HEADER IMMUNE SYSTEM 17-JAN-25 9LLU TITLE P53 EPITOPE SPECIFIC TCR 4414A BINDING TO P53Y220D-HLA-A2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MHC CLASS I ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VAL-VAL-PRO-ASP-GLU-PRO-PRO-GLU-VAL; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: T CELL RECEPTOR 4414A CHAIN BETA; COMPND 15 CHAIN: E; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: T CELL RECEPTOR 4414A CHAIN ALPHA; COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 24 MOL_ID: 5; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 28 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS P53, NEOANTIGEN, TCR, HLA-A2, IMMUNESYSTEM, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Z.H.DUAN,D.C.WU REVDAT 1 22-JUL-26 9LLU 0 JRNL AUTH Z.H.DUAN,D.C.WU JRNL TITL P53 EPITOPE SPECIFIC TCR 4414A BINDING TO P53Y220D-HLA-A2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.470 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 22341 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.267 REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.7700 - 8.5700 0.99 1428 146 0.2035 0.1940 REMARK 3 2 8.5700 - 6.8200 1.00 1445 142 0.2047 0.1998 REMARK 3 3 6.8200 - 5.9600 1.00 1435 143 0.2750 0.2311 REMARK 3 4 5.9600 - 5.4200 1.00 1430 144 0.2345 0.2073 REMARK 3 5 5.4200 - 5.0300 1.00 1426 142 0.2396 0.2565 REMARK 3 6 5.0300 - 4.7400 1.00 1449 143 0.2308 0.2531 REMARK 3 7 4.7400 - 4.5000 1.00 1418 135 0.2130 0.2383 REMARK 3 8 4.5000 - 4.3000 1.00 1473 145 0.2344 0.2217 REMARK 3 9 4.3000 - 4.1400 1.00 1420 139 0.2384 0.3476 REMARK 3 10 4.1400 - 4.0000 1.00 1401 137 0.2639 0.2239 REMARK 3 11 4.0000 - 3.8700 1.00 1484 151 0.2708 0.3039 REMARK 3 12 3.8700 - 3.7600 1.00 1444 139 0.2745 0.2145 REMARK 3 13 3.7600 - 3.6600 1.00 1381 137 0.2592 0.2803 REMARK 3 14 3.6600 - 3.5700 1.00 1476 148 0.3002 0.2664 REMARK 3 15 3.5700 - 3.4900 1.00 1467 141 0.3139 0.3312 REMARK 3 16 3.4900 - 3.4200 1.00 1394 135 0.3201 0.3046 REMARK 3 17 3.4200 - 3.3500 1.00 1442 139 0.3278 0.3226 REMARK 3 18 3.3500 - 3.2900 1.00 1477 148 0.3143 0.3226 REMARK 3 19 3.2900 - 3.2300 1.00 1419 142 0.3214 0.3383 REMARK 3 20 3.2300 - 3.1700 1.00 1380 133 0.3250 0.3847 REMARK 3 21 3.1700 - 3.1200 1.00 1463 148 0.3250 0.3512 REMARK 3 22 3.1200 - 3.0700 1.00 1443 142 0.3282 0.3083 REMARK 3 23 3.0700 - 3.0300 1.00 1453 146 0.3070 0.3512 REMARK 3 24 3.0300 - 2.9900 1.00 1456 139 0.3307 0.3529 REMARK 3 25 2.9800 - 2.9400 1.00 1367 136 0.3531 0.3340 REMARK 3 26 2.9400 - 2.9100 1.00 1472 145 0.3599 0.4442 REMARK 3 27 2.9100 - 2.8700 1.00 1424 143 0.3702 0.4254 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6782 REMARK 3 ANGLE : 1.938 9209 REMARK 3 CHIRALITY : 0.098 970 REMARK 3 PLANARITY : 0.016 1206 REMARK 3 DIHEDRAL : 18.365 2468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.9555 19.5487 -48.6695 REMARK 3 T TENSOR REMARK 3 T11: 0.4481 T22: 0.5889 REMARK 3 T33: 0.5373 T12: 0.0393 REMARK 3 T13: 0.0102 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 0.2117 L22: 0.1271 REMARK 3 L33: 2.5183 L12: -0.1643 REMARK 3 L13: 0.7688 L23: -0.3004 REMARK 3 S TENSOR REMARK 3 S11: 0.0536 S12: 0.2337 S13: 0.0551 REMARK 3 S21: -0.0358 S22: -0.1095 S23: -0.0427 REMARK 3 S31: 0.0185 S32: 1.0418 S33: -0.0050 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 21-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300055759. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97881 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22341 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 34.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M POTASSIUM CITRATE 0.1 M REMARK 280 IMINAZOLE PH7.5 22% PEG 2000 10MM MAGNESIUM FORMATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 28.13759 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 100.58778 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 28.13759 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 100.58778 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 28.13759 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -22.02500 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 100.58778 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET E 0 REMARK 465 GLU E 1 REMARK 465 THR E 2 REMARK 465 ASP E 246 REMARK 465 MET D 1 REMARK 465 GLY D 2 REMARK 465 GLU D 3 REMARK 465 ASP D 4 REMARK 465 VAL D 5 REMARK 465 GLU D 6 REMARK 465 GLN D 7 REMARK 465 PHE D 201 REMARK 465 PRO D 202 REMARK 465 SER D 203 REMARK 465 PRO D 204 REMARK 465 GLU D 205 REMARK 465 SER D 206 REMARK 465 SER D 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 87 HH TYR A 118 1.57 REMARK 500 OE1 GLN E 36 OH TYR E 89 2.05 REMARK 500 O ARG A 273 OE1 GLU A 275 2.07 REMARK 500 OE1 GLN A 255 O TRP A 274 2.08 REMARK 500 OG1 THR A 31 OH TYR A 209 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG E 197 OD1 ASP D 140 3454 1.57 REMARK 500 OE1 GLU C 5 O THR E 98 4444 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TYR A 116 N - CA - CB ANGL. DEV. = -10.9 DEGREES REMARK 500 MET B 0 CG - SD - CE ANGL. DEV. = 10.7 DEGREES REMARK 500 ARG E 57 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 162.29 -36.26 REMARK 500 ASP A 29 -120.94 48.91 REMARK 500 ASN A 86 84.31 54.23 REMARK 500 SER A 88 172.24 -52.28 REMARK 500 TRP A 107 20.80 80.72 REMARK 500 TYR A 123 -50.10 -123.75 REMARK 500 ASP A 137 -166.86 -169.74 REMARK 500 VAL A 194 -128.77 -98.30 REMARK 500 GLN A 226 -85.27 -150.63 REMARK 500 ASP A 227 51.34 -94.46 REMARK 500 GLN A 253 58.90 -99.14 REMARK 500 PRO A 269 102.77 -54.48 REMARK 500 ASN B 17 95.97 -54.70 REMARK 500 ASN B 21 -157.40 -155.84 REMARK 500 GLU B 47 -66.68 -90.51 REMARK 500 TRP B 60 -6.86 89.63 REMARK 500 GLU B 74 -71.28 -31.41 REMARK 500 ASP C 4 -176.81 -65.06 REMARK 500 GLN E 17 -175.78 -61.15 REMARK 500 ILE E 46 -65.40 -98.98 REMARK 500 ARG E 51 60.88 31.01 REMARK 500 GLU E 52 -23.67 81.37 REMARK 500 ASN E 55 -100.75 -112.70 REMARK 500 ASN E 59 82.37 -57.10 REMARK 500 PRO E 61 164.67 -43.45 REMARK 500 TYR E 72 -1.64 95.78 REMARK 500 LEU E 95 -70.24 -85.21 REMARK 500 TYR E 102 -165.11 -48.42 REMARK 500 ASN E 103 -52.89 67.36 REMARK 500 PHE E 107 117.99 68.72 REMARK 500 PRO E 132 158.87 -42.87 REMARK 500 PRO E 154 -165.90 -74.52 REMARK 500 GLU E 167 -143.93 -70.64 REMARK 500 HIS E 169 -24.60 -146.74 REMARK 500 ALA E 184 -65.17 -94.18 REMARK 500 SER E 220 -157.52 -114.05 REMARK 500 ASP E 223 156.61 -49.42 REMARK 500 ALA E 241 149.19 -171.53 REMARK 500 LEU D 9 -37.82 -166.46 REMARK 500 THR D 26 -90.79 -78.87 REMARK 500 SER D 30 133.99 -34.08 REMARK 500 PRO D 40 -123.92 9.83 REMARK 500 LEU D 46 108.95 -56.91 REMARK 500 SER D 52 23.73 -78.86 REMARK 500 GLN D 60 -125.22 49.35 REMARK 500 ASN D 67 73.65 -103.77 REMARK 500 LYS D 71 46.90 39.65 REMARK 500 LEU D 112 -119.68 -87.81 REMARK 500 ILE D 115 -6.29 73.14 REMARK 500 ASN D 117 43.23 71.98 REMARK 500 REMARK 500 THIS ENTRY HAS 67 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 248 VAL A 249 -149.76 REMARK 500 THR D 98 TYR D 99 145.74 REMARK 500 ASN D 191 ASN D 192 132.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 48 0.07 SIDE CHAIN REMARK 500 ARG A 82 0.07 SIDE CHAIN REMARK 500 ARG E 195 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 9LLU A 1 275 UNP Q8WLS4 Q8WLS4_HUMAN 25 299 DBREF 9LLU B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 9LLU C 1 9 PDB 9LLU 9LLU 1 9 DBREF 9LLU E 0 246 PDB 9LLU 9LLU 0 246 DBREF 9LLU D 1 207 PDB 9LLU 9LLU 1 207 SEQADV 9LLU MET A 0 UNP Q8WLS4 INITIATING METHIONINE SEQADV 9LLU MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 276 MET GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SEQRES 2 A 276 SER ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL SEQRES 3 A 276 GLY TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER SEQRES 4 A 276 ASP ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP SEQRES 5 A 276 ILE GLU GLN GLU GLY PRO GLU TYR TRP ASP GLY GLU THR SEQRES 6 A 276 ARG LYS VAL LYS ALA HIS SER GLN THR HIS ARG VAL ASP SEQRES 7 A 276 LEU GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA SEQRES 8 A 276 GLY SER HIS THR VAL GLN ARG MET TYR GLY CYS ASP VAL SEQRES 9 A 276 GLY SER ASP TRP ARG PHE LEU ARG GLY TYR HIS GLN TYR SEQRES 10 A 276 ALA TYR ASP GLY LYS ASP TYR ILE ALA LEU LYS GLU ASP SEQRES 11 A 276 LEU ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN THR SEQRES 12 A 276 THR LYS HIS LYS TRP GLU ALA ALA HIS VAL ALA GLU GLN SEQRES 13 A 276 LEU ARG ALA TYR LEU GLU GLY THR CYS VAL GLU TRP LEU SEQRES 14 A 276 ARG ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG SEQRES 15 A 276 THR ASP ALA PRO LYS THR HIS MET THR HIS HIS ALA VAL SEQRES 16 A 276 SER ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU SER SEQRES 17 A 276 PHE TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP SEQRES 18 A 276 GLY GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR SEQRES 19 A 276 ARG PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA SEQRES 20 A 276 VAL VAL VAL PRO SER GLY GLN GLU GLN ARG TYR THR CYS SEQRES 21 A 276 HIS VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU SEQRES 22 A 276 ARG TRP GLU SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 VAL VAL PRO ASP GLU PRO PRO GLU VAL SEQRES 1 E 247 MET GLU THR GLY VAL THR GLN SER PRO THR HIS LEU ILE SEQRES 2 E 247 LYS THR ARG GLY GLN GLN VAL THR LEU ARG CYS SER SER SEQRES 3 E 247 GLN SER GLY HIS ASN THR VAL SER TRP TYR GLN GLN ALA SEQRES 4 E 247 LEU GLY GLN GLY PRO GLN PHE ILE PHE GLN TYR TYR ARG SEQRES 5 E 247 GLU GLU GLU ASN GLY ARG GLY ASN PHE PRO PRO ARG PHE SEQRES 6 E 247 SER GLY LEU GLN PHE PRO ASN TYR SER SER GLU LEU ASN SEQRES 7 E 247 VAL ASN ALA LEU GLU LEU ASP ASP SER ALA LEU TYR LEU SEQRES 8 E 247 CYS ALA SER SER LEU GLY GLY THR GLY GLY ILE TYR ASN SEQRES 9 E 247 GLU GLN PHE PHE GLY PRO GLY THR ARG LEU THR VAL LEU SEQRES 10 E 247 GLU ASP LEU LYS ASN VAL PHE PRO PRO GLU VAL ALA VAL SEQRES 11 E 247 PHE GLU PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS SEQRES 12 E 247 ALA THR LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP SEQRES 13 E 247 HIS VAL GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL SEQRES 14 E 247 HIS SER GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU SEQRES 15 E 247 GLN PRO ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER SEQRES 16 E 247 ARG LEU ARG VAL SER ALA THR PHE TRP GLN ASN PRO ARG SEQRES 17 E 247 ASN HIS PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER SEQRES 18 E 247 GLU ASN ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL SEQRES 19 E 247 THR GLN ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP SEQRES 1 D 207 MET GLY GLU ASP VAL GLU GLN SER LEU PHE LEU SER VAL SEQRES 2 D 207 ARG GLU GLY ASP SER SER VAL ILE ASN CYS THR TYR THR SEQRES 3 D 207 ASP SER SER SER THR TYR LEU TYR TRP TYR LYS GLN GLU SEQRES 4 D 207 PRO GLY ALA GLY LEU GLN LEU LEU THR TYR ILE PHE SER SEQRES 5 D 207 ASN MET ASP MET LYS GLN ASP GLN ARG LEU THR VAL LEU SEQRES 6 D 207 LEU ASN LYS LYS ASP LYS HIS LEU SER LEU ARG ILE ALA SEQRES 7 D 207 ASP THR GLN THR GLY ASP SER ALA ILE TYR PHE CYS ALA SEQRES 8 D 207 GLU ILE SER THR SER GLY THR TYR LYS TYR ILE PHE GLY SEQRES 9 D 207 THR GLY THR ARG LEU LYS VAL LEU ALA ASN ILE GLN ASN SEQRES 10 D 207 PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SEQRES 11 D 207 SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER SEQRES 12 D 207 GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR SEQRES 13 D 207 ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP SEQRES 14 D 207 PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER SEQRES 15 D 207 ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE SEQRES 16 D 207 PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 HIS A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 GLU E 82 SER E 86 5 5 HELIX 8 AA8 SER E 133 GLN E 141 1 9 HELIX 9 AA9 ALA E 200 ASN E 205 1 6 HELIX 10 AB1 LYS D 68 ASP D 70 5 3 HELIX 11 AB2 GLN D 81 SER D 85 5 5 SHEET 1 AA1 6 GLU A 46 PRO A 47 0 SHEET 2 AA1 6 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 6 ARG A 21 VAL A 28 -1 N ALA A 24 O PHE A 36 SHEET 4 AA1 6 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA1 6 CYS A 101 VAL A 103 -1 O VAL A 103 N HIS A 3 SHEET 6 AA1 6 PHE A 109 GLY A 112 -1 O ARG A 111 N ASP A 102 SHEET 1 AA2 8 GLU A 46 PRO A 47 0 SHEET 2 AA2 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA2 8 ARG A 21 VAL A 28 -1 N ALA A 24 O PHE A 36 SHEET 4 AA2 8 HIS A 3 VAL A 12 -1 N PHE A 8 O VAL A 25 SHEET 5 AA2 8 THR A 94 MET A 98 -1 O ARG A 97 N PHE A 9 SHEET 6 AA2 8 GLN A 115 TYR A 118 -1 O ALA A 117 N GLN A 96 SHEET 7 AA2 8 LYS A 121 LEU A 126 -1 O TYR A 123 N TYR A 116 SHEET 8 AA2 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA3 4 LYS A 186 ALA A 193 0 SHEET 2 AA3 4 ALA A 199 LEU A 206 -1 O THR A 200 N HIS A 192 SHEET 3 AA3 4 ALA A 245 VAL A 249 -1 O VAL A 247 N LEU A 201 SHEET 4 AA3 4 THR A 228 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 216 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 HIS A 260 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 THR A 271 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 2 ARG A 234 PRO A 235 0 SHEET 2 AA5 2 PHE A 241 GLN A 242 -1 O GLN A 242 N ARG A 234 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA6 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA7 4 LYS B 6 SER B 11 0 SHEET 2 AA7 4 ASN B 21 PHE B 30 -1 O ASN B 24 N TYR B 10 SHEET 3 AA7 4 PHE B 62 PHE B 70 -1 O THR B 68 N LEU B 23 SHEET 4 AA7 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA8 4 GLU B 44 ARG B 45 0 SHEET 2 AA8 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA8 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA8 4 LYS B 91 LYS B 94 -1 O VAL B 93 N CYS B 80 SHEET 1 AA9 4 GLN E 6 SER E 7 0 SHEET 2 AA9 4 VAL E 19 CYS E 23 -1 O ARG E 22 N SER E 7 SHEET 3 AA9 4 SER E 74 VAL E 78 -1 O VAL E 78 N VAL E 19 SHEET 4 AA9 4 PHE E 64 GLN E 68 -1 N SER E 65 O ASN E 77 SHEET 1 AB1 6 HIS E 10 THR E 14 0 SHEET 2 AB1 6 THR E 111 LEU E 116 1 O LEU E 116 N LYS E 13 SHEET 3 AB1 6 ALA E 87 SER E 94 -1 N ALA E 87 O LEU E 113 SHEET 4 AB1 6 THR E 31 GLN E 37 -1 N GLN E 37 O LEU E 88 SHEET 5 AB1 6 GLN E 44 TYR E 50 -1 O PHE E 47 N TRP E 34 SHEET 6 AB1 6 GLU E 53 ARG E 57 -1 O GLU E 53 N TYR E 50 SHEET 1 AB2 4 GLU E 126 PHE E 130 0 SHEET 2 AB2 4 LYS E 142 PHE E 152 -1 O LEU E 148 N ALA E 128 SHEET 3 AB2 4 TYR E 190 SER E 199 -1 O VAL E 198 N ALA E 143 SHEET 4 AB2 4 VAL E 172 THR E 174 -1 N CYS E 173 O ARG E 195 SHEET 1 AB3 4 GLU E 126 PHE E 130 0 SHEET 2 AB3 4 LYS E 142 PHE E 152 -1 O LEU E 148 N ALA E 128 SHEET 3 AB3 4 TYR E 190 SER E 199 -1 O VAL E 198 N ALA E 143 SHEET 4 AB3 4 LEU E 179 LYS E 180 -1 N LEU E 179 O ALA E 191 SHEET 1 AB4 3 VAL E 157 VAL E 163 0 SHEET 2 AB4 3 HIS E 209 PHE E 216 -1 O GLN E 213 N SER E 160 SHEET 3 AB4 3 GLN E 235 TRP E 242 -1 O ALA E 239 N CYS E 212 SHEET 1 AB5 5 PHE D 10 VAL D 13 0 SHEET 2 AB5 5 THR D 107 VAL D 111 1 O LYS D 110 N VAL D 13 SHEET 3 AB5 5 ALA D 86 SER D 94 -1 N ALA D 86 O LEU D 109 SHEET 4 AB5 5 TYR D 32 GLN D 38 -1 N TYR D 36 O PHE D 89 SHEET 5 AB5 5 GLN D 45 PHE D 51 -1 O ILE D 50 N LEU D 33 SHEET 1 AB6 4 PHE D 10 VAL D 13 0 SHEET 2 AB6 4 THR D 107 VAL D 111 1 O LYS D 110 N VAL D 13 SHEET 3 AB6 4 ALA D 86 SER D 94 -1 N ALA D 86 O LEU D 109 SHEET 4 AB6 4 LYS D 100 PHE D 103 -1 O ILE D 102 N GLU D 92 SHEET 1 AB7 4 SER D 19 THR D 24 0 SHEET 2 AB7 4 HIS D 72 ILE D 77 -1 O LEU D 73 N CYS D 23 SHEET 3 AB7 4 LEU D 62 ASN D 67 -1 N LEU D 65 O SER D 74 SHEET 4 AB7 4 MET D 56 ASP D 59 -1 N ASP D 59 O LEU D 62 SHEET 1 AB8 4 ALA D 121 LEU D 125 0 SHEET 2 AB8 4 VAL D 135 THR D 139 -1 O VAL D 135 N LEU D 125 SHEET 3 AB8 4 PHE D 170 TRP D 178 -1 O ALA D 177 N CYS D 136 SHEET 4 AB8 4 TYR D 156 ILE D 157 -1 N TYR D 156 O TRP D 178 SHEET 1 AB9 4 ALA D 121 LEU D 125 0 SHEET 2 AB9 4 VAL D 135 THR D 139 -1 O VAL D 135 N LEU D 125 SHEET 3 AB9 4 PHE D 170 TRP D 178 -1 O ALA D 177 N CYS D 136 SHEET 4 AB9 4 CYS D 161 MET D 165 -1 N CYS D 161 O SER D 174 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.03 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.04 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.07 SSBOND 4 CYS E 23 CYS E 91 1555 1555 2.04 SSBOND 5 CYS E 147 CYS E 212 1555 1555 2.05 SSBOND 6 CYS E 173 CYS D 161 1555 3454 2.14 SSBOND 7 CYS D 23 CYS D 90 1555 1555 2.07 SSBOND 8 CYS D 136 CYS D 186 1555 1555 2.06 CISPEP 1 TYR A 209 PRO A 210 0 0.36 CISPEP 2 HIS B 31 PRO B 32 0 0.48 CISPEP 3 SER E 7 PRO E 8 0 2.08 CISPEP 4 TYR E 153 PRO E 154 0 -0.02 CISPEP 5 SER D 193 ILE D 194 0 15.87 CRYST1 108.640 44.050 207.879 90.00 104.59 90.00 I 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009205 0.000000 0.002396 0.00000 SCALE2 0.000000 0.022701 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004971 0.00000 CONECT 1571 2565 CONECT 2565 1571 CONECT 3200 4063 CONECT 4063 3200 CONECT 4761 5662 CONECT 5662 4761 CONECT 6475 7519 CONECT 7519 6475 CONECT 8344 9375 CONECT 9375 8344 CONECT1012411206 CONECT1120610124 CONECT1191112667 CONECT1266711911 MASTER 416 0 0 11 78 0 0 6 6599 5 14 66 END