HEADER VIRAL PROTEIN 15-JAN-25 9LJS TITLE STRUCTURAL INSIGHTS INTO THE POLYMERASE CATALYZED FAD-CAPPING OF TITLE 2 HEPATITIS C VIRAL RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NS5B,P68; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(P*GP*GP*U)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS JFH-1; SOURCE 3 ORGANISM_TAXID: 356411; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS HEPATITIS C VIRUS, RNA POLYMERASE COMPLEX, FAD CAP, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.P.WANG,R.ZHAO,W.S.HU,H.N.LI,J.M.CAO,X.ZHOU,Y.XIANG REVDAT 2 20-AUG-25 9LJS 1 JRNL REVDAT 1 13-AUG-25 9LJS 0 JRNL AUTH D.P.WANG,R.ZHAO,W.S.HU,H.N.LI,J.M.CAO,X.ZHOU,Y.XIANG JRNL TITL STRUCTURAL INSIGHTS INTO POLYMERASE-CATALYZED FAD CAPPING OF JRNL TITL 2 HEPATITIS C VIRUS RNA. JRNL REF NAT COMMUN V. 16 7298 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40775214 JRNL DOI 10.1038/S41467-025-62609-W REMARK 2 REMARK 2 RESOLUTION. 2.96 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 21335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.6200 - 8.8000 0.99 1337 133 0.1268 0.1816 REMARK 3 2 8.7900 - 7.0600 1.00 1359 138 0.1394 0.1720 REMARK 3 3 7.0600 - 6.1900 1.00 1339 143 0.1838 0.2071 REMARK 3 4 6.1900 - 5.6400 1.00 1357 144 0.1804 0.1898 REMARK 3 5 5.6300 - 5.2400 1.00 1336 140 0.1644 0.1737 REMARK 3 6 5.2400 - 4.9300 1.00 1361 138 0.1483 0.2252 REMARK 3 7 4.9300 - 4.6900 1.00 1350 144 0.1448 0.2051 REMARK 3 8 4.6900 - 4.4900 1.00 1331 142 0.1489 0.2035 REMARK 3 9 4.4900 - 4.3200 1.00 1346 144 0.1307 0.1855 REMARK 3 10 4.3100 - 4.1700 1.00 1352 142 0.1373 0.1754 REMARK 3 11 4.1700 - 4.0400 1.00 1349 144 0.1524 0.1743 REMARK 3 12 4.0400 - 3.9200 1.00 1351 142 0.1467 0.2186 REMARK 3 13 3.9200 - 3.8200 0.99 1345 139 0.1660 0.2057 REMARK 3 14 3.8200 - 3.7300 1.00 1338 147 0.1636 0.1988 REMARK 3 15 3.7300 - 3.6400 1.00 1336 138 0.1762 0.2279 REMARK 3 16 3.6400 - 3.5700 1.00 1339 135 0.1828 0.2549 REMARK 3 17 3.5700 - 3.5000 1.00 1366 144 0.1831 0.2314 REMARK 3 18 3.4900 - 3.4300 1.00 1372 132 0.2041 0.2369 REMARK 3 19 3.4300 - 3.3700 1.00 1328 138 0.2173 0.2572 REMARK 3 20 3.3700 - 3.3100 1.00 1350 131 0.2171 0.2961 REMARK 3 21 3.3100 - 3.2600 1.00 1372 140 0.2331 0.3152 REMARK 3 22 3.2600 - 3.2100 1.00 1311 140 0.2431 0.3074 REMARK 3 23 3.2100 - 3.1600 0.99 1376 133 0.2452 0.2863 REMARK 3 24 3.1600 - 3.1200 1.00 1343 138 0.2520 0.3325 REMARK 3 25 3.1200 - 3.0700 0.99 1349 136 0.2597 0.3092 REMARK 3 26 3.0700 - 3.0400 0.98 1300 128 0.2701 0.3829 REMARK 3 27 3.0300 - 3.0000 0.99 1365 144 0.2925 0.3381 REMARK 3 28 3.0000 - 2.9600 0.98 1324 132 0.3098 0.3416 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4608 REMARK 3 ANGLE : 1.095 6286 REMARK 3 CHIRALITY : 0.052 706 REMARK 3 PLANARITY : 0.010 776 REMARK 3 DIHEDRAL : 16.114 1718 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 17-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055263. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 289.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.760 REMARK 200 RESOLUTION RANGE LOW (A) : 120.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 100 MM BIS-TRIS REMARK 280 PROPANE/HYDROCHLORIC ACID, PH 8.5, 200 MM SODIUM MALONATE REMARK 280 DIBASIC PRECIPITANT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.99067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.99533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.49300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.49767 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.48833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U B 4 C5 - C4 - O4 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 24 78.42 -108.19 REMARK 500 ARG A 98 -178.93 -58.48 REMARK 500 TYR A 101 37.37 -95.00 REMARK 500 PHE A 193 10.45 56.04 REMARK 500 LEU A 260 -52.21 -132.12 REMARK 500 MET A 447 119.08 -170.07 REMARK 500 THR A 552 -161.49 -128.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 ASP A 318 OD1 78.9 REMARK 620 3 CDP A 602 O2A 75.4 78.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 THR A 221 O 87.0 REMARK 620 3 ASP A 318 OD2 73.1 78.8 REMARK 620 4 CDP A 602 O2B 173.1 99.3 105.2 REMARK 620 5 CDP A 602 O2A 89.2 175.9 98.9 84.6 REMARK 620 6 HOH A 721 O 102.6 80.7 159.2 81.4 101.4 REMARK 620 N 1 2 3 4 5 DBREF 9LJS A 1 553 UNP Q99IB8 POLG_HCVJF 2443 2995 DBREF 9LJS B 2 4 PDB 9LJS 9LJS 2 4 SEQADV 9LJS SER A 0 UNP Q99IB8 EXPRESSION TAG SEQADV 9LJS GLY A 15 UNP Q99IB8 SER 2457 ENGINEERED MUTATION SEQADV 9LJS GLN A 86 UNP Q99IB8 GLU 2528 ENGINEERED MUTATION SEQADV 9LJS GLN A 87 UNP Q99IB8 GLU 2529 ENGINEERED MUTATION SEQADV 9LJS HIS A 223 UNP Q99IB8 CYS 2665 ENGINEERED MUTATION SEQADV 9LJS ILE A 321 UNP Q99IB8 VAL 2763 ENGINEERED MUTATION SEQRES 1 A 554 SER SER MET SER TYR SER TRP THR GLY ALA LEU ILE THR SEQRES 2 A 554 PRO CYS GLY PRO GLU GLU GLU LYS LEU PRO ILE ASN PRO SEQRES 3 A 554 LEU SER ASN SER LEU LEU ARG TYR HIS ASN LYS VAL TYR SEQRES 4 A 554 CYS THR THR SER LYS SER ALA SER GLN ARG ALA LYS LYS SEQRES 5 A 554 VAL THR PHE ASP ARG THR GLN VAL LEU ASP ALA HIS TYR SEQRES 6 A 554 ASP SER VAL LEU LYS ASP ILE LYS LEU ALA ALA SER LYS SEQRES 7 A 554 VAL SER ALA ARG LEU LEU THR LEU GLN GLN ALA CYS GLN SEQRES 8 A 554 LEU THR PRO PRO HIS SER ALA ARG SER LYS TYR GLY PHE SEQRES 9 A 554 GLY ALA LYS GLU VAL ARG SER LEU SER GLY ARG ALA VAL SEQRES 10 A 554 ASN HIS ILE LYS SER VAL TRP LYS ASP LEU LEU GLU ASP SEQRES 11 A 554 PRO GLN THR PRO ILE PRO THR THR ILE MET ALA LYS ASN SEQRES 12 A 554 GLU VAL PHE CYS VAL ASP PRO ALA LYS GLY GLY LYS LYS SEQRES 13 A 554 PRO ALA ARG LEU ILE VAL TYR PRO ASP LEU GLY VAL ARG SEQRES 14 A 554 VAL CYS GLU LYS MET ALA LEU TYR ASP ILE THR GLN LYS SEQRES 15 A 554 LEU PRO GLN ALA VAL MET GLY ALA SER TYR GLY PHE GLN SEQRES 16 A 554 TYR SER PRO ALA GLN ARG VAL GLU TYR LEU LEU LYS ALA SEQRES 17 A 554 TRP ALA GLU LYS LYS ASP PRO MET GLY PHE SER TYR ASP SEQRES 18 A 554 THR ARG HIS PHE ASP SER THR VAL THR GLU ARG ASP ILE SEQRES 19 A 554 ARG THR GLU GLU SER ILE TYR GLN ALA CYS SER LEU PRO SEQRES 20 A 554 GLU GLU ALA ARG THR ALA ILE HIS SER LEU THR GLU ARG SEQRES 21 A 554 LEU TYR VAL GLY GLY PRO MET PHE ASN SER LYS GLY GLN SEQRES 22 A 554 THR CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU SEQRES 23 A 554 THR THR SER MET GLY ASN THR ILE THR CYS TYR VAL LYS SEQRES 24 A 554 ALA LEU ALA ALA CYS LYS ALA ALA GLY ILE VAL ALA PRO SEQRES 25 A 554 THR MET LEU VAL CYS GLY ASP ASP LEU ILE VAL ILE SER SEQRES 26 A 554 GLU SER GLN GLY THR GLU GLU ASP GLU ARG ASN LEU ARG SEQRES 27 A 554 ALA PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO SEQRES 28 A 554 GLY ASP PRO PRO ARG PRO GLU TYR ASP LEU GLU LEU ILE SEQRES 29 A 554 THR SER CYS SER SER ASN VAL SER VAL ALA LEU GLY PRO SEQRES 30 A 554 ARG GLY ARG ARG ARG TYR TYR LEU THR ARG ASP PRO THR SEQRES 31 A 554 THR PRO LEU ALA ARG ALA ALA TRP GLU THR VAL ARG HIS SEQRES 32 A 554 SER PRO ILE ASN SER TRP LEU GLY ASN ILE ILE GLN TYR SEQRES 33 A 554 ALA PRO THR ILE TRP VAL ARG MET VAL LEU MET THR HIS SEQRES 34 A 554 PHE PHE SER ILE LEU MET VAL GLN ASP THR LEU ASP GLN SEQRES 35 A 554 ASN LEU ASN PHE GLU MET TYR GLY SER VAL TYR SER VAL SEQRES 36 A 554 ASN PRO LEU ASP LEU PRO ALA ILE ILE GLU ARG LEU HIS SEQRES 37 A 554 GLY LEU ASP ALA PHE SER MET HIS THR TYR SER HIS HIS SEQRES 38 A 554 GLU LEU THR ARG VAL ALA SER ALA LEU ARG LYS LEU GLY SEQRES 39 A 554 ALA PRO PRO LEU ARG VAL TRP LYS SER ARG ALA ARG ALA SEQRES 40 A 554 VAL ARG ALA SER LEU ILE SER ARG GLY GLY LYS ALA ALA SEQRES 41 A 554 VAL CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL LYS THR SEQRES 42 A 554 LYS LEU LYS LEU THR PRO LEU PRO GLU ALA ARG LEU LEU SEQRES 43 A 554 ASP LEU SER SER TRP PHE THR VAL SEQRES 1 B 3 G G U HET FAD A 601 53 HET CDP A 602 25 HET MN A 603 1 HET MN A 604 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM CDP CYTIDINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 CDP C9 H15 N3 O11 P2 FORMUL 5 MN 2(MN 2+) FORMUL 7 HOH *47(H2 O) HELIX 1 AA1 TYR A 33 ASN A 35 5 3 HELIX 2 AA2 THR A 41 LYS A 43 5 3 HELIX 3 AA3 SER A 44 THR A 53 1 10 HELIX 4 AA4 ASP A 61 LYS A 77 1 17 HELIX 5 AA5 THR A 84 LEU A 91 1 8 HELIX 6 AA6 GLY A 104 SER A 110 1 7 HELIX 7 AA7 SER A 112 ASP A 129 1 18 HELIX 8 AA8 ASP A 148 GLY A 152 5 5 HELIX 9 AA9 ASP A 164 GLN A 180 1 17 HELIX 10 AB1 LYS A 181 GLY A 188 1 8 HELIX 11 AB2 ALA A 189 TYR A 191 5 3 HELIX 12 AB3 SER A 196 LYS A 211 1 16 HELIX 13 AB4 HIS A 223 VAL A 228 1 6 HELIX 14 AB5 THR A 229 ALA A 242 1 14 HELIX 15 AB6 PRO A 246 LEU A 260 1 15 HELIX 16 AB7 THR A 286 ALA A 306 1 21 HELIX 17 AB8 GLY A 328 TYR A 346 1 19 HELIX 18 AB9 ASP A 359 ILE A 363 5 5 HELIX 19 AC1 PRO A 388 ALA A 396 1 9 HELIX 20 AC2 PRO A 404 TYR A 415 1 12 HELIX 21 AC3 THR A 418 VAL A 424 1 7 HELIX 22 AC4 VAL A 424 GLN A 436 1 13 HELIX 23 AC5 ASN A 455 LEU A 457 5 3 HELIX 24 AC6 ASP A 458 GLY A 468 1 11 HELIX 25 AC7 LEU A 469 SER A 473 5 5 HELIX 26 AC8 SER A 478 GLY A 493 1 16 HELIX 27 AC9 PRO A 496 SER A 513 1 18 HELIX 28 AD1 GLY A 515 PHE A 526 1 12 HELIX 29 AD2 ASN A 527 VAL A 530 5 4 HELIX 30 AD3 LEU A 539 LEU A 545 1 7 HELIX 31 AD4 LEU A 547 THR A 552 5 6 SHEET 1 AA1 5 TYR A 4 TRP A 6 0 SHEET 2 AA1 5 THR A 273 ARG A 277 -1 O TYR A 276 N SER A 5 SHEET 3 AA1 5 GLY A 264 PHE A 267 -1 N MET A 266 O CYS A 274 SHEET 4 AA1 5 THR A 136 ALA A 140 1 N THR A 136 O PHE A 267 SHEET 5 AA1 5 LEU A 159 TYR A 162 -1 O TYR A 162 N THR A 137 SHEET 1 AA2 2 VAL A 37 CYS A 39 0 SHEET 2 AA2 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AA3 3 PRO A 214 ASP A 220 0 SHEET 2 AA3 3 ASP A 319 GLU A 325 -1 O SER A 324 N MET A 215 SHEET 3 AA3 3 VAL A 309 CYS A 316 -1 N VAL A 309 O GLU A 325 SHEET 1 AA4 3 ARG A 381 THR A 385 0 SHEET 2 AA4 3 ASN A 369 LEU A 374 -1 N ALA A 373 O ARG A 381 SHEET 3 AA4 3 THR A 476 TYR A 477 -1 O THR A 476 N LEU A 374 SHEET 1 AA5 2 LEU A 443 MET A 447 0 SHEET 2 AA5 2 SER A 450 VAL A 454 -1 O TYR A 452 N PHE A 445 LINK OD1 ASP A 220 MN MN A 603 1555 1555 2.31 LINK OD1 ASP A 220 MN MN A 604 1555 1555 2.37 LINK O THR A 221 MN MN A 604 1555 1555 2.24 LINK OD1 ASP A 318 MN MN A 603 1555 1555 2.66 LINK OD2 ASP A 318 MN MN A 604 1555 1555 2.25 LINK O2A CDP A 602 MN MN A 603 1555 1555 2.61 LINK O2B CDP A 602 MN MN A 604 1555 1555 2.26 LINK O2A CDP A 602 MN MN A 604 1555 1555 1.90 LINK MN MN A 604 O HOH A 721 1555 1555 2.58 CRYST1 139.003 139.003 92.986 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007194 0.004154 0.000000 0.00000 SCALE2 0.000000 0.008307 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010754 0.00000 CONECT 1726 4496 4497 CONECT 1731 4497 CONECT 2470 4496 CONECT 2471 4497 CONECT 4418 4419 4420 4421 4470 CONECT 4419 4418 CONECT 4420 4418 CONECT 4421 4418 4422 CONECT 4422 4421 4423 CONECT 4423 4422 4424 4425 CONECT 4424 4423 4429 CONECT 4425 4423 4426 4427 CONECT 4426 4425 CONECT 4427 4425 4428 4429 CONECT 4428 4427 CONECT 4429 4424 4427 4430 CONECT 4430 4429 4431 4439 CONECT 4431 4430 4432 CONECT 4432 4431 4433 CONECT 4433 4432 4434 4439 CONECT 4434 4433 4435 4436 CONECT 4435 4434 CONECT 4436 4434 4437 CONECT 4437 4436 4438 CONECT 4438 4437 4439 CONECT 4439 4430 4433 4438 CONECT 4440 4441 4457 CONECT 4441 4440 4442 4443 CONECT 4442 4441 CONECT 4443 4441 4444 CONECT 4444 4443 4445 4446 CONECT 4445 4444 CONECT 4446 4444 4447 4457 CONECT 4447 4446 4448 CONECT 4448 4447 4449 4455 CONECT 4449 4448 4450 CONECT 4450 4449 4451 4452 CONECT 4451 4450 CONECT 4452 4450 4453 4454 CONECT 4453 4452 CONECT 4454 4452 4455 CONECT 4455 4448 4454 4456 CONECT 4456 4455 4457 4458 CONECT 4457 4440 4446 4456 CONECT 4458 4456 4459 CONECT 4459 4458 4460 4461 CONECT 4460 4459 CONECT 4461 4459 4462 4463 CONECT 4462 4461 CONECT 4463 4461 4464 4465 CONECT 4464 4463 CONECT 4465 4463 4466 CONECT 4466 4465 4467 CONECT 4467 4466 4468 4469 4470 CONECT 4468 4467 CONECT 4469 4467 CONECT 4470 4418 4467 CONECT 4471 4472 CONECT 4472 4471 4473 4474 4475 CONECT 4473 4472 CONECT 4474 4472 4497 CONECT 4475 4472 4476 CONECT 4476 4475 4477 4478 4479 CONECT 4477 4476 CONECT 4478 4476 4496 4497 CONECT 4479 4476 4480 CONECT 4480 4479 4481 CONECT 4481 4480 4482 4483 CONECT 4482 4481 4487 CONECT 4483 4481 4484 4485 CONECT 4484 4483 CONECT 4485 4483 4486 4487 CONECT 4486 4485 CONECT 4487 4482 4485 4488 CONECT 4488 4487 4489 4495 CONECT 4489 4488 4490 4491 CONECT 4490 4489 CONECT 4491 4489 4492 CONECT 4492 4491 4493 4494 CONECT 4493 4492 CONECT 4494 4492 4495 CONECT 4495 4488 4494 CONECT 4496 1726 2470 4478 CONECT 4497 1726 1731 2471 4474 CONECT 4497 4478 4518 CONECT 4518 4497 MASTER 295 0 4 31 15 0 0 6 4534 2 86 44 END