HEADER METAL BINDING PROTEIN 17-JAN-25 9LL4 TITLE CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI COPPER RESISTANCE TITLE 2 DETERMINANT CRDA IN COMPLEX WITH SILVER IONS IN SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COPPER RESISTANCE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 210; SOURCE 4 GENE: B0X44_01495, B0X54_06630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CRDA, COPPER ION, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.W.KI,H.B.OH,H.Y.CHO,W.S.SONG,S.I.YOON REVDAT 1 19-NOV-25 9LL4 0 JRNL AUTH D.U.KI,H.B.OH,H.Y.CHO,W.S.SONG,S.I.YOON JRNL TITL STRUCTURAL BASIS OF CU(I) ION RECOGNITION BY THE JRNL TITL 2 HELICOBACTER PYLORI COPPER RESISTANCE DETERMINANT CRDA. JRNL REF FEBS J. 2025 JRNL REFN ISSN 1742-464X JRNL PMID 41147750 JRNL DOI 10.1111/FEBS.70305 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 17413 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8400 - 3.5800 0.95 2828 130 0.1763 0.2241 REMARK 3 2 3.5800 - 2.8400 0.98 2814 132 0.1983 0.2456 REMARK 3 3 2.8400 - 2.4800 0.98 2787 138 0.2310 0.2788 REMARK 3 4 2.4800 - 2.2600 0.97 2794 122 0.2207 0.2421 REMARK 3 5 2.2600 - 2.0900 0.97 2745 150 0.2233 0.3064 REMARK 3 6 2.0900 - 1.9700 0.94 2628 145 0.2159 0.2517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.207 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.689 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.58 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1612 REMARK 3 ANGLE : 0.735 2185 REMARK 3 CHIRALITY : 0.050 254 REMARK 3 PLANARITY : 0.005 279 REMARK 3 DIHEDRAL : 18.274 993 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9695 10.0357 -27.5139 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.1692 REMARK 3 T33: 0.1696 T12: -0.0030 REMARK 3 T13: 0.0496 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 6.3638 L22: 5.1608 REMARK 3 L33: 5.9817 L12: -1.5548 REMARK 3 L13: -1.8614 L23: 5.5433 REMARK 3 S TENSOR REMARK 3 S11: 0.1132 S12: 0.0618 S13: 0.0230 REMARK 3 S21: -0.2564 S22: -0.2575 S23: 0.1752 REMARK 3 S31: -0.1604 S32: -0.3053 S33: 0.1499 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7066 11.5146 -16.4086 REMARK 3 T TENSOR REMARK 3 T11: 0.1535 T22: 0.2271 REMARK 3 T33: 0.1900 T12: -0.0061 REMARK 3 T13: 0.0661 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 5.0636 L22: 7.2391 REMARK 3 L33: 6.8356 L12: 2.4513 REMARK 3 L13: 3.0929 L23: 3.1699 REMARK 3 S TENSOR REMARK 3 S11: 0.2219 S12: -0.3282 S13: 0.1705 REMARK 3 S21: 0.3002 S22: 0.1098 S23: -0.2066 REMARK 3 S31: 0.0457 S32: -0.0795 S33: -0.2408 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.6841 1.6773 -24.8389 REMARK 3 T TENSOR REMARK 3 T11: 0.2033 T22: 0.2347 REMARK 3 T33: 0.2011 T12: -0.0864 REMARK 3 T13: 0.0540 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 1.5049 L22: 2.1728 REMARK 3 L33: 4.0681 L12: 0.1622 REMARK 3 L13: -1.0100 L23: 2.3807 REMARK 3 S TENSOR REMARK 3 S11: -0.2709 S12: 0.7834 S13: -0.1929 REMARK 3 S21: -0.1611 S22: 0.0609 S23: 0.1301 REMARK 3 S31: -0.1292 S32: -0.0048 S33: 0.1345 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 70 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1095 6.0040 -7.3935 REMARK 3 T TENSOR REMARK 3 T11: 0.2217 T22: 0.3538 REMARK 3 T33: 0.3161 T12: 0.0449 REMARK 3 T13: -0.0013 T23: 0.0200 REMARK 3 L TENSOR REMARK 3 L11: 9.5728 L22: 8.7435 REMARK 3 L33: 9.6032 L12: 9.1426 REMARK 3 L13: 8.6161 L23: 8.1189 REMARK 3 S TENSOR REMARK 3 S11: 0.4433 S12: 0.8986 S13: -0.5978 REMARK 3 S21: 0.3600 S22: 0.3441 S23: -0.5062 REMARK 3 S31: 0.0504 S32: 0.8440 S33: -0.8044 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8988 1.1679 -11.2650 REMARK 3 T TENSOR REMARK 3 T11: 0.3717 T22: 0.2854 REMARK 3 T33: 0.3560 T12: -0.1079 REMARK 3 T13: 0.0849 T23: 0.0886 REMARK 3 L TENSOR REMARK 3 L11: 4.8472 L22: 1.3909 REMARK 3 L33: 6.2823 L12: 1.2362 REMARK 3 L13: 5.4333 L23: 1.3785 REMARK 3 S TENSOR REMARK 3 S11: 0.6991 S12: -0.7716 S13: -0.3306 REMARK 3 S21: 0.1454 S22: -0.2657 S23: -0.2973 REMARK 3 S31: 0.8916 S32: -0.6821 S33: -0.2807 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4578 5.7346 -15.8738 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.2097 REMARK 3 T33: 0.1629 T12: -0.0323 REMARK 3 T13: 0.0530 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 6.4475 L22: 5.1899 REMARK 3 L33: 8.7756 L12: 4.9381 REMARK 3 L13: 5.8893 L23: 5.4302 REMARK 3 S TENSOR REMARK 3 S11: 0.0655 S12: -0.3155 S13: 0.1070 REMARK 3 S21: 0.1232 S22: -0.2887 S23: 0.2088 REMARK 3 S31: 0.1795 S32: -0.7672 S33: 0.2519 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0254 -0.1689 -24.1909 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.1645 REMARK 3 T33: 0.2507 T12: -0.0260 REMARK 3 T13: 0.0260 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 8.1839 L22: 7.2103 REMARK 3 L33: 6.4097 L12: 6.9867 REMARK 3 L13: 7.1218 L23: 6.6070 REMARK 3 S TENSOR REMARK 3 S11: 0.1959 S12: 0.2318 S13: -0.7855 REMARK 3 S21: -0.0036 S22: 0.1385 S23: -0.3770 REMARK 3 S31: 0.4184 S32: 0.2117 S33: -0.3654 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 116 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9312 5.8720 -23.0199 REMARK 3 T TENSOR REMARK 3 T11: 0.2418 T22: 0.1378 REMARK 3 T33: 0.2207 T12: 0.0051 REMARK 3 T13: 0.0088 T23: 0.0270 REMARK 3 L TENSOR REMARK 3 L11: 4.9827 L22: 4.7469 REMARK 3 L33: 3.5820 L12: 4.7536 REMARK 3 L13: 4.1731 L23: 4.0617 REMARK 3 S TENSOR REMARK 3 S11: -0.0524 S12: 0.0072 S13: -0.3627 REMARK 3 S21: 0.0686 S22: 0.1849 S23: -0.6585 REMARK 3 S31: -0.0930 S32: 0.1518 S33: -0.1793 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 20 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8612 20.8487 -3.1114 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.1536 REMARK 3 T33: 0.1752 T12: -0.0171 REMARK 3 T13: 0.0015 T23: -0.0128 REMARK 3 L TENSOR REMARK 3 L11: 6.9292 L22: 4.6272 REMARK 3 L33: 6.4982 L12: 0.5381 REMARK 3 L13: 2.6086 L23: -1.6321 REMARK 3 S TENSOR REMARK 3 S11: 0.2400 S12: -0.2656 S13: -0.4516 REMARK 3 S21: 0.0823 S22: -0.0690 S23: 0.0743 REMARK 3 S31: 0.3560 S32: -0.1308 S33: -0.1803 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 54 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3668 22.5581 -9.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.2164 T22: 0.2588 REMARK 3 T33: 0.3063 T12: 0.0376 REMARK 3 T13: 0.0376 T23: -0.0363 REMARK 3 L TENSOR REMARK 3 L11: 3.0973 L22: 1.8212 REMARK 3 L33: 5.3305 L12: 1.8369 REMARK 3 L13: 3.3974 L23: 0.9407 REMARK 3 S TENSOR REMARK 3 S11: -0.0377 S12: -0.1363 S13: -0.1708 REMARK 3 S21: -0.2119 S22: 0.1409 S23: -0.2103 REMARK 3 S31: -0.0066 S32: 0.1911 S33: -0.1732 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 70 THROUGH 89 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5720 22.1440 -16.2067 REMARK 3 T TENSOR REMARK 3 T11: 0.2620 T22: 0.2114 REMARK 3 T33: 0.2552 T12: 0.0012 REMARK 3 T13: 0.0195 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 6.4623 L22: 8.2703 REMARK 3 L33: 7.4965 L12: 7.2497 REMARK 3 L13: 5.7211 L23: 7.1909 REMARK 3 S TENSOR REMARK 3 S11: -0.4988 S12: 0.4549 S13: -0.0447 REMARK 3 S21: -0.5134 S22: 0.5496 S23: -0.1100 REMARK 3 S31: -0.4145 S32: 0.1018 S33: -0.0056 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 90 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0275 26.3291 -10.4473 REMARK 3 T TENSOR REMARK 3 T11: 0.1851 T22: 0.2105 REMARK 3 T33: 0.2276 T12: 0.0247 REMARK 3 T13: 0.0131 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 3.9332 L22: 5.1685 REMARK 3 L33: 4.7345 L12: 3.4840 REMARK 3 L13: 3.7403 L23: 1.7630 REMARK 3 S TENSOR REMARK 3 S11: -0.1968 S12: 0.1033 S13: 0.6032 REMARK 3 S21: -0.2692 S22: -0.0099 S23: 0.6367 REMARK 3 S31: -0.3347 S32: -0.2663 S33: 0.2075 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.1514 18.0469 -11.3083 REMARK 3 T TENSOR REMARK 3 T11: 0.1545 T22: 0.2223 REMARK 3 T33: 0.2510 T12: 0.0082 REMARK 3 T13: -0.0128 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 3.9272 L22: 3.0005 REMARK 3 L33: 2.0919 L12: 3.3968 REMARK 3 L13: 1.4942 L23: 1.0597 REMARK 3 S TENSOR REMARK 3 S11: -0.1054 S12: 0.1471 S13: -0.2600 REMARK 3 S21: 0.0737 S22: 0.3096 S23: -0.2793 REMARK 3 S31: 0.0815 S32: 0.3547 S33: -0.1869 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 20 THROUGH 27 OR REMARK 3 (RESID 28 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 30 REMARK 3 THROUGH 53 OR (RESID 54 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 55 THROUGH 58 OR (RESID 59 REMARK 3 THROUGH 61 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 62 REMARK 3 THROUGH 71 OR RESID 73 THROUGH 78 OR REMARK 3 (RESID 79 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 80 REMARK 3 THROUGH 87 OR RESID 89 THROUGH 111 OR REMARK 3 (RESID 112 THROUGH 113 AND (NAME N OR REMARK 3 NAME CA OR NAME C OR NAME O OR NAME CB )) REMARK 3 OR RESID 114 THROUGH 202)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 20 THROUGH 25 OR REMARK 3 (RESID 26 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG )) OR REMARK 3 RESID 27 THROUGH 28 OR RESID 30 OR (RESID REMARK 3 31 AND (NAME N OR NAME CA OR NAME C OR REMARK 3 NAME O OR NAME CB )) OR RESID 32 OR REMARK 3 (RESID 33 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB OR NAME CG OR NAME REMARK 3 CD )) OR RESID 34 THROUGH 63 OR (RESID 64 REMARK 3 AND (NAME N OR NAME CA OR NAME C OR NAME REMARK 3 O OR NAME CB OR NAME CG OR NAME CD )) OR REMARK 3 RESID 65 THROUGH 71 OR RESID 73 THROUGH REMARK 3 87 OR RESID 89 THROUGH 202)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17430 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, CITRIC ACID, PH 4.2, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 19.51300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 16 REMARK 465 ALA A 17 REMARK 465 LYS A 18 REMARK 465 ASP A 19 REMARK 465 SER B 16 REMARK 465 ALA B 17 REMARK 465 LYS B 18 REMARK 465 ASP B 19 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CD CE NZ REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 33 CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 60 CD CE NZ REMARK 470 ARG A 64 NE CZ NH1 NH2 REMARK 470 GLN A 83 CG CD OE1 NE2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LYS A 94 CE NZ REMARK 470 LYS A 112 CD CE NZ REMARK 470 ASN B 28 CG OD1 ND2 REMARK 470 LYS B 54 CG CD CE NZ REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 GLN B 83 CG CD OE1 NE2 REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS B 94 CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 GLU B 113 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 28 -126.39 54.35 REMARK 500 ASN B 28 -125.45 55.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 201 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 69 SD REMARK 620 2 MET A 75 SD 109.6 REMARK 620 3 MET A 78 SD 122.5 116.2 REMARK 620 4 MET A 99 SD 126.1 89.8 87.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 202 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 72 SD REMARK 620 2 MET A 75 SD 127.6 REMARK 620 3 ASP B 124 OD2 114.0 118.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 201 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 69 SD REMARK 620 2 MET B 75 SD 109.8 REMARK 620 3 MET B 78 SD 121.9 118.1 REMARK 620 4 MET B 99 SD 104.2 105.0 93.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 202 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 72 SD REMARK 620 2 MET B 75 SD 122.9 REMARK 620 N 1 DBREF1 9LL4 A 21 125 UNP A0A2A6UQS9_HELPX DBREF2 9LL4 A A0A2A6UQS9 21 125 DBREF1 9LL4 B 21 125 UNP A0A2A6UQS9_HELPX DBREF2 9LL4 B A0A2A6UQS9 21 125 SEQADV 9LL4 SER A 16 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 ALA A 17 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 LYS A 18 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 ASP A 19 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 PRO A 20 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 GLU A 115 UNP A0A2A6UQS LYS 115 CONFLICT SEQADV 9LL4 SER B 16 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 ALA B 17 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 LYS B 18 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 ASP B 19 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 PRO B 20 UNP A0A2A6UQS EXPRESSION TAG SEQADV 9LL4 GLU B 115 UNP A0A2A6UQS LYS 115 CONFLICT SEQRES 1 A 110 SER ALA LYS ASP PRO TRP GLU GLN THR LEU LYS ALA ASN SEQRES 2 A 110 ASP LEU GLU VAL LYS ILE LYS SER VAL GLY ASN PRO ILE SEQRES 3 A 110 LYS GLY ASP ASN THR PHE VAL LEU SER PRO THR LEU LYS SEQRES 4 A 110 GLY LYS ALA LEU GLU LYS ALA ILE VAL ARG VAL GLN PHE SEQRES 5 A 110 MET MET PRO GLU MET PRO GLY MET PRO ALA MET LYS GLU SEQRES 6 A 110 MET ALA GLN VAL SER GLU LYS ASN GLY LEU TYR GLU ALA SEQRES 7 A 110 LYS THR ASN LEU SER MET ASN GLY THR TRP GLN VAL ARG SEQRES 8 A 110 VAL ASP ILE LYS SER LYS GLU GLY GLU VAL TYR ARG ALA SEQRES 9 A 110 LYS THR SER LEU ASP LEU SEQRES 1 B 110 SER ALA LYS ASP PRO TRP GLU GLN THR LEU LYS ALA ASN SEQRES 2 B 110 ASP LEU GLU VAL LYS ILE LYS SER VAL GLY ASN PRO ILE SEQRES 3 B 110 LYS GLY ASP ASN THR PHE VAL LEU SER PRO THR LEU LYS SEQRES 4 B 110 GLY LYS ALA LEU GLU LYS ALA ILE VAL ARG VAL GLN PHE SEQRES 5 B 110 MET MET PRO GLU MET PRO GLY MET PRO ALA MET LYS GLU SEQRES 6 B 110 MET ALA GLN VAL SER GLU LYS ASN GLY LEU TYR GLU ALA SEQRES 7 B 110 LYS THR ASN LEU SER MET ASN GLY THR TRP GLN VAL ARG SEQRES 8 B 110 VAL ASP ILE LYS SER LYS GLU GLY GLU VAL TYR ARG ALA SEQRES 9 B 110 LYS THR SER LEU ASP LEU HET AG A 201 1 HET AG A 202 1 HET AG B 201 1 HET AG B 202 1 HET SO4 B 203 5 HETNAM AG SILVER ION HETNAM SO4 SULFATE ION FORMUL 3 AG 4(AG 1+) FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *46(H2 O) SHEET 1 AA1 4 GLU A 22 ALA A 27 0 SHEET 2 AA1 4 LEU A 30 SER A 36 -1 O LEU A 30 N ALA A 27 SHEET 3 AA1 4 GLY A 43 LEU A 53 -1 O VAL A 48 N LYS A 35 SHEET 4 AA1 4 LYS A 56 ALA A 57 -1 O LYS A 56 N LEU A 53 SHEET 1 AA2 5 GLU A 22 ALA A 27 0 SHEET 2 AA2 5 LEU A 30 SER A 36 -1 O LEU A 30 N ALA A 27 SHEET 3 AA2 5 GLY A 43 LEU A 53 -1 O VAL A 48 N LYS A 35 SHEET 4 AA2 5 LEU A 90 LEU A 97 -1 O ALA A 93 N PHE A 47 SHEET 5 AA2 5 GLN A 83 LYS A 87 -1 N LYS A 87 O LEU A 90 SHEET 1 AA3 4 MET A 78 MET A 81 0 SHEET 2 AA3 4 ILE A 62 MET A 69 -1 N PHE A 67 O GLU A 80 SHEET 3 AA3 4 THR A 102 LYS A 110 -1 O GLN A 104 N MET A 68 SHEET 4 AA3 4 VAL A 116 ASP A 124 -1 O ALA A 119 N VAL A 107 SHEET 1 AA4 4 GLU B 22 ALA B 27 0 SHEET 2 AA4 4 LEU B 30 SER B 36 -1 O VAL B 32 N LEU B 25 SHEET 3 AA4 4 GLY B 43 LEU B 53 -1 O THR B 52 N GLU B 31 SHEET 4 AA4 4 LYS B 56 ALA B 57 -1 O LYS B 56 N LEU B 53 SHEET 1 AA5 5 GLU B 22 ALA B 27 0 SHEET 2 AA5 5 LEU B 30 SER B 36 -1 O VAL B 32 N LEU B 25 SHEET 3 AA5 5 GLY B 43 LEU B 53 -1 O THR B 52 N GLU B 31 SHEET 4 AA5 5 LEU B 90 LEU B 97 -1 O ALA B 93 N PHE B 47 SHEET 5 AA5 5 GLN B 83 LYS B 87 -1 N SER B 85 O GLU B 92 SHEET 1 AA6 4 MET B 78 MET B 81 0 SHEET 2 AA6 4 ILE B 62 MET B 69 -1 N PHE B 67 O GLU B 80 SHEET 3 AA6 4 THR B 102 LYS B 110 -1 O GLN B 104 N MET B 68 SHEET 4 AA6 4 VAL B 116 ASP B 124 -1 O ALA B 119 N VAL B 107 LINK SD MET A 69 AG AG A 201 1555 1555 2.58 LINK SD MET A 72 AG AG A 202 1555 1555 2.39 LINK SD MET A 75 AG AG A 201 1555 1555 2.49 LINK SD MET A 75 AG AG A 202 1555 1555 2.66 LINK SD MET A 78 AG AG A 201 1555 1555 2.69 LINK SD MET A 99 AG AG A 201 1555 1555 2.55 LINK AG AG A 202 OD2 ASP B 124 1555 1555 2.32 LINK SD MET B 69 AG AG B 201 1555 1555 2.48 LINK SD MET B 72 AG AG B 202 1555 1555 2.58 LINK SD MET B 75 AG AG B 201 1555 1555 2.66 LINK SD MET B 75 AG AG B 202 1555 1555 2.56 LINK SD MET B 78 AG AG B 201 1555 1555 2.51 LINK SD MET B 99 AG AG B 201 1555 1555 2.48 CRYST1 51.229 39.026 65.099 90.00 102.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019520 0.000000 0.004188 0.00000 SCALE2 0.000000 0.025624 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015711 0.00000 CONECT 370 1585 CONECT 394 1586 CONECT 413 1585 1586 CONECT 433 1585 CONECT 586 1585 CONECT 1167 1587 CONECT 1191 1588 CONECT 1210 1587 1588 CONECT 1230 1587 CONECT 1379 1587 CONECT 1574 1586 CONECT 1585 370 413 433 586 CONECT 1586 394 413 1574 CONECT 1587 1167 1210 1230 1379 CONECT 1588 1191 1210 CONECT 1589 1590 1591 1592 1593 CONECT 1590 1589 CONECT 1591 1589 CONECT 1592 1589 CONECT 1593 1589 MASTER 514 0 5 0 26 0 0 6 1637 2 20 18 END