HEADER VIRAL PROTEIN 15-JAN-25 9LJW TITLE STRUCTURAL INSIGHTS INTO THE POLYMERASE CATALYZED FAD-CAPPING OF TITLE 2 HEPATITIS C VIRAL RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(P*CP*GP*UP*CP*U)-3'); COMPND 3 CHAIN: T; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 7 CHAIN: A; COMPND 8 SYNONYM: NS5B,P68; COMPND 9 EC: 2.7.7.48; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: RNA (5'-R(P*GP*AP*C)-3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HEPATITIS C VIRUS GENOTYPE 2A (ISOLATE JFH-1); SOURCE 7 ORGANISM_COMMON: HCV; SOURCE 8 ORGANISM_TAXID: 356411; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS HEPATITIS C VIRUS, RNA POLYMERASE COMPLEX, FAD CAP, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.P.WANG,R.ZHAO,W.S.HU,H.N.LI,J.M.CAO,X.ZHOU,Y.XIANG REVDAT 2 20-AUG-25 9LJW 1 JRNL REVDAT 1 13-AUG-25 9LJW 0 JRNL AUTH D.P.WANG,R.ZHAO,W.S.HU,H.N.LI,J.M.CAO,X.ZHOU,Y.XIANG JRNL TITL STRUCTURAL INSIGHTS INTO POLYMERASE-CATALYZED FAD CAPPING OF JRNL TITL 2 HEPATITIS C VIRUS RNA. JRNL REF NAT COMMUN V. 16 7298 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40775214 JRNL DOI 10.1038/S41467-025-62609-W REMARK 2 REMARK 2 RESOLUTION. 3.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.4 REMARK 3 NUMBER OF REFLECTIONS : 17018 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6800 - 5.6800 0.99 3056 119 0.1314 0.1641 REMARK 3 2 5.6800 - 4.5100 1.00 2983 181 0.1638 0.2058 REMARK 3 3 4.5100 - 3.9400 1.00 2978 137 0.1681 0.2199 REMARK 3 4 3.9400 - 3.5800 0.68 1998 127 0.2351 0.3041 REMARK 3 5 3.5800 - 3.3200 0.77 2275 115 0.2578 0.3301 REMARK 3 6 3.3200 - 3.1300 0.99 2946 158 0.3119 0.3976 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4624 REMARK 3 ANGLE : 1.482 6328 REMARK 3 CHIRALITY : 0.060 713 REMARK 3 PLANARITY : 0.009 764 REMARK 3 DIHEDRAL : 18.527 1823 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LJW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 18-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUL-24 REMARK 200 TEMPERATURE (KELVIN) : 289.15 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17165 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.130 REMARK 200 RESOLUTION RANGE LOW (A) : 73.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : 11.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 100 MM BIS-TRIS REMARK 280 PROPANE/HYDROCHLORIC ACID, PH 8.5, 200 MM SODIUM MALONATE REMARK 280 DIBASIC PRECIPITANT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.08667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.54333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.81500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 15.27167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.35833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: T, A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O5' G C 1 O3B FAD C 101 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G C 1 P G C 1 O5' 0.084 REMARK 500 A C 2 C4 A C 2 C5 0.117 REMARK 500 A C 2 C5 A C 2 C6 0.086 REMARK 500 A C 2 C5 A C 2 N7 -0.046 REMARK 500 A C 2 N7 A C 2 C8 0.050 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U T 6 C6 - N1 - C2 ANGL. DEV. = -4.2 DEGREES REMARK 500 G C 1 C2' - C3' - O3' ANGL. DEV. = 11.6 DEGREES REMARK 500 G C 1 C3' - C2' - C1' ANGL. DEV. = -7.2 DEGREES REMARK 500 G C 1 O4' - C1' - N9 ANGL. DEV. = 7.1 DEGREES REMARK 500 A C 2 N1 - C2 - N3 ANGL. DEV. = -3.6 DEGREES REMARK 500 A C 2 C2 - N3 - C4 ANGL. DEV. = 9.4 DEGREES REMARK 500 A C 2 N3 - C4 - C5 ANGL. DEV. = -10.1 DEGREES REMARK 500 A C 2 C4 - C5 - C6 ANGL. DEV. = 3.1 DEGREES REMARK 500 A C 2 C4 - C5 - N7 ANGL. DEV. = -4.5 DEGREES REMARK 500 A C 2 N3 - C4 - N9 ANGL. DEV. = 8.7 DEGREES REMARK 500 C C 3 O3' - P - OP2 ANGL. DEV. = -25.6 DEGREES REMARK 500 C C 3 O5' - P - OP2 ANGL. DEV. = 27.6 DEGREES REMARK 500 C C 3 C6 - N1 - C2 ANGL. DEV. = -3.0 DEGREES REMARK 500 C C 3 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 C C 3 C5 - C6 - N1 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 14 43.87 -88.11 REMARK 500 TYR A 101 38.29 -77.90 REMARK 500 PHE A 103 155.59 174.03 REMARK 500 GLU A 128 -131.34 65.37 REMARK 500 ASP A 129 88.66 -25.38 REMARK 500 LYS A 151 47.87 -109.55 REMARK 500 ASP A 213 79.40 -170.22 REMARK 500 LEU A 260 -58.16 -126.04 REMARK 500 SER A 324 -168.81 -122.90 REMARK 500 ALA A 348 57.39 -155.60 REMARK 500 LEU A 439 13.42 -69.06 REMARK 500 ASP A 440 58.56 -160.78 REMARK 500 HIS A 475 -49.52 -135.61 REMARK 500 LEU A 544 35.16 -73.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 603 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 220 OD2 REMARK 620 2 THR A 221 O 91.0 REMARK 620 3 ASP A 318 OD2 111.3 78.2 REMARK 620 4 GDP A 601 O1B 158.6 88.5 89.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 318 OD1 REMARK 620 2 ASP A 319 OD2 118.3 REMARK 620 3 GDP A 601 O1A 87.7 139.7 REMARK 620 N 1 2 DBREF 9LJW T 2 6 PDB 9LJW 9LJW 2 6 DBREF 9LJW A 1 551 UNP Q99IB8 POLG_HCVJF 2443 2993 DBREF 9LJW C 1 3 PDB 9LJW 9LJW 1 3 SEQADV 9LJW SER A 0 UNP Q99IB8 EXPRESSION TAG SEQADV 9LJW GLY A 15 UNP Q99IB8 SER 2457 ENGINEERED MUTATION SEQADV 9LJW GLN A 86 UNP Q99IB8 GLU 2528 ENGINEERED MUTATION SEQADV 9LJW GLN A 87 UNP Q99IB8 GLU 2529 ENGINEERED MUTATION SEQADV 9LJW HIS A 223 UNP Q99IB8 CYS 2665 ENGINEERED MUTATION SEQADV 9LJW ILE A 321 UNP Q99IB8 VAL 2763 ENGINEERED MUTATION SEQADV 9LJW GLY A 444 UNP Q99IB8 ASN 2886 ENGINEERED MUTATION SEQADV 9LJW A UNP Q99IB8 PHE 2887 DELETION SEQADV 9LJW A UNP Q99IB8 GLU 2888 DELETION SEQADV 9LJW A UNP Q99IB8 MET 2889 DELETION SEQADV 9LJW A UNP Q99IB8 TYR 2890 DELETION SEQADV 9LJW A UNP Q99IB8 GLY 2891 DELETION SEQADV 9LJW A UNP Q99IB8 SER 2892 DELETION SEQADV 9LJW A UNP Q99IB8 VAL 2893 DELETION SEQADV 9LJW A UNP Q99IB8 TYR 2894 DELETION SEQADV 9LJW GLY A 445 UNP Q99IB8 SER 2895 ENGINEERED MUTATION SEQRES 1 T 5 C G U C U SEQRES 1 A 544 SER SER MET SER TYR SER TRP THR GLY ALA LEU ILE THR SEQRES 2 A 544 PRO CYS GLY PRO GLU GLU GLU LYS LEU PRO ILE ASN PRO SEQRES 3 A 544 LEU SER ASN SER LEU LEU ARG TYR HIS ASN LYS VAL TYR SEQRES 4 A 544 CYS THR THR SER LYS SER ALA SER GLN ARG ALA LYS LYS SEQRES 5 A 544 VAL THR PHE ASP ARG THR GLN VAL LEU ASP ALA HIS TYR SEQRES 6 A 544 ASP SER VAL LEU LYS ASP ILE LYS LEU ALA ALA SER LYS SEQRES 7 A 544 VAL SER ALA ARG LEU LEU THR LEU GLN GLN ALA CYS GLN SEQRES 8 A 544 LEU THR PRO PRO HIS SER ALA ARG SER LYS TYR GLY PHE SEQRES 9 A 544 GLY ALA LYS GLU VAL ARG SER LEU SER GLY ARG ALA VAL SEQRES 10 A 544 ASN HIS ILE LYS SER VAL TRP LYS ASP LEU LEU GLU ASP SEQRES 11 A 544 PRO GLN THR PRO ILE PRO THR THR ILE MET ALA LYS ASN SEQRES 12 A 544 GLU VAL PHE CYS VAL ASP PRO ALA LYS GLY GLY LYS LYS SEQRES 13 A 544 PRO ALA ARG LEU ILE VAL TYR PRO ASP LEU GLY VAL ARG SEQRES 14 A 544 VAL CYS GLU LYS MET ALA LEU TYR ASP ILE THR GLN LYS SEQRES 15 A 544 LEU PRO GLN ALA VAL MET GLY ALA SER TYR GLY PHE GLN SEQRES 16 A 544 TYR SER PRO ALA GLN ARG VAL GLU TYR LEU LEU LYS ALA SEQRES 17 A 544 TRP ALA GLU LYS LYS ASP PRO MET GLY PHE SER TYR ASP SEQRES 18 A 544 THR ARG HIS PHE ASP SER THR VAL THR GLU ARG ASP ILE SEQRES 19 A 544 ARG THR GLU GLU SER ILE TYR GLN ALA CYS SER LEU PRO SEQRES 20 A 544 GLU GLU ALA ARG THR ALA ILE HIS SER LEU THR GLU ARG SEQRES 21 A 544 LEU TYR VAL GLY GLY PRO MET PHE ASN SER LYS GLY GLN SEQRES 22 A 544 THR CYS GLY TYR ARG ARG CYS ARG ALA SER GLY VAL LEU SEQRES 23 A 544 THR THR SER MET GLY ASN THR ILE THR CYS TYR VAL LYS SEQRES 24 A 544 ALA LEU ALA ALA CYS LYS ALA ALA GLY ILE VAL ALA PRO SEQRES 25 A 544 THR MET LEU VAL CYS GLY ASP ASP LEU ILE VAL ILE SER SEQRES 26 A 544 GLU SER GLN GLY THR GLU GLU ASP GLU ARG ASN LEU ARG SEQRES 27 A 544 ALA PHE THR GLU ALA MET THR ARG TYR SER ALA PRO PRO SEQRES 28 A 544 GLY ASP PRO PRO ARG PRO GLU TYR ASP LEU GLU LEU ILE SEQRES 29 A 544 THR SER CYS SER SER ASN VAL SER VAL ALA LEU GLY PRO SEQRES 30 A 544 ARG GLY ARG ARG ARG TYR TYR LEU THR ARG ASP PRO THR SEQRES 31 A 544 THR PRO LEU ALA ARG ALA ALA TRP GLU THR VAL ARG HIS SEQRES 32 A 544 SER PRO ILE ASN SER TRP LEU GLY ASN ILE ILE GLN TYR SEQRES 33 A 544 ALA PRO THR ILE TRP VAL ARG MET VAL LEU MET THR HIS SEQRES 34 A 544 PHE PHE SER ILE LEU MET VAL GLN ASP THR LEU ASP GLN SEQRES 35 A 544 ASN LEU GLY GLY VAL ASN PRO LEU ASP LEU PRO ALA ILE SEQRES 36 A 544 ILE GLU ARG LEU HIS GLY LEU ASP ALA PHE SER MET HIS SEQRES 37 A 544 THR TYR SER HIS HIS GLU LEU THR ARG VAL ALA SER ALA SEQRES 38 A 544 LEU ARG LYS LEU GLY ALA PRO PRO LEU ARG VAL TRP LYS SEQRES 39 A 544 SER ARG ALA ARG ALA VAL ARG ALA SER LEU ILE SER ARG SEQRES 40 A 544 GLY GLY LYS ALA ALA VAL CYS GLY ARG TYR LEU PHE ASN SEQRES 41 A 544 TRP ALA VAL LYS THR LYS LEU LYS LEU THR PRO LEU PRO SEQRES 42 A 544 GLU ALA ARG LEU LEU ASP LEU SER SER TRP PHE SEQRES 1 C 3 G A C HET GDP A 601 28 HET MN A 602 1 HET MN A 603 1 HET FAD C 101 53 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 4 GDP C10 H15 N5 O11 P2 FORMUL 5 MN 2(MN 2+) FORMUL 7 FAD C27 H33 N9 O15 P2 FORMUL 8 HOH *6(H2 O) HELIX 1 AA1 TYR A 33 ASN A 35 5 3 HELIX 2 AA2 SER A 44 THR A 53 1 10 HELIX 3 AA3 ASP A 61 LYS A 77 1 17 HELIX 4 AA4 THR A 84 LEU A 91 1 8 HELIX 5 AA5 GLY A 104 SER A 110 1 7 HELIX 6 AA6 SER A 112 LEU A 127 1 16 HELIX 7 AA7 ASP A 164 GLY A 188 1 25 HELIX 8 AA8 ALA A 189 TYR A 195 5 7 HELIX 9 AA9 SER A 196 GLU A 210 1 15 HELIX 10 AB1 THR A 229 GLN A 241 1 13 HELIX 11 AB2 PRO A 246 LEU A 260 1 15 HELIX 12 AB3 THR A 286 GLY A 307 1 22 HELIX 13 AB4 GLY A 328 TYR A 346 1 19 HELIX 14 AB5 ASP A 359 ILE A 363 5 5 HELIX 15 AB6 PRO A 388 ALA A 396 1 9 HELIX 16 AB7 PRO A 404 TYR A 415 1 12 HELIX 17 AB8 THR A 418 VAL A 424 1 7 HELIX 18 AB9 VAL A 424 GLN A 436 1 13 HELIX 19 AC1 ASN A 455 LEU A 457 5 3 HELIX 20 AC2 ASP A 458 GLY A 468 1 11 HELIX 21 AC3 LEU A 469 SER A 473 5 5 HELIX 22 AC4 SER A 478 GLY A 493 1 16 HELIX 23 AC5 PRO A 496 GLY A 515 1 20 HELIX 24 AC6 GLY A 516 PHE A 526 1 11 HELIX 25 AC7 ASN A 527 VAL A 530 5 4 HELIX 26 AC8 LEU A 539 ARG A 543 5 5 SHEET 1 AA1 2 SER A 1 MET A 2 0 SHEET 2 AA1 2 ASP A 55 ARG A 56 -1 O ARG A 56 N SER A 1 SHEET 1 AA2 3 TYR A 4 TRP A 6 0 SHEET 2 AA2 3 THR A 273 ARG A 277 -1 O TYR A 276 N SER A 5 SHEET 3 AA2 3 GLY A 264 PHE A 267 -1 N MET A 266 O CYS A 274 SHEET 1 AA3 2 VAL A 37 CYS A 39 0 SHEET 2 AA3 2 VAL A 144 CYS A 146 -1 O PHE A 145 N TYR A 38 SHEET 1 AA4 2 THR A 137 ALA A 140 0 SHEET 2 AA4 2 LEU A 159 TYR A 162 -1 O ILE A 160 N MET A 139 SHEET 1 AA5 3 PRO A 214 ASP A 220 0 SHEET 2 AA5 3 ASP A 319 GLU A 325 -1 O SER A 324 N MET A 215 SHEET 3 AA5 3 VAL A 309 CYS A 316 -1 N CYS A 316 O ASP A 319 SHEET 1 AA6 2 ASN A 369 LEU A 374 0 SHEET 2 AA6 2 ARG A 380 THR A 385 -1 O ARG A 381 N ALA A 373 LINK P G C 1 O3B FAD C 101 1555 1555 1.56 LINK OD2 ASP A 220 MN MN A 603 1555 1555 2.27 LINK O THR A 221 MN MN A 603 1555 1555 2.34 LINK OD1 ASP A 318 MN MN A 602 1555 1555 2.42 LINK OD2 ASP A 318 MN MN A 603 1555 1555 2.62 LINK OD2 ASP A 319 MN MN A 602 1555 1555 2.20 LINK O1A GDP A 601 MN MN A 602 1555 1555 2.28 LINK O1B GDP A 601 MN MN A 603 1555 1555 2.34 CRYST1 142.606 142.606 91.630 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007012 0.004049 0.000000 0.00000 SCALE2 0.000000 0.008097 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010913 0.00000 CONECT 1831 4453 CONECT 1835 4453 CONECT 2566 4452 CONECT 2567 4453 CONECT 2575 4452 CONECT 4358 4462 CONECT 4424 4425 4426 4427 4428 CONECT 4425 4424 4453 CONECT 4426 4424 CONECT 4427 4424 CONECT 4428 4424 4429 CONECT 4429 4428 4430 4431 4432 CONECT 4430 4429 4452 CONECT 4431 4429 CONECT 4432 4429 4433 CONECT 4433 4432 4434 CONECT 4434 4433 4435 4436 CONECT 4435 4434 4440 CONECT 4436 4434 4437 4438 CONECT 4437 4436 CONECT 4438 4436 4439 4440 CONECT 4439 4438 CONECT 4440 4435 4438 4441 CONECT 4441 4440 4442 4451 CONECT 4442 4441 4443 CONECT 4443 4442 4444 CONECT 4444 4443 4445 4451 CONECT 4445 4444 4446 4447 CONECT 4446 4445 CONECT 4447 4445 4448 CONECT 4448 4447 4449 4450 CONECT 4449 4448 CONECT 4450 4448 4451 CONECT 4451 4441 4444 4450 CONECT 4452 2566 2575 4430 CONECT 4453 1831 1835 2567 4425 CONECT 4454 4455 4456 4457 4506 CONECT 4455 4454 CONECT 4456 4454 CONECT 4457 4454 4458 CONECT 4458 4457 4459 CONECT 4459 4458 4460 4461 CONECT 4460 4459 4465 CONECT 4461 4459 4462 4463 CONECT 4462 4358 4461 CONECT 4463 4461 4464 4465 CONECT 4464 4463 CONECT 4465 4460 4463 4466 CONECT 4466 4465 4467 4475 CONECT 4467 4466 4468 CONECT 4468 4467 4469 CONECT 4469 4468 4470 4475 CONECT 4470 4469 4471 4472 CONECT 4471 4470 CONECT 4472 4470 4473 CONECT 4473 4472 4474 CONECT 4474 4473 4475 CONECT 4475 4466 4469 4474 CONECT 4476 4477 4493 CONECT 4477 4476 4478 4479 CONECT 4478 4477 CONECT 4479 4477 4480 CONECT 4480 4479 4481 4482 CONECT 4481 4480 CONECT 4482 4480 4483 4493 CONECT 4483 4482 4484 CONECT 4484 4483 4485 4491 CONECT 4485 4484 4486 CONECT 4486 4485 4487 4488 CONECT 4487 4486 CONECT 4488 4486 4489 4490 CONECT 4489 4488 CONECT 4490 4488 4491 CONECT 4491 4484 4490 4492 CONECT 4492 4491 4493 4494 CONECT 4493 4476 4482 4492 CONECT 4494 4492 4495 CONECT 4495 4494 4496 4497 CONECT 4496 4495 CONECT 4497 4495 4498 4499 CONECT 4498 4497 CONECT 4499 4497 4500 4501 CONECT 4500 4499 CONECT 4501 4499 4502 CONECT 4502 4501 4503 CONECT 4503 4502 4504 4505 4506 CONECT 4504 4503 CONECT 4505 4503 CONECT 4506 4454 4503 MASTER 325 0 4 26 14 0 0 6 4509 3 89 44 END