HEADER VIRAL PROTEIN 15-JAN-25 9LJU TITLE STRUCTURAL INSIGHTS INTO THE POLYMERASE CATALYZED FAD-CAPPING OF TITLE 2 HEPATITIS C VIRAL RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NS5B,P68; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(P*CP*CP*U)-3'); COMPND 10 CHAIN: T; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS JFH-1; SOURCE 3 ORGANISM_TAXID: 356411; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630 KEYWDS HEPATITIS C VIRUS, RNA POLYMERASE COMPLEX, FAD CAP, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.P.WANG,R.ZHAO,W.S.HU,H.N.LI,J.M.CAO,X.ZHOU,Y.XIANG REVDAT 2 20-AUG-25 9LJU 1 JRNL REVDAT 1 13-AUG-25 9LJU 0 JRNL AUTH D.P.WANG,R.ZHAO,W.S.HU,H.N.LI,J.M.CAO,X.ZHOU,Y.XIANG JRNL TITL STRUCTURAL INSIGHTS INTO POLYMERASE-CATALYZED FAD CAPPING OF JRNL TITL 2 HEPATITIS C VIRUS RNA. JRNL REF NAT COMMUN V. 16 7298 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40775214 JRNL DOI 10.1038/S41467-025-62609-W REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 22228 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.6300 - 8.6000 0.97 1415 148 0.1261 0.1418 REMARK 3 2 8.5800 - 6.8900 1.00 1480 147 0.1393 0.1485 REMARK 3 3 6.8900 - 6.0400 1.00 1473 140 0.1664 0.2336 REMARK 3 4 6.0400 - 5.5000 1.00 1478 136 0.1625 0.1854 REMARK 3 5 5.5000 - 5.1100 1.00 1473 139 0.1491 0.1765 REMARK 3 6 5.1100 - 4.8100 0.99 1439 144 0.1346 0.1749 REMARK 3 7 4.8100 - 4.5700 1.00 1504 150 0.1368 0.1766 REMARK 3 8 4.5700 - 4.3800 1.00 1434 150 0.1289 0.1790 REMARK 3 9 4.3800 - 4.2100 0.99 1464 147 0.1319 0.1679 REMARK 3 10 4.2100 - 4.0700 0.98 1458 133 0.1449 0.1835 REMARK 3 11 4.0600 - 3.9400 0.99 1472 146 0.1494 0.1989 REMARK 3 12 3.9400 - 3.8300 0.99 1447 142 0.1607 0.2196 REMARK 3 13 3.8300 - 3.7300 1.00 1447 146 0.1645 0.2016 REMARK 3 14 3.7300 - 3.6400 0.99 1505 132 0.1785 0.2936 REMARK 3 15 3.6400 - 3.5500 0.99 1442 142 0.1901 0.2287 REMARK 3 16 3.5500 - 3.4800 0.99 1465 142 0.1881 0.2403 REMARK 3 17 3.4800 - 3.4100 0.99 1461 148 0.2156 0.2736 REMARK 3 18 3.4100 - 3.3400 1.00 1466 138 0.2168 0.3240 REMARK 3 19 3.3400 - 3.2800 0.99 1454 130 0.2268 0.2852 REMARK 3 20 3.2800 - 3.2300 1.00 1470 138 0.2250 0.2769 REMARK 3 21 3.2300 - 3.1800 0.98 1468 152 0.2416 0.3329 REMARK 3 22 3.1800 - 3.1300 1.00 1481 145 0.2447 0.2690 REMARK 3 23 3.1300 - 3.0800 0.98 1419 140 0.2430 0.2870 REMARK 3 24 3.0800 - 3.0400 0.98 1480 140 0.2664 0.2982 REMARK 3 25 3.0400 - 3.0000 0.98 1422 136 0.2725 0.3485 REMARK 3 26 3.0000 - 2.9600 0.95 1428 152 0.2907 0.2819 REMARK 3 27 2.9600 - 2.9200 0.96 1414 138 0.2992 0.3445 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4604 REMARK 3 ANGLE : 1.062 6279 REMARK 3 CHIRALITY : 0.051 706 REMARK 3 PLANARITY : 0.009 776 REMARK 3 DIHEDRAL : 17.438 1714 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 17-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 289.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26742 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.740 REMARK 200 RESOLUTION RANGE LOW (A) : 93.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 100 MM BIS-TRIS REMARK 280 PROPANE/HYDROCHLORIC ACID, PH 8.5, 200 MM SODIUM MALONATE REMARK 280 DIBASIC PRECIPITANT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.09333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.04667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.57000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.52333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.61667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C T 2 C6 - N1 - C2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 131 -44.68 -136.00 REMARK 500 LYS A 181 -37.46 -134.30 REMARK 500 LEU A 260 -53.90 -130.04 REMARK 500 GLN A 327 30.56 -95.82 REMARK 500 ALA A 348 58.62 -140.50 REMARK 500 VAL A 424 -68.10 -103.02 REMARK 500 SER A 473 12.00 -141.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 THR A 221 O 88.3 REMARK 620 3 ASP A 318 OD2 76.7 91.5 REMARK 620 4 GDP A 602 O1B 163.1 84.1 118.4 REMARK 620 5 GDP A 602 O3A 132.0 137.5 108.5 53.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 604 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD1 REMARK 620 2 ASP A 318 OD1 99.0 REMARK 620 3 ASP A 319 OD1 84.4 80.6 REMARK 620 4 GDP A 602 O1A 130.9 114.9 133.3 REMARK 620 N 1 2 3 DBREF 9LJU A 1 553 UNP Q99IB8 POLG_HCVJF 2443 2995 DBREF 9LJU T 2 4 PDB 9LJU 9LJU 2 4 SEQADV 9LJU SER A 0 UNP Q99IB8 EXPRESSION TAG SEQADV 9LJU GLY A 15 UNP Q99IB8 SER 2457 ENGINEERED MUTATION SEQADV 9LJU GLN A 86 UNP Q99IB8 GLU 2528 ENGINEERED MUTATION SEQADV 9LJU GLN A 87 UNP Q99IB8 GLU 2529 ENGINEERED MUTATION SEQADV 9LJU HIS A 223 UNP Q99IB8 CYS 2665 ENGINEERED MUTATION SEQADV 9LJU ILE A 321 UNP Q99IB8 VAL 2763 ENGINEERED MUTATION SEQRES 1 A 554 SER SER MET SER TYR SER TRP THR GLY ALA LEU ILE THR SEQRES 2 A 554 PRO CYS GLY PRO GLU GLU GLU LYS LEU PRO ILE ASN PRO SEQRES 3 A 554 LEU SER ASN SER LEU LEU ARG TYR HIS ASN LYS VAL TYR SEQRES 4 A 554 CYS THR THR SER LYS SER ALA SER GLN ARG ALA LYS LYS SEQRES 5 A 554 VAL THR PHE ASP ARG THR GLN VAL LEU ASP ALA HIS TYR SEQRES 6 A 554 ASP SER VAL LEU LYS ASP ILE LYS LEU ALA ALA SER LYS SEQRES 7 A 554 VAL SER ALA ARG LEU LEU THR LEU GLN GLN ALA CYS GLN SEQRES 8 A 554 LEU THR PRO PRO HIS SER ALA ARG SER LYS TYR GLY PHE SEQRES 9 A 554 GLY ALA LYS GLU VAL ARG SER LEU SER GLY ARG ALA VAL SEQRES 10 A 554 ASN HIS ILE LYS SER VAL TRP LYS ASP LEU LEU GLU ASP SEQRES 11 A 554 PRO GLN THR PRO ILE PRO THR THR ILE MET ALA LYS ASN SEQRES 12 A 554 GLU VAL PHE CYS VAL ASP PRO ALA LYS GLY GLY LYS LYS SEQRES 13 A 554 PRO ALA ARG LEU ILE VAL TYR PRO ASP LEU GLY VAL ARG SEQRES 14 A 554 VAL CYS GLU LYS MET ALA LEU TYR ASP ILE THR GLN LYS SEQRES 15 A 554 LEU PRO GLN ALA VAL MET GLY ALA SER TYR GLY PHE GLN SEQRES 16 A 554 TYR SER PRO ALA GLN ARG VAL GLU TYR LEU LEU LYS ALA SEQRES 17 A 554 TRP ALA GLU LYS LYS ASP PRO MET GLY PHE SER TYR ASP SEQRES 18 A 554 THR ARG HIS PHE ASP SER THR VAL THR GLU ARG ASP ILE SEQRES 19 A 554 ARG THR GLU GLU SER ILE TYR GLN ALA CYS SER LEU PRO SEQRES 20 A 554 GLU GLU ALA ARG THR ALA ILE HIS SER LEU THR GLU ARG SEQRES 21 A 554 LEU TYR VAL GLY GLY PRO MET PHE ASN SER LYS GLY GLN SEQRES 22 A 554 THR CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU SEQRES 23 A 554 THR THR SER MET GLY ASN THR ILE THR CYS TYR VAL LYS SEQRES 24 A 554 ALA LEU ALA ALA CYS LYS ALA ALA GLY ILE VAL ALA PRO SEQRES 25 A 554 THR MET LEU VAL CYS GLY ASP ASP LEU ILE VAL ILE SER SEQRES 26 A 554 GLU SER GLN GLY THR GLU GLU ASP GLU ARG ASN LEU ARG SEQRES 27 A 554 ALA PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO SEQRES 28 A 554 GLY ASP PRO PRO ARG PRO GLU TYR ASP LEU GLU LEU ILE SEQRES 29 A 554 THR SER CYS SER SER ASN VAL SER VAL ALA LEU GLY PRO SEQRES 30 A 554 ARG GLY ARG ARG ARG TYR TYR LEU THR ARG ASP PRO THR SEQRES 31 A 554 THR PRO LEU ALA ARG ALA ALA TRP GLU THR VAL ARG HIS SEQRES 32 A 554 SER PRO ILE ASN SER TRP LEU GLY ASN ILE ILE GLN TYR SEQRES 33 A 554 ALA PRO THR ILE TRP VAL ARG MET VAL LEU MET THR HIS SEQRES 34 A 554 PHE PHE SER ILE LEU MET VAL GLN ASP THR LEU ASP GLN SEQRES 35 A 554 ASN LEU ASN PHE GLU MET TYR GLY SER VAL TYR SER VAL SEQRES 36 A 554 ASN PRO LEU ASP LEU PRO ALA ILE ILE GLU ARG LEU HIS SEQRES 37 A 554 GLY LEU ASP ALA PHE SER MET HIS THR TYR SER HIS HIS SEQRES 38 A 554 GLU LEU THR ARG VAL ALA SER ALA LEU ARG LYS LEU GLY SEQRES 39 A 554 ALA PRO PRO LEU ARG VAL TRP LYS SER ARG ALA ARG ALA SEQRES 40 A 554 VAL ARG ALA SER LEU ILE SER ARG GLY GLY LYS ALA ALA SEQRES 41 A 554 VAL CYS GLY ARG TYR LEU PHE ASN TRP ALA VAL LYS THR SEQRES 42 A 554 LYS LEU LYS LEU THR PRO LEU PRO GLU ALA ARG LEU LEU SEQRES 43 A 554 ASP LEU SER SER TRP PHE THR VAL SEQRES 1 T 3 C C U HET FAD A 601 53 HET GDP A 602 28 HET MN A 603 1 HET MN A 604 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 MN 2(MN 2+) FORMUL 7 HOH *60(H2 O) HELIX 1 AA1 TYR A 33 ASN A 35 5 3 HELIX 2 AA2 THR A 41 LYS A 43 5 3 HELIX 3 AA3 SER A 44 THR A 53 1 10 HELIX 4 AA4 ASP A 61 SER A 76 1 16 HELIX 5 AA5 THR A 84 LEU A 91 1 8 HELIX 6 AA6 GLY A 104 SER A 110 1 7 HELIX 7 AA7 SER A 112 ASP A 129 1 18 HELIX 8 AA8 ASP A 164 GLN A 180 1 17 HELIX 9 AA9 LYS A 181 GLY A 188 1 8 HELIX 10 AB1 ALA A 189 TYR A 191 5 3 HELIX 11 AB2 SER A 196 LYS A 211 1 16 HELIX 12 AB3 HIS A 223 VAL A 228 1 6 HELIX 13 AB4 THR A 229 ALA A 242 1 14 HELIX 14 AB5 PRO A 246 LEU A 260 1 15 HELIX 15 AB6 THR A 286 GLY A 307 1 22 HELIX 16 AB7 GLY A 328 TYR A 346 1 19 HELIX 17 AB8 ASP A 359 ILE A 363 5 5 HELIX 18 AB9 PRO A 388 ALA A 395 1 8 HELIX 19 AC1 PRO A 404 TYR A 415 1 12 HELIX 20 AC2 THR A 418 VAL A 424 1 7 HELIX 21 AC3 VAL A 424 GLN A 436 1 13 HELIX 22 AC4 ASN A 455 LEU A 457 5 3 HELIX 23 AC5 ASP A 458 GLY A 468 1 11 HELIX 24 AC6 LEU A 469 SER A 473 5 5 HELIX 25 AC7 SER A 478 GLY A 493 1 16 HELIX 26 AC8 PRO A 496 ARG A 514 1 19 HELIX 27 AC9 GLY A 515 PHE A 526 1 12 HELIX 28 AD1 ASN A 527 VAL A 530 5 4 HELIX 29 AD2 LEU A 539 LEU A 544 1 6 SHEET 1 AA1 2 SER A 1 MET A 2 0 SHEET 2 AA1 2 ASP A 55 ARG A 56 -1 O ARG A 56 N SER A 1 SHEET 1 AA2 5 TYR A 4 TRP A 6 0 SHEET 2 AA2 5 THR A 273 ARG A 277 -1 O TYR A 276 N SER A 5 SHEET 3 AA2 5 GLY A 264 PHE A 267 -1 N MET A 266 O CYS A 274 SHEET 4 AA2 5 THR A 136 ALA A 140 1 N THR A 136 O PHE A 267 SHEET 5 AA2 5 LEU A 159 TYR A 162 -1 O TYR A 162 N THR A 137 SHEET 1 AA3 2 VAL A 37 CYS A 39 0 SHEET 2 AA3 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AA4 3 PRO A 214 ASP A 220 0 SHEET 2 AA4 3 ASP A 319 GLU A 325 -1 O SER A 324 N MET A 215 SHEET 3 AA4 3 VAL A 309 CYS A 316 -1 N VAL A 309 O GLU A 325 SHEET 1 AA5 2 ASN A 369 LEU A 374 0 SHEET 2 AA5 2 ARG A 380 THR A 385 -1 O ARG A 381 N ALA A 373 SHEET 1 AA6 2 LEU A 443 MET A 447 0 SHEET 2 AA6 2 SER A 450 VAL A 454 -1 O TYR A 452 N PHE A 445 LINK OD1 ASP A 220 MN MN A 603 1555 1555 2.35 LINK OD1 ASP A 220 MN MN A 604 1555 1555 2.35 LINK O THR A 221 MN MN A 603 1555 1555 2.15 LINK OD2 ASP A 318 MN MN A 603 1555 1555 2.37 LINK OD1 ASP A 318 MN MN A 604 1555 1555 2.67 LINK OD1 ASP A 319 MN MN A 604 1555 1555 2.75 LINK O1B GDP A 602 MN MN A 603 1555 1555 2.70 LINK O3A GDP A 602 MN MN A 603 1555 1555 2.42 LINK O1A GDP A 602 MN MN A 604 1555 1555 2.46 CRYST1 139.313 139.313 93.140 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007178 0.004144 0.000000 0.00000 SCALE2 0.000000 0.008289 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010737 0.00000 CONECT 1726 4493 4494 CONECT 1731 4493 CONECT 2470 4494 CONECT 2471 4493 CONECT 2478 4494 CONECT 4412 4413 4414 4415 4464 CONECT 4413 4412 CONECT 4414 4412 CONECT 4415 4412 4416 CONECT 4416 4415 4417 CONECT 4417 4416 4418 4419 CONECT 4418 4417 4423 CONECT 4419 4417 4420 4421 CONECT 4420 4419 CONECT 4421 4419 4422 4423 CONECT 4422 4421 CONECT 4423 4418 4421 4424 CONECT 4424 4423 4425 4433 CONECT 4425 4424 4426 CONECT 4426 4425 4427 CONECT 4427 4426 4428 4433 CONECT 4428 4427 4429 4430 CONECT 4429 4428 CONECT 4430 4428 4431 CONECT 4431 4430 4432 CONECT 4432 4431 4433 CONECT 4433 4424 4427 4432 CONECT 4434 4435 4451 CONECT 4435 4434 4436 4437 CONECT 4436 4435 CONECT 4437 4435 4438 CONECT 4438 4437 4439 4440 CONECT 4439 4438 CONECT 4440 4438 4441 4451 CONECT 4441 4440 4442 CONECT 4442 4441 4443 4449 CONECT 4443 4442 4444 CONECT 4444 4443 4445 4446 CONECT 4445 4444 CONECT 4446 4444 4447 4448 CONECT 4447 4446 CONECT 4448 4446 4449 CONECT 4449 4442 4448 4450 CONECT 4450 4449 4451 4452 CONECT 4451 4434 4440 4450 CONECT 4452 4450 4453 CONECT 4453 4452 4454 4455 CONECT 4454 4453 CONECT 4455 4453 4456 4457 CONECT 4456 4455 CONECT 4457 4455 4458 4459 CONECT 4458 4457 CONECT 4459 4457 4460 CONECT 4460 4459 4461 CONECT 4461 4460 4462 4463 4464 CONECT 4462 4461 CONECT 4463 4461 CONECT 4464 4412 4461 CONECT 4465 4466 4467 4468 4469 CONECT 4466 4465 4493 CONECT 4467 4465 CONECT 4468 4465 CONECT 4469 4465 4470 4493 CONECT 4470 4469 4471 4472 4473 CONECT 4471 4470 4494 CONECT 4472 4470 CONECT 4473 4470 4474 CONECT 4474 4473 4475 CONECT 4475 4474 4476 4477 CONECT 4476 4475 4481 CONECT 4477 4475 4478 4479 CONECT 4478 4477 CONECT 4479 4477 4480 4481 CONECT 4480 4479 CONECT 4481 4476 4479 4482 CONECT 4482 4481 4483 4492 CONECT 4483 4482 4484 CONECT 4484 4483 4485 CONECT 4485 4484 4486 4492 CONECT 4486 4485 4487 4488 CONECT 4487 4486 CONECT 4488 4486 4489 CONECT 4489 4488 4490 4491 CONECT 4490 4489 CONECT 4491 4489 4492 CONECT 4492 4482 4485 4491 CONECT 4493 1726 1731 2471 4466 CONECT 4493 4469 CONECT 4494 1726 2470 2478 4471 MASTER 294 0 4 29 16 0 0 6 4544 2 89 44 END