU N N N N 159 LEU CA C N S 160 LEU C C N N 161 LEU O O N N 162 LEU CB C N N 163 LEU CG C N N 164 LEU CD1 C N N 165 LEU CD2 C N N 166 LEU OXT O N N 167 LEU H H N N 168 LEU H2 H N N 169 LEU HA H N N 170 LEU HB2 H N N 171 LEU HB3 H N N 172 LEU HG H N N 173 LEU HD11 H N N 174 LEU HD12 H N N 175 LEU HD13 H N N 176 LEU HD21 H N N 177 LEU HD22 H N N 178 LEU HD23 H N N 179 LEU HXT H N N 180 LYS N N N N 181 LYS CA C N S 182 LYS C C N N 183 LYS O O N N 184 LYS CB C N N 185 LYS CG C N N 186 LYS CD C N N 187 LYS CE C N N 188 LYS NZ N N N 189 LYS OXT O N N 190 LYS H H N N 191 LYS H2 H N N 192 LYS HA H N N 193 LYS HB2 H N N 194 LYS HB3 H N N 195 LYS HG2 H N N 196 LYS HG3 H N N 197 LYS HD2 H N N 198 LYS HD3 H N N 199 LYS HE2 H N N 200 LYS HE3 H N N 201 LYS HZ1 H N N 202 LYS HZ2 H N N 203 LYS HZ3 H N N 204 LYS HXT H N N 205 PHE N N N N 206 PHE CA C N S 207 PHE C C N N 208 PHE O O N N 209 PHE CB C N N 210 PHE CG C Y N 211 PHE CD1 C Y N 212 PHE CD2 C Y N 213 PHE CE1 C Y N 214 PHE CE2 C Y N 215 PHE CZ C Y N 216 PHE OXT O N N 217 PHE H H N N 218 PHE H2 H N N 219 PHE HA H N N 220 PHE HB2 H N N 221 PHE HB3 H N N 222 PHE HD1 H N N 223 PHE HD2 H N N 224 PHE HE1 H N N 225 PHE HE2 H N N 226 PHE HZ H N N 227 PHE HXT H N N 228 PRO N N N N 229 PRO CA C N S 230 PRO C C N N 231 PRO O O N N 232 PRO CB C N N 233 PRO CG C N N 234 PRO CD C N N 235 PRO OXT O N N 236 PRO H H N N 237 PRO HA H N N 238 PRO HB2 H N N 239 PRO HB3 H N N 240 PRO HG2 H N N 241 PRO HG3 H N N 242 PRO HD2 H N N 243 PRO HD3 H N N 244 PRO HXT H N N 245 SER N N N N 246 SER CA C N S 247 SER C C N N 248 SER O O N N 249 SER CB C N N 250 SER OG O N N 251 SER OXT O N N 252 SER H H N N 253 SER H2 H N N 254 SER HA H N N 255 SER HB2 H N N 256 SER HB3 H N N 257 SER HG H N N 258 SER HXT H N N 259 THR N N N N 260 THR CA C N S 261 THR C C N N 262 THR O O N N 263 THR CB C N R 264 THR OG1 O N N 265 THR CG2 C N N 266 THR OXT O N N 267 THR H H N N 268 THR H2 H N N 269 THR HA H N N 270 THR HB H N N 271 THR HG1 H N N 272 THR HG21 H N N 273 THR HG22 H N N 274 THR HG23 H N N 275 THR HXT H N N 276 TRP N N N N 277 TRP CA C N S 278 TRP C C N N 279 TRP O O N N 280 TRP CB C N N 281 TRP CG C Y N 282 TRP CD1 C Y N 283 TRP CD2 C Y N 284 TRP NE1 N Y N 285 TRP CE2 C Y N 286 TRP CE3 C Y N 287 TRP CZ2 C Y N 288 TRP CZ3 C Y N 289 TRP CH2 C Y N 290 TRP OXT O N N 291 TRP H H N N 292 TRP H2 H N N 293 TRP HA H N N 294 TRP HB2 H N N 295 TRP HB3 H N N 296 TRP HD1 H N N 297 TRP HE1 H N N 298 TRP HE3 H N N 299 TRP HZ2 H N N 300 TRP HZ3 H N N 301 TRP HH2 H N N 302 TRP HXT H N N 303 TYR N N N N 304 TYR CA C N S 305 TYR C C N N 306 TYR O O N N 307 TYR CB C N N 308 TYR CG C Y N 309 TYR CD1 C Y N 310 TYR CD2 C Y N 311 TYR CE1 C Y N 312 TYR CE2 C Y N 313 TYR CZ C Y N 314 TYR OH O N N 315 TYR OXT O N N 316 TYR H H N N 317 TYR H2 H N N 318 TYR HA H N N 319 TYR HB2 H N N 320 TYR HB3 H N N 321 TYR HD1 H N N 322 TYR HD2 H N N 323 TYR HE1 H N N 324 TYR HE2 H N N 325 TYR HH H N N 326 TYR HXT H N N 327 VAL N N N N 328 VAL CA C N S 329 VAL C C N N 330 VAL O O N N 331 VAL CB C N N 332 VAL CG1 C N N 333 VAL CG2 C N N 334 VAL OXT O N N 335 VAL H H N N 336 VAL H2 H N N 337 VAL HA H N N 338 VAL HB H N N 339 VAL HG11 H N N 340 VAL HG12 H N N 341 VAL HG13 H N N 342 VAL HG21 H N N 343 VAL HG22 H N N 344 VAL HG23 H N N 345 VAL HXT H N N 346 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 ILE N CA sing N N 129 ILE N H sing N N 130 ILE N H2 sing N N 131 ILE CA C sing N N 132 ILE CA CB sing N N 133 ILE CA HA sing N N 134 ILE C O doub N N 135 ILE C OXT sing N N 136 ILE CB CG1 sing N N 137 ILE CB CG2 sing N N 138 ILE CB HB sing N N 139 ILE CG1 CD1 sing N N 140 ILE CG1 HG12 sing N N 141 ILE CG1 HG13 sing N N 142 ILE CG2 HG21 sing N N 143 ILE CG2 HG22 sing N N 144 ILE CG2 HG23 sing N N 145 ILE CD1 HD11 sing N N 146 ILE CD1 HD12 sing N N 147 ILE CD1 HD13 sing N N 148 ILE OXT HXT sing N N 149 LEU N CA sing N N 150 LEU N H sing N N 151 LEU N H2 sing N N 152 LEU CA C sing N N 153 LEU CA CB sing N N 154 LEU CA HA sing N N 155 LEU C O doub N N 156 LEU C OXT sing N N 157 LEU CB CG sing N N 158 LEU CB HB2 sing N N 159 LEU CB HB3 sing N N 160 LEU CG CD1 sing N N 161 LEU CG CD2 sing N N 162 LEU CG HG sing N N 163 LEU CD1 HD11 sing N N 164 LEU CD1 HD12 sing N N 165 LEU CD1 HD13 sing N N 166 LEU CD2 HD21 sing N N 167 LEU CD2 HD22 sing N N 168 LEU CD2 HD23 sing N N 169 LEU OXT HXT sing N N 170 LYS N CA sing N N 171 LYS N H sing N N 172 LYS N H2 sing N N 173 LYS CA C sing N N 174 LYS CA CB sing N N 175 LYS CA HA sing N N 176 LYS C O doub N N 177 LYS C OXT sing N N 178 LYS CB CG sing N N 179 LYS CB HB2 sing N N 180 LYS CB HB3 sing N N 181 LYS CG CD sing N N 182 LYS CG HG2 sing N N 183 LYS CG HG3 sing N N 184 LYS CD CE sing N N 185 LYS CD HD2 sing N N 186 LYS CD HD3 sing N N 187 LYS CE NZ sing N N 188 LYS CE HE2 sing N N 189 LYS CE HE3 sing N N 190 LYS NZ HZ1 sing N N 191 LYS NZ HZ2 sing N N 192 LYS NZ HZ3 sing N N 193 LYS OXT HXT sing N N 194 PHE N CA sing N N 195 PHE N H sing N N 196 PHE N H2 sing N N 197 PHE CA C sing N N 198 PHE CA CB sing N N 199 PHE CA HA sing N N 200 PHE C O doub N N 201 PHE C OXT sing N N 202 PHE CB CG sing N N 203 PHE CB HB2 sing N N 204 PHE CB HB3 sing N N 205 PHE CG CD1 doub Y N 206 PHE CG CD2 sing Y N 207 PHE CD1 CE1 sing Y N 208 PHE CD1 HD1 sing N N 209 PHE CD2 CE2 doub Y N 210 PHE CD2 HD2 sing N N 211 PHE CE1 CZ doub Y N 212 PHE CE1 HE1 sing N N 213 PHE CE2 CZ sing Y N 214 PHE CE2 HE2 sing N N 215 PHE CZ HZ sing N N 216 PHE OXT HXT sing N N 217 PRO N CA sing N N 218 PRO N CD sing N N 219 PRO N H sing N N 220 PRO CA C sing N N 221 PRO CA CB sing N N 222 PRO CA HA sing N N 223 PRO C O doub N N 224 PRO C OXT sing N N 225 PRO CB CG sing N N 226 PRO CB HB2 sing N N 227 PRO CB HB3 sing N N 228 PRO CG CD sing N N 229 PRO CG HG2 sing N N 230 PRO CG HG3 sing N N 231 PRO CD HD2 sing N N 232 PRO CD HD3 sing N N 233 PRO OXT HXT sing N N 234 SER N CA sing N N 235 SER N H sing N N 236 SER N H2 sing N N 237 SER CA C sing N N 238 SER CA CB sing N N 239 SER CA HA sing N N 240 SER C O doub N N 241 SER C OXT sing N N 242 SER CB OG sing N N 243 SER CB HB2 sing N N 244 SER CB HB3 sing N N 245 SER OG HG sing N N 246 SER OXT HXT sing N N 247 THR N CA sing N N 248 THR N H sing N N 249 THR N H2 sing N N 250 THR CA C sing N N 251 THR CA CB sing N N 252 THR CA HA sing N N 253 THR C O doub N N 254 THR C OXT sing N N 255 THR CB OG1 sing N N 256 THR CB CG2 sing N N 257 THR CB HB sing N N 258 THR OG1 HG1 sing N N 259 THR CG2 HG21 sing N N 260 THR CG2 HG22 sing N N 261 THR CG2 HG23 sing N N 262 THR OXT HXT sing N N 263 TRP N CA sing N N 264 TRP N H sing N N 265 TRP N H2 sing N N 266 TRP CA C sing N N 267 TRP CA CB sing N N 268 TRP CA HA sing N N 269 TRP C O doub N N 270 TRP C OXT sing N N 271 TRP CB CG sing N N 272 TRP CB HB2 sing N N 273 TRP CB HB3 sing N N 274 TRP CG CD1 doub Y N 275 TRP CG CD2 sing Y N 276 TRP CD1 NE1 sing Y N 277 TRP CD1 HD1 sing N N 278 TRP CD2 CE2 doub Y N 279 TRP CD2 CE3 sing Y N 280 TRP NE1 CE2 sing Y N 281 TRP NE1 HE1 sing N N 282 TRP CE2 CZ2 sing Y N 283 TRP CE3 CZ3 doub Y N 284 TRP CE3 HE3 sing N N 285 TRP CZ2 CH2 doub Y N 286 TRP CZ2 HZ2 sing N N 287 TRP CZ3 CH2 sing Y N 288 TRP CZ3 HZ3 sing N N 289 TRP CH2 HH2 sing N N 290 TRP OXT HXT sing N N 291 TYR N CA sing N N 292 TYR N H sing N N 293 TYR N H2 sing N N 294 TYR CA C sing N N 295 TYR CA CB sing N N 296 TYR CA HA sing N N 297 TYR C O doub N N 298 TYR C OXT sing N N 299 TYR CB CG sing N N 300 TYR CB HB2 sing N N 301 TYR CB HB3 sing N N 302 TYR CG CD1 doub Y N 303 TYR CG CD2 sing Y N 304 TYR CD1 CE1 sing Y N 305 TYR CD1 HD1 sing N N 306 TYR CD2 CE2 doub Y N 307 TYR CD2 HD2 sing N N 308 TYR CE1 CZ doub Y N 309 TYR CE1 HE1 sing N N 310 TYR CE2 CZ sing Y N 311 TYR CE2 HE2 sing N N 312 TYR CZ OH sing N N 313 TYR OH HH sing N N 314 TYR OXT HXT sing N N 315 VAL N CA sing N N 316 VAL N H sing N N 317 VAL N H2 sing N N 318 VAL CA C sing N N 319 VAL CA CB sing N N 320 VAL CA HA sing N N 321 VAL C O doub N N 322 VAL C OXT sing N N 323 VAL CB CG1 sing N N 324 VAL CB CG2 sing N N 325 VAL CB HB sing N N 326 VAL CG1 HG11 sing N N 327 VAL CG1 HG12 sing N N 328 VAL CG1 HG13 sing N N 329 VAL CG2 HG21 sing N N 330 VAL CG2 HG22 sing N N 331 VAL CG2 HG23 sing N N 332 VAL OXT HXT sing N N 333 # _em_admin.current_status REL _em_admin.deposition_date 2025-01-14 _em_admin.deposition_site PDBJ _em_admin.entry_id 9LIW _em_admin.last_update 2026-01-21 _em_admin.map_release_date 2026-01-21 _em_admin.title 'The cryo-EM structure of amyloid fibrils from heart of an AL amyloidosis patient (case 1) - polymorph 1.' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -0.61 _em_helical_entity.axial_rise_per_subunit 4.84 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 55 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9LIW _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #