HEADER TRANSPORT PROTEIN 17-JAN-25 9LL0 TITLE CRYO-EM STRUCTURE OF G6PT1 IN COMPLEX WITH GLUCOSE-6-PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-6-PHOSPHATE EXCHANGER SLC37A4; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUCOSE-5-PHOSPHATE TRANSPORTER,GLUCOSE-6-PHOSPHATE COMPND 5 TRANSLOCASE,SOLUTE CARRIER FAMILY 37 MEMBER 4,TRANSFORMATION-RELATED COMPND 6 GENE 19 PROTEIN,TRG-19; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SLC37A4, G6PT, G6PT1, PRO0685, TRG19; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PROTEIN STRUCTURE, STRUCTURAL PROTEIN, TRANSPORT PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.ZHAO,Q.CHEN REVDAT 1 31-DEC-25 9LL0 0 JRNL AUTH Y.ZHAO,Q.CHEN JRNL TITL TRANSPORT AND INHIBITION MECHANISMS OF G6PT1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.280 REMARK 3 NUMBER OF PARTICLES : 58851 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9LL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055897. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF G6PT1 IN REMARK 245 COMPLEX WITH GLUCOSE-6-PHOSPHATE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : OTHER REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 199 REMARK 465 ASP A 200 REMARK 465 PRO A 201 REMARK 465 MET A 202 REMARK 465 PRO A 203 REMARK 465 SER A 204 REMARK 465 GLU A 205 REMARK 465 GLY A 206 REMARK 465 LYS A 207 REMARK 465 LYS A 208 REMARK 465 GLY A 209 REMARK 465 SER A 210 REMARK 465 LEU A 211 REMARK 465 LYS A 212 REMARK 465 GLU A 213 REMARK 465 LYS A 290 REMARK 465 ALA A 291 REMARK 465 GLY A 292 REMARK 465 LEU A 293 REMARK 465 SER A 294 REMARK 465 ASN A 295 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 8 -16.38 73.34 REMARK 500 ALA A 76 -4.57 68.00 REMARK 500 PRO A 131 0.40 -69.14 REMARK 500 ALA A 160 5.13 -69.14 REMARK 500 ALA A 192 25.75 -142.74 REMARK 500 PRO A 224 47.70 -78.94 REMARK 500 GLU A 254 -114.15 53.50 REMARK 500 ALA A 287 -111.63 55.39 REMARK 500 PRO A 299 43.78 -82.79 REMARK 500 SER A 392 170.75 179.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-63190 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF G6PT1 IN COMPLEX WITH GLUCOSE-6-PHOSPHATE DBREF 9LL0 A 5 424 UNP O43826 G6PT1_HUMAN 5 424 SEQRES 1 A 420 GLY TYR GLY TYR TYR ARG THR VAL ILE PHE SER ALA MET SEQRES 2 A 420 PHE GLY GLY TYR SER LEU TYR TYR PHE ASN ARG LYS THR SEQRES 3 A 420 PHE SER PHE VAL MET PRO SER LEU VAL GLU GLU ILE PRO SEQRES 4 A 420 LEU ASP LYS ASP ASP LEU GLY PHE ILE THR SER SER GLN SEQRES 5 A 420 SER ALA ALA TYR ALA ILE SER LYS PHE VAL SER GLY VAL SEQRES 6 A 420 LEU SER ASP GLN MET SER ALA ARG TRP LEU PHE SER SER SEQRES 7 A 420 GLY LEU LEU LEU VAL GLY LEU VAL ASN ILE PHE PHE ALA SEQRES 8 A 420 TRP SER SER THR VAL PRO VAL PHE ALA ALA LEU TRP PHE SEQRES 9 A 420 LEU ASN GLY LEU ALA GLN GLY LEU GLY TRP PRO PRO CYS SEQRES 10 A 420 GLY LYS VAL LEU ARG LYS TRP PHE GLU PRO SER GLN PHE SEQRES 11 A 420 GLY THR TRP TRP ALA ILE LEU SER THR SER MET ASN LEU SEQRES 12 A 420 ALA GLY GLY LEU GLY PRO ILE LEU ALA THR ILE LEU ALA SEQRES 13 A 420 GLN SER TYR SER TRP ARG SER THR LEU ALA LEU SER GLY SEQRES 14 A 420 ALA LEU CYS VAL VAL VAL SER PHE LEU CYS LEU LEU LEU SEQRES 15 A 420 ILE HIS ASN GLU PRO ALA ASP VAL GLY LEU ARG ASN LEU SEQRES 16 A 420 ASP PRO MET PRO SER GLU GLY LYS LYS GLY SER LEU LYS SEQRES 17 A 420 GLU GLU SER THR LEU GLN GLU LEU LEU LEU SER PRO TYR SEQRES 18 A 420 LEU TRP VAL LEU SER THR GLY TYR LEU VAL VAL PHE GLY SEQRES 19 A 420 VAL LYS THR CYS CYS THR ASP TRP GLY GLN PHE PHE LEU SEQRES 20 A 420 ILE GLN GLU LYS GLY GLN SER ALA LEU VAL GLY SER SER SEQRES 21 A 420 TYR MET SER ALA LEU GLU VAL GLY GLY LEU VAL GLY SER SEQRES 22 A 420 ILE ALA ALA GLY TYR LEU SER ASP ARG ALA MET ALA LYS SEQRES 23 A 420 ALA GLY LEU SER ASN TYR GLY ASN PRO ARG HIS GLY LEU SEQRES 24 A 420 LEU LEU PHE MET MET ALA GLY MET THR VAL SER MET TYR SEQRES 25 A 420 LEU PHE ARG VAL THR VAL THR SER ASP SER PRO LYS LEU SEQRES 26 A 420 TRP ILE LEU VAL LEU GLY ALA VAL PHE GLY PHE SER SER SEQRES 27 A 420 TYR GLY PRO ILE ALA LEU PHE GLY VAL ILE ALA ASN GLU SEQRES 28 A 420 SER ALA PRO PRO ASN LEU CYS GLY THR SER HIS ALA ILE SEQRES 29 A 420 VAL GLY LEU MET ALA ASN VAL GLY GLY PHE LEU ALA GLY SEQRES 30 A 420 LEU PRO PHE SER THR ILE ALA LYS HIS TYR SER TRP SER SEQRES 31 A 420 THR ALA PHE TRP VAL ALA GLU VAL ILE CYS ALA ALA SER SEQRES 32 A 420 THR ALA ALA PHE PHE LEU LEU ARG ASN ILE ARG THR LYS SEQRES 33 A 420 MET GLY ARG VAL HET BG6 A 501 16 HETNAM BG6 6-O-PHOSPHONO-BETA-D-GLUCOPYRANOSE HETSYN BG6 BETA-D-GLUCOSE-6-PHOSPHATE; 6-O-PHOSPHONO-BETA-D- HETSYN 2 BG6 GLUCOSE; 6-O-PHOSPHONO-D-GLUCOSE; 6-O-PHOSPHONO- HETSYN 3 BG6 GLUCOSE FORMUL 2 BG6 C6 H13 O9 P HELIX 1 AA1 TYR A 8 ILE A 42 1 35 HELIX 2 AA2 ASP A 47 LEU A 70 1 24 HELIX 3 AA3 ARG A 77 TRP A 96 1 20 HELIX 4 AA4 THR A 99 GLN A 114 1 16 HELIX 5 AA5 GLY A 115 GLY A 117 5 3 HELIX 6 AA6 TRP A 118 PRO A 120 5 3 HELIX 7 AA7 CYS A 121 PHE A 129 1 9 HELIX 8 AA8 GLN A 133 SER A 142 1 10 HELIX 9 AA9 THR A 143 GLY A 150 1 8 HELIX 10 AB1 LEU A 151 ALA A 160 1 10 HELIX 11 AB2 SER A 164 LEU A 185 1 22 HELIX 12 AB3 LEU A 217 LEU A 222 1 6 HELIX 13 AB4 TYR A 225 GLN A 253 1 29 HELIX 14 AB5 SER A 258 ARG A 286 1 29 HELIX 15 AB6 ARG A 300 THR A 321 1 22 HELIX 16 AB7 PRO A 327 SER A 356 1 30 HELIX 17 AB8 GLY A 363 ALA A 380 1 18 HELIX 18 AB9 GLY A 381 TYR A 391 1 11 HELIX 19 AC1 SER A 392 LEU A 414 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 3054 VAL A 424 HETATM 3055 C1 BG6 A 501 116.866 110.357 110.509 1.00 94.58 C HETATM 3056 C2 BG6 A 501 117.828 109.517 111.343 1.00 94.62 C HETATM 3057 O1 BG6 A 501 115.863 110.867 111.333 1.00 92.57 O HETATM 3058 O5 BG6 A 501 116.245 109.579 109.533 1.00 94.70 O HETATM 3059 C3 BG6 A 501 118.876 108.969 110.388 1.00 96.53 C HETATM 3060 O2 BG6 A 501 118.429 110.300 112.333 1.00 90.99 O HETATM 3061 C4 BG6 A 501 118.110 108.083 109.430 1.00 95.33 C HETATM 3062 O3 BG6 A 501 119.844 108.211 111.049 1.00 97.28 O HETATM 3063 C5 BG6 A 501 117.137 108.958 108.655 1.00 92.77 C HETATM 3064 O4 BG6 A 501 119.012 107.477 108.562 1.00 92.80 O HETATM 3065 C6 BG6 A 501 116.352 108.065 107.707 1.00 91.69 C HETATM 3066 O6 BG6 A 501 114.982 108.292 107.868 1.00 94.31 O HETATM 3067 P BG6 A 501 114.048 107.084 108.478 1.00106.48 P HETATM 3068 O1P BG6 A 501 113.670 107.351 109.911 1.00 96.50 O HETATM 3069 O2P BG6 A 501 112.788 106.967 107.663 1.00 92.74 O HETATM 3070 O3P BG6 A 501 114.822 105.800 108.406 1.00100.57 O CONECT 3055 3056 3057 3058 CONECT 3056 3055 3059 3060 CONECT 3057 3055 CONECT 3058 3055 3063 CONECT 3059 3056 3061 3062 CONECT 3060 3056 CONECT 3061 3059 3063 3064 CONECT 3062 3059 CONECT 3063 3058 3061 3065 CONECT 3064 3061 CONECT 3065 3063 3066 CONECT 3066 3065 3067 CONECT 3067 3066 3068 3069 3070 CONECT 3068 3067 CONECT 3069 3067 CONECT 3070 3067 MASTER 154 0 1 19 0 0 0 6 3069 1 16 33 END