data_9LP1 # _entry.id 9LP1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9LP1 pdb_00009lp1 10.2210/pdb9lp1/pdb WWPDB D_1300056152 ? ? EMDB EMD-63266 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2026-01-28 ? 2 'EM metadata' 1 0 2026-01-28 ? 3 FSC 1 0 2026-01-28 ? 4 'Half map' 1 0 2026-01-28 1 5 'Half map' 1 0 2026-01-28 2 6 Image 1 0 2026-01-28 ? 7 'Primary map' 1 0 2026-01-28 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 FSC repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 'Half map' repository 'Initial release' ? ? 6 6 Image repository 'Initial release' ? ? 7 7 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9LP1 _pdbx_database_status.recvd_initial_deposition_date 2025-01-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB-Dev . D_1300056138 unspecified EMDB 'Cryo-EM structure of SARS-CoV-2 KP.3.1.1 RBD in complex with F61R2-780 Fab' EMD-63266 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email xinquanwang@mail.tsinghua.edu.cn _pdbx_contact_author.name_first Xinquan _pdbx_contact_author.name_last Wang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-3136-8070 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, X.' 1 ? 'Li, X.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Cryo-EM structure of SARS-CoV-2 KP.3.1.1 RBD in complex with F61R2-780 Fab' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, X.' 1 ? primary 'Li, X.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'F61R2-780 heavy chain' 12993.491 1 ? ? ? ? 2 polymer man 'F61R2-780 light chain' 11606.936 1 ? ? ? ? 3 polymer man 'Spike protein S1' 22028.887 1 ? ? ? ? 4 non-polymer syn 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EVQLVESGGGLVQPGGSLRLSCEASEIIVNRNYMNWVRQAPGKGLEWVSIIYPGGSTFYADSVKGRFTISRDNSKNTMYL QMNSLRAEDTAVYYCARSYGDFYVDFWGQGTLVTVSS ; ;EVQLVESGGGLVQPGGSLRLSCEASEIIVNRNYMNWVRQAPGKGLEWVSIIYPGGSTFYADSVKGRFTISRDNSKNTMYL QMNSLRAEDTAVYYCARSYGDFYVDFWGQGTLVTVSS ; A ? 2 'polypeptide(L)' no no ;VLTQSPGTLSLSPGERATLSCRATQSIPSTYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSINRLEPE DFAVYYCQHYGTSPFTFGPGTKVDIKR ; ;VLTQSPGTLSLSPGERATLSCRATQSIPSTYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSINRLEPE DFAVYYCQHYGTSPFTFGPGTKVDIKR ; B ? 3 'polypeptide(L)' no no ;NLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRSLRKSKLKPFERDISTEIYQAGNKPCKGKGPNCYFPLES YGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPK ; ;NLCPFHEVFNATRFASVYAWNRTRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIKGNEVSQIAPG QTGNIADYNYKLPDDFTGCVIAWNSNKLDSKHSGNYDYWYRSLRKSKLKPFERDISTEIYQAGNKPCKGKGPNCYFPLES YGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPK ; C ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name 2-acetamido-2-deoxy-beta-D-glucopyranose _pdbx_entity_nonpoly.comp_id NAG # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 VAL n 1 3 GLN n 1 4 LEU n 1 5 VAL n 1 6 GLU n 1 7 SER n 1 8 GLY n 1 9 GLY n 1 10 GLY n 1 11 LEU n 1 12 VAL n 1 13 GLN n 1 14 PRO n 1 15 GLY n 1 16 GLY n 1 17 SER n 1 18 LEU n 1 19 ARG n 1 20 LEU n 1 21 SER n 1 22 CYS n 1 23 GLU n 1 24 ALA n 1 25 SER n 1 26 GLU n 1 27 ILE n 1 28 ILE n 1 29 VAL n 1 30 ASN n 1 31 ARG n 1 32 ASN n 1 33 TYR n 1 34 MET n 1 35 ASN n 1 36 TRP n 1 37 VAL n 1 38 ARG n 1 39 GLN n 1 40 ALA n 1 41 PRO n 1 42 GLY n 1 43 LYS n 1 44 GLY n 1 45 LEU n 1 46 GLU n 1 47 TRP n 1 48 VAL n 1 49 SER n 1 50 ILE n 1 51 ILE n 1 52 TYR n 1 53 PRO n 1 54 GLY n 1 55 GLY n 1 56 SER n 1 57 THR n 1 58 PHE n 1 59 TYR n 1 60 ALA n 1 61 ASP n 1 62 SER n 1 63 VAL n 1 64 LYS n 1 65 GLY n 1 66 ARG n 1 67 PHE n 1 68 THR n 1 69 ILE n 1 70 SER n 1 71 ARG n 1 72 ASP n 1 73 ASN n 1 74 SER n 1 75 LYS n 1 76 ASN n 1 77 THR n 1 78 MET n 1 79 TYR n 1 80 LEU n 1 81 GLN n 1 82 MET n 1 83 ASN n 1 84 SER n 1 85 LEU n 1 86 ARG n 1 87 ALA n 1 88 GLU n 1 89 ASP n 1 90 THR n 1 91 ALA n 1 92 VAL n 1 93 TYR n 1 94 TYR n 1 95 CYS n 1 96 ALA n 1 97 ARG n 1 98 SER n 1 99 TYR n 1 100 GLY n 1 101 ASP n 1 102 PHE n 1 103 TYR n 1 104 VAL n 1 105 ASP n 1 106 PHE n 1 107 TRP n 1 108 GLY n 1 109 GLN n 1 110 GLY n 1 111 THR n 1 112 LEU n 1 113 VAL n 1 114 THR n 1 115 VAL n 1 116 SER n 1 117 SER n 2 1 VAL n 2 2 LEU n 2 3 THR n 2 4 GLN n 2 5 SER n 2 6 PRO n 2 7 GLY n 2 8 THR n 2 9 LEU n 2 10 SER n 2 11 LEU n 2 12 SER n 2 13 PRO n 2 14 GLY n 2 15 GLU n 2 16 ARG n 2 17 ALA n 2 18 THR n 2 19 LEU n 2 20 SER n 2 21 CYS n 2 22 ARG n 2 23 ALA n 2 24 THR n 2 25 GLN n 2 26 SER n 2 27 ILE n 2 28 PRO n 2 29 SER n 2 30 THR n 2 31 TYR n 2 32 LEU n 2 33 ALA n 2 34 TRP n 2 35 TYR n 2 36 GLN n 2 37 GLN n 2 38 LYS n 2 39 PRO n 2 40 GLY n 2 41 GLN n 2 42 ALA n 2 43 PRO n 2 44 ARG n 2 45 LEU n 2 46 LEU n 2 47 ILE n 2 48 TYR n 2 49 GLY n 2 50 ALA n 2 51 SER n 2 52 SER n 2 53 ARG n 2 54 ALA n 2 55 THR n 2 56 GLY n 2 57 ILE n 2 58 PRO n 2 59 ASP n 2 60 ARG n 2 61 PHE n 2 62 SER n 2 63 GLY n 2 64 SER n 2 65 GLY n 2 66 SER n 2 67 GLY n 2 68 THR n 2 69 ASP n 2 70 PHE n 2 71 THR n 2 72 LEU n 2 73 SER n 2 74 ILE n 2 75 ASN n 2 76 ARG n 2 77 LEU n 2 78 GLU n 2 79 PRO n 2 80 GLU n 2 81 ASP n 2 82 PHE n 2 83 ALA n 2 84 VAL n 2 85 TYR n 2 86 TYR n 2 87 CYS n 2 88 GLN n 2 89 HIS n 2 90 TYR n 2 91 GLY n 2 92 THR n 2 93 SER n 2 94 PRO n 2 95 PHE n 2 96 THR n 2 97 PHE n 2 98 GLY n 2 99 PRO n 2 100 GLY n 2 101 THR n 2 102 LYS n 2 103 VAL n 2 104 ASP n 2 105 ILE n 2 106 LYS n 2 107 ARG n 3 1 ASN n 3 2 LEU n 3 3 CYS n 3 4 PRO n 3 5 PHE n 3 6 HIS n 3 7 GLU n 3 8 VAL n 3 9 PHE n 3 10 ASN n 3 11 ALA n 3 12 THR n 3 13 ARG n 3 14 PHE n 3 15 ALA n 3 16 SER n 3 17 VAL n 3 18 TYR n 3 19 ALA n 3 20 TRP n 3 21 ASN n 3 22 ARG n 3 23 THR n 3 24 ARG n 3 25 ILE n 3 26 SER n 3 27 ASN n 3 28 CYS n 3 29 VAL n 3 30 ALA n 3 31 ASP n 3 32 TYR n 3 33 SER n 3 34 VAL n 3 35 LEU n 3 36 TYR n 3 37 ASN n 3 38 PHE n 3 39 ALA n 3 40 PRO n 3 41 PHE n 3 42 PHE n 3 43 ALA n 3 44 PHE n 3 45 LYS n 3 46 CYS n 3 47 TYR n 3 48 GLY n 3 49 VAL n 3 50 SER n 3 51 PRO n 3 52 THR n 3 53 LYS n 3 54 LEU n 3 55 ASN n 3 56 ASP n 3 57 LEU n 3 58 CYS n 3 59 PHE n 3 60 THR n 3 61 ASN n 3 62 VAL n 3 63 TYR n 3 64 ALA n 3 65 ASP n 3 66 SER n 3 67 PHE n 3 68 VAL n 3 69 ILE n 3 70 LYS n 3 71 GLY n 3 72 ASN n 3 73 GLU n 3 74 VAL n 3 75 SER n 3 76 GLN n 3 77 ILE n 3 78 ALA n 3 79 PRO n 3 80 GLY n 3 81 GLN n 3 82 THR n 3 83 GLY n 3 84 ASN n 3 85 ILE n 3 86 ALA n 3 87 ASP n 3 88 TYR n 3 89 ASN n 3 90 TYR n 3 91 LYS n 3 92 LEU n 3 93 PRO n 3 94 ASP n 3 95 ASP n 3 96 PHE n 3 97 THR n 3 98 GLY n 3 99 CYS n 3 100 VAL n 3 101 ILE n 3 102 ALA n 3 103 TRP n 3 104 ASN n 3 105 SER n 3 106 ASN n 3 107 LYS n 3 108 LEU n 3 109 ASP n 3 110 SER n 3 111 LYS n 3 112 HIS n 3 113 SER n 3 114 GLY n 3 115 ASN n 3 116 TYR n 3 117 ASP n 3 118 TYR n 3 119 TRP n 3 120 TYR n 3 121 ARG n 3 122 SER n 3 123 LEU n 3 124 ARG n 3 125 LYS n 3 126 SER n 3 127 LYS n 3 128 LEU n 3 129 LYS n 3 130 PRO n 3 131 PHE n 3 132 GLU n 3 133 ARG n 3 134 ASP n 3 135 ILE n 3 136 SER n 3 137 THR n 3 138 GLU n 3 139 ILE n 3 140 TYR n 3 141 GLN n 3 142 ALA n 3 143 GLY n 3 144 ASN n 3 145 LYS n 3 146 PRO n 3 147 CYS n 3 148 LYS n 3 149 GLY n 3 150 LYS n 3 151 GLY n 3 152 PRO n 3 153 ASN n 3 154 CYS n 3 155 TYR n 3 156 PHE n 3 157 PRO n 3 158 LEU n 3 159 GLU n 3 160 SER n 3 161 TYR n 3 162 GLY n 3 163 PHE n 3 164 ARG n 3 165 PRO n 3 166 THR n 3 167 TYR n 3 168 GLY n 3 169 VAL n 3 170 GLY n 3 171 HIS n 3 172 GLN n 3 173 PRO n 3 174 TYR n 3 175 ARG n 3 176 VAL n 3 177 VAL n 3 178 VAL n 3 179 LEU n 3 180 SER n 3 181 PHE n 3 182 GLU n 3 183 LEU n 3 184 LEU n 3 185 HIS n 3 186 ALA n 3 187 PRO n 3 188 ALA n 3 189 THR n 3 190 VAL n 3 191 CYS n 3 192 GLY n 3 193 PRO n 3 194 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 117 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 107 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 194 '2019-nCoV, SARS-CoV-2' ? 'S, 2' ? KP.3.1.1 ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 1 GLU GLU A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 GLN 3 3 3 GLN GLN A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 VAL 12 12 12 VAL VAL A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 GLY 15 15 15 GLY GLY A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 SER 17 17 17 SER SER A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 ARG 19 19 19 ARG ARG A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 SER 21 21 21 SER SER A . n A 1 22 CYS 22 22 22 CYS CYS A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 SER 25 25 25 SER SER A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 ASN 35 35 35 ASN ASN A . n A 1 36 TRP 36 36 36 TRP TRP A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 ALA 40 40 40 ALA ALA A . n A 1 41 PRO 41 41 41 PRO PRO A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLY 44 44 44 GLY GLY A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 TRP 47 47 47 TRP TRP A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ILE 51 51 51 ILE ILE A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 PRO 53 53 53 PRO PRO A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 THR 57 57 57 THR THR A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 LYS 64 64 64 LYS LYS A . n A 1 65 GLY 65 65 65 GLY GLY A . n A 1 66 ARG 66 66 66 ARG ARG A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 ASN 73 73 73 ASN ASN A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 ASN 76 76 76 ASN ASN A . n A 1 77 THR 77 77 77 THR THR A . n A 1 78 MET 78 78 78 MET MET A . n A 1 79 TYR 79 79 79 TYR TYR A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 MET 82 82 82 MET MET A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 LEU 85 85 85 LEU LEU A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 TYR 93 93 93 TYR TYR A . n A 1 94 TYR 94 94 94 TYR TYR A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ARG 97 97 97 ARG ARG A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 TYR 99 99 99 TYR TYR A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 PHE 102 102 102 PHE PHE A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 VAL 104 104 104 VAL VAL A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 PHE 106 106 106 PHE PHE A . n A 1 107 TRP 107 107 107 TRP TRP A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 GLY 110 110 110 GLY GLY A . n A 1 111 THR 111 111 111 THR THR A . n A 1 112 LEU 112 112 112 LEU LEU A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 THR 114 114 114 THR THR A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 SER 116 116 116 SER SER A . n A 1 117 SER 117 117 117 SER SER A . n B 2 1 VAL 1 1 ? ? ? B . n B 2 2 LEU 2 2 ? ? ? B . n B 2 3 THR 3 3 ? ? ? B . n B 2 4 GLN 4 4 ? ? ? B . n B 2 5 SER 5 5 ? ? ? B . n B 2 6 PRO 6 6 6 PRO PRO B . n B 2 7 GLY 7 7 7 GLY GLY B . n B 2 8 THR 8 8 8 THR THR B . n B 2 9 LEU 9 9 9 LEU LEU B . n B 2 10 SER 10 10 10 SER SER B . n B 2 11 LEU 11 11 11 LEU LEU B . n B 2 12 SER 12 12 12 SER SER B . n B 2 13 PRO 13 13 13 PRO PRO B . n B 2 14 GLY 14 14 14 GLY GLY B . n B 2 15 GLU 15 15 15 GLU GLU B . n B 2 16 ARG 16 16 16 ARG ARG B . n B 2 17 ALA 17 17 17 ALA ALA B . n B 2 18 THR 18 18 18 THR THR B . n B 2 19 LEU 19 19 19 LEU LEU B . n B 2 20 SER 20 20 20 SER SER B . n B 2 21 CYS 21 21 21 CYS CYS B . n B 2 22 ARG 22 22 22 ARG ARG B . n B 2 23 ALA 23 23 23 ALA ALA B . n B 2 24 THR 24 24 24 THR THR B . n B 2 25 GLN 25 25 25 GLN GLN B . n B 2 26 SER 26 26 26 SER SER B . n B 2 27 ILE 27 27 27 ILE ILE B . n B 2 28 PRO 28 28 28 PRO PRO B . n B 2 29 SER 29 29 29 SER SER B . n B 2 30 THR 30 30 30 THR THR B . n B 2 31 TYR 31 31 31 TYR TYR B . n B 2 32 LEU 32 32 32 LEU LEU B . n B 2 33 ALA 33 33 33 ALA ALA B . n B 2 34 TRP 34 34 34 TRP TRP B . n B 2 35 TYR 35 35 35 TYR TYR B . n B 2 36 GLN 36 36 36 GLN GLN B . n B 2 37 GLN 37 37 37 GLN GLN B . n B 2 38 LYS 38 38 38 LYS LYS B . n B 2 39 PRO 39 39 39 PRO PRO B . n B 2 40 GLY 40 40 40 GLY GLY B . n B 2 41 GLN 41 41 41 GLN GLN B . n B 2 42 ALA 42 42 42 ALA ALA B . n B 2 43 PRO 43 43 43 PRO PRO B . n B 2 44 ARG 44 44 44 ARG ARG B . n B 2 45 LEU 45 45 45 LEU LEU B . n B 2 46 LEU 46 46 46 LEU LEU B . n B 2 47 ILE 47 47 47 ILE ILE B . n B 2 48 TYR 48 48 48 TYR TYR B . n B 2 49 GLY 49 49 49 GLY GLY B . n B 2 50 ALA 50 50 50 ALA ALA B . n B 2 51 SER 51 51 51 SER SER B . n B 2 52 SER 52 52 52 SER SER B . n B 2 53 ARG 53 53 53 ARG ARG B . n B 2 54 ALA 54 54 54 ALA ALA B . n B 2 55 THR 55 55 55 THR THR B . n B 2 56 GLY 56 56 56 GLY GLY B . n B 2 57 ILE 57 57 57 ILE ILE B . n B 2 58 PRO 58 58 58 PRO PRO B . n B 2 59 ASP 59 59 59 ASP ASP B . n B 2 60 ARG 60 60 60 ARG ARG B . n B 2 61 PHE 61 61 61 PHE PHE B . n B 2 62 SER 62 62 62 SER SER B . n B 2 63 GLY 63 63 63 GLY GLY B . n B 2 64 SER 64 64 64 SER SER B . n B 2 65 GLY 65 65 65 GLY GLY B . n B 2 66 SER 66 66 66 SER SER B . n B 2 67 GLY 67 67 67 GLY GLY B . n B 2 68 THR 68 68 68 THR THR B . n B 2 69 ASP 69 69 69 ASP ASP B . n B 2 70 PHE 70 70 70 PHE PHE B . n B 2 71 THR 71 71 71 THR THR B . n B 2 72 LEU 72 72 72 LEU LEU B . n B 2 73 SER 73 73 73 SER SER B . n B 2 74 ILE 74 74 74 ILE ILE B . n B 2 75 ASN 75 75 75 ASN ASN B . n B 2 76 ARG 76 76 76 ARG ARG B . n B 2 77 LEU 77 77 77 LEU LEU B . n B 2 78 GLU 78 78 78 GLU GLU B . n B 2 79 PRO 79 79 79 PRO PRO B . n B 2 80 GLU 80 80 80 GLU GLU B . n B 2 81 ASP 81 81 81 ASP ASP B . n B 2 82 PHE 82 82 82 PHE PHE B . n B 2 83 ALA 83 83 83 ALA ALA B . n B 2 84 VAL 84 84 84 VAL VAL B . n B 2 85 TYR 85 85 85 TYR TYR B . n B 2 86 TYR 86 86 86 TYR TYR B . n B 2 87 CYS 87 87 87 CYS CYS B . n B 2 88 GLN 88 88 88 GLN GLN B . n B 2 89 HIS 89 89 89 HIS HIS B . n B 2 90 TYR 90 90 90 TYR TYR B . n B 2 91 GLY 91 91 91 GLY GLY B . n B 2 92 THR 92 92 92 THR THR B . n B 2 93 SER 93 93 93 SER SER B . n B 2 94 PRO 94 94 94 PRO PRO B . n B 2 95 PHE 95 95 95 PHE PHE B . n B 2 96 THR 96 96 96 THR THR B . n B 2 97 PHE 97 97 97 PHE PHE B . n B 2 98 GLY 98 98 98 GLY GLY B . n B 2 99 PRO 99 99 99 PRO PRO B . n B 2 100 GLY 100 100 100 GLY GLY B . n B 2 101 THR 101 101 101 THR THR B . n B 2 102 LYS 102 102 102 LYS LYS B . n B 2 103 VAL 103 103 103 VAL VAL B . n B 2 104 ASP 104 104 104 ASP ASP B . n B 2 105 ILE 105 105 105 ILE ILE B . n B 2 106 LYS 106 106 106 LYS LYS B . n B 2 107 ARG 107 107 ? ? ? B . n C 3 1 ASN 1 334 334 ASN ASN C . n C 3 2 LEU 2 335 335 LEU LEU C . n C 3 3 CYS 3 336 336 CYS CYS C . n C 3 4 PRO 4 337 337 PRO PRO C . n C 3 5 PHE 5 338 338 PHE PHE C . n C 3 6 HIS 6 339 339 HIS HIS C . n C 3 7 GLU 7 340 340 GLU GLU C . n C 3 8 VAL 8 341 341 VAL VAL C . n C 3 9 PHE 9 342 342 PHE PHE C . n C 3 10 ASN 10 343 343 ASN ASN C . n C 3 11 ALA 11 344 344 ALA ALA C . n C 3 12 THR 12 345 345 THR THR C . n C 3 13 ARG 13 346 346 ARG ARG C . n C 3 14 PHE 14 347 347 PHE PHE C . n C 3 15 ALA 15 348 348 ALA ALA C . n C 3 16 SER 16 349 349 SER SER C . n C 3 17 VAL 17 350 350 VAL VAL C . n C 3 18 TYR 18 351 351 TYR TYR C . n C 3 19 ALA 19 352 352 ALA ALA C . n C 3 20 TRP 20 353 353 TRP TRP C . n C 3 21 ASN 21 354 354 ASN ASN C . n C 3 22 ARG 22 355 355 ARG ARG C . n C 3 23 THR 23 356 356 THR THR C . n C 3 24 ARG 24 357 357 ARG ARG C . n C 3 25 ILE 25 358 358 ILE ILE C . n C 3 26 SER 26 359 359 SER SER C . n C 3 27 ASN 27 360 360 ASN ASN C . n C 3 28 CYS 28 361 361 CYS CYS C . n C 3 29 VAL 29 362 362 VAL VAL C . n C 3 30 ALA 30 363 363 ALA ALA C . n C 3 31 ASP 31 364 364 ASP ASP C . n C 3 32 TYR 32 365 365 TYR TYR C . n C 3 33 SER 33 366 366 SER SER C . n C 3 34 VAL 34 367 367 VAL VAL C . n C 3 35 LEU 35 368 368 LEU LEU C . n C 3 36 TYR 36 369 369 TYR TYR C . n C 3 37 ASN 37 370 370 ASN ASN C . n C 3 38 PHE 38 371 371 PHE PHE C . n C 3 39 ALA 39 372 372 ALA ALA C . n C 3 40 PRO 40 373 373 PRO PRO C . n C 3 41 PHE 41 374 374 PHE PHE C . n C 3 42 PHE 42 375 375 PHE PHE C . n C 3 43 ALA 43 376 376 ALA ALA C . n C 3 44 PHE 44 377 377 PHE PHE C . n C 3 45 LYS 45 378 378 LYS LYS C . n C 3 46 CYS 46 379 379 CYS CYS C . n C 3 47 TYR 47 380 380 TYR TYR C . n C 3 48 GLY 48 381 381 GLY GLY C . n C 3 49 VAL 49 382 382 VAL VAL C . n C 3 50 SER 50 383 383 SER SER C . n C 3 51 PRO 51 384 384 PRO PRO C . n C 3 52 THR 52 385 385 THR THR C . n C 3 53 LYS 53 386 386 LYS LYS C . n C 3 54 LEU 54 387 387 LEU LEU C . n C 3 55 ASN 55 388 388 ASN ASN C . n C 3 56 ASP 56 389 389 ASP ASP C . n C 3 57 LEU 57 390 390 LEU LEU C . n C 3 58 CYS 58 391 391 CYS CYS C . n C 3 59 PHE 59 392 392 PHE PHE C . n C 3 60 THR 60 393 393 THR THR C . n C 3 61 ASN 61 394 394 ASN ASN C . n C 3 62 VAL 62 395 395 VAL VAL C . n C 3 63 TYR 63 396 396 TYR TYR C . n C 3 64 ALA 64 397 397 ALA ALA C . n C 3 65 ASP 65 398 398 ASP ASP C . n C 3 66 SER 66 399 399 SER SER C . n C 3 67 PHE 67 400 400 PHE PHE C . n C 3 68 VAL 68 401 401 VAL VAL C . n C 3 69 ILE 69 402 402 ILE ILE C . n C 3 70 LYS 70 403 403 LYS LYS C . n C 3 71 GLY 71 404 404 GLY GLY C . n C 3 72 ASN 72 405 405 ASN ASN C . n C 3 73 GLU 73 406 406 GLU GLU C . n C 3 74 VAL 74 407 407 VAL VAL C . n C 3 75 SER 75 408 408 SER SER C . n C 3 76 GLN 76 409 409 GLN GLN C . n C 3 77 ILE 77 410 410 ILE ILE C . n C 3 78 ALA 78 411 411 ALA ALA C . n C 3 79 PRO 79 412 412 PRO PRO C . n C 3 80 GLY 80 413 413 GLY GLY C . n C 3 81 GLN 81 414 414 GLN GLN C . n C 3 82 THR 82 415 415 THR THR C . n C 3 83 GLY 83 416 416 GLY GLY C . n C 3 84 ASN 84 417 417 ASN ASN C . n C 3 85 ILE 85 418 418 ILE ILE C . n C 3 86 ALA 86 419 419 ALA ALA C . n C 3 87 ASP 87 420 420 ASP ASP C . n C 3 88 TYR 88 421 421 TYR TYR C . n C 3 89 ASN 89 422 422 ASN ASN C . n C 3 90 TYR 90 423 423 TYR TYR C . n C 3 91 LYS 91 424 424 LYS LYS C . n C 3 92 LEU 92 425 425 LEU LEU C . n C 3 93 PRO 93 426 426 PRO PRO C . n C 3 94 ASP 94 427 427 ASP ASP C . n C 3 95 ASP 95 428 428 ASP ASP C . n C 3 96 PHE 96 429 429 PHE PHE C . n C 3 97 THR 97 430 430 THR THR C . n C 3 98 GLY 98 431 431 GLY GLY C . n C 3 99 CYS 99 432 432 CYS CYS C . n C 3 100 VAL 100 433 433 VAL VAL C . n C 3 101 ILE 101 434 434 ILE ILE C . n C 3 102 ALA 102 435 435 ALA ALA C . n C 3 103 TRP 103 436 436 TRP TRP C . n C 3 104 ASN 104 437 437 ASN ASN C . n C 3 105 SER 105 438 438 SER SER C . n C 3 106 ASN 106 439 439 ASN ASN C . n C 3 107 LYS 107 440 440 LYS LYS C . n C 3 108 LEU 108 441 441 LEU LEU C . n C 3 109 ASP 109 442 442 ASP ASP C . n C 3 110 SER 110 443 443 SER SER C . n C 3 111 LYS 111 444 444 LYS LYS C . n C 3 112 HIS 112 445 445 HIS HIS C . n C 3 113 SER 113 446 446 SER SER C . n C 3 114 GLY 114 447 447 GLY GLY C . n C 3 115 ASN 115 448 448 ASN ASN C . n C 3 116 TYR 116 449 449 TYR TYR C . n C 3 117 ASP 117 450 450 ASP ASP C . n C 3 118 TYR 118 451 451 TYR TYR C . n C 3 119 TRP 119 452 452 TRP TRP C . n C 3 120 TYR 120 453 453 TYR TYR C . n C 3 121 ARG 121 454 454 ARG ARG C . n C 3 122 SER 122 455 455 SER SER C . n C 3 123 LEU 123 456 456 LEU LEU C . n C 3 124 ARG 124 457 457 ARG ARG C . n C 3 125 LYS 125 458 458 LYS LYS C . n C 3 126 SER 126 459 459 SER SER C . n C 3 127 LYS 127 460 460 LYS LYS C . n C 3 128 LEU 128 461 461 LEU LEU C . n C 3 129 LYS 129 462 462 LYS LYS C . n C 3 130 PRO 130 463 463 PRO PRO C . n C 3 131 PHE 131 464 464 PHE PHE C . n C 3 132 GLU 132 465 465 GLU GLU C . n C 3 133 ARG 133 466 466 ARG ARG C . n C 3 134 ASP 134 467 467 ASP ASP C . n C 3 135 ILE 135 468 468 ILE ILE C . n C 3 136 SER 136 469 469 SER SER C . n C 3 137 THR 137 470 470 THR THR C . n C 3 138 GLU 138 471 471 GLU GLU C . n C 3 139 ILE 139 472 472 ILE ILE C . n C 3 140 TYR 140 473 473 TYR TYR C . n C 3 141 GLN 141 474 474 GLN GLN C . n C 3 142 ALA 142 475 475 ALA ALA C . n C 3 143 GLY 143 476 476 GLY GLY C . n C 3 144 ASN 144 477 477 ASN ASN C . n C 3 145 LYS 145 478 478 LYS LYS C . n C 3 146 PRO 146 479 479 PRO PRO C . n C 3 147 CYS 147 480 480 CYS CYS C . n C 3 148 LYS 148 481 481 LYS LYS C . n C 3 149 GLY 149 482 482 GLY GLY C . n C 3 150 LYS 150 484 484 LYS LYS C . n C 3 151 GLY 151 485 485 GLY GLY C . n C 3 152 PRO 152 486 486 PRO PRO C . n C 3 153 ASN 153 487 487 ASN ASN C . n C 3 154 CYS 154 488 488 CYS CYS C . n C 3 155 TYR 155 489 489 TYR TYR C . n C 3 156 PHE 156 490 490 PHE PHE C . n C 3 157 PRO 157 491 491 PRO PRO C . n C 3 158 LEU 158 492 492 LEU LEU C . n C 3 159 GLU 159 493 493 GLU GLU C . n C 3 160 SER 160 494 494 SER SER C . n C 3 161 TYR 161 495 495 TYR TYR C . n C 3 162 GLY 162 496 496 GLY GLY C . n C 3 163 PHE 163 497 497 PHE PHE C . n C 3 164 ARG 164 498 498 ARG ARG C . n C 3 165 PRO 165 499 499 PRO PRO C . n C 3 166 THR 166 500 500 THR THR C . n C 3 167 TYR 167 501 501 TYR TYR C . n C 3 168 GLY 168 502 502 GLY GLY C . n C 3 169 VAL 169 503 503 VAL VAL C . n C 3 170 GLY 170 504 504 GLY GLY C . n C 3 171 HIS 171 505 505 HIS HIS C . n C 3 172 GLN 172 506 506 GLN GLN C . n C 3 173 PRO 173 507 507 PRO PRO C . n C 3 174 TYR 174 508 508 TYR TYR C . n C 3 175 ARG 175 509 509 ARG ARG C . n C 3 176 VAL 176 510 510 VAL VAL C . n C 3 177 VAL 177 511 511 VAL VAL C . n C 3 178 VAL 178 512 512 VAL VAL C . n C 3 179 LEU 179 513 513 LEU LEU C . n C 3 180 SER 180 514 514 SER SER C . n C 3 181 PHE 181 515 515 PHE PHE C . n C 3 182 GLU 182 516 516 GLU GLU C . n C 3 183 LEU 183 517 517 LEU LEU C . n C 3 184 LEU 184 518 518 LEU LEU C . n C 3 185 HIS 185 519 519 HIS HIS C . n C 3 186 ALA 186 520 520 ALA ALA C . n C 3 187 PRO 187 521 521 PRO PRO C . n C 3 188 ALA 188 522 522 ALA ALA C . n C 3 189 THR 189 523 523 THR THR C . n C 3 190 VAL 190 524 524 VAL VAL C . n C 3 191 CYS 191 525 525 CYS CYS C . n C 3 192 GLY 192 526 526 GLY GLY C . n C 3 193 PRO 193 527 527 PRO PRO C . n C 3 194 LYS 194 528 528 LYS LYS C . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id NAG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id NAG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1159 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9LP1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9LP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9LP1 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9LP1 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3350 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.593 ? 4552 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.739 ? 463 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.046 ? 475 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.008 ? 591 ? f_plane_restr ? ? # _struct.entry_id 9LP1 _struct.title 'Cryo-EM structure of SARS-CoV-2 KP.3.1.1 RBD in complex with F61R2-780 Fab' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9LP1 _struct_keywords.text 'SARS-CoV-2, RBD, antibody, VIRAL PROTEIN/IMMUNE SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM complex' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN/IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 9LP1 9LP1 ? 1 ? 1 2 PDB 9LP1 9LP1 ? 2 ? 1 3 UNP SPIKE_SARS2 P0DTC2 ? 3 ;NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQ SYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPK ; 334 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9LP1 A 1 ? 117 ? 9LP1 1 ? 117 ? 1 117 2 2 9LP1 B 1 ? 107 ? 9LP1 1 ? 107 ? 1 107 3 3 9LP1 C 1 ? 194 ? P0DTC2 334 ? 528 ? 334 528 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 9LP1 HIS C 6 ? UNP P0DTC2 GLY 339 variant 339 1 3 9LP1 THR C 23 ? UNP P0DTC2 LYS 356 conflict 356 2 3 9LP1 PHE C 38 ? UNP P0DTC2 SER 371 variant 371 3 3 9LP1 PRO C 40 ? UNP P0DTC2 SER 373 variant 373 4 3 9LP1 PHE C 42 ? UNP P0DTC2 SER 375 variant 375 5 3 9LP1 ALA C 43 ? UNP P0DTC2 THR 376 variant 376 6 3 9LP1 LYS C 70 ? UNP P0DTC2 ARG 403 conflict 403 7 3 9LP1 ASN C 72 ? UNP P0DTC2 ASP 405 variant 405 8 3 9LP1 SER C 75 ? UNP P0DTC2 ARG 408 variant 408 9 3 9LP1 ASN C 84 ? UNP P0DTC2 LYS 417 variant 417 10 3 9LP1 LYS C 107 ? UNP P0DTC2 ASN 440 variant 440 11 3 9LP1 HIS C 112 ? UNP P0DTC2 VAL 445 conflict 445 12 3 9LP1 SER C 113 ? UNP P0DTC2 GLY 446 variant 446 13 3 9LP1 ASP C 117 ? UNP P0DTC2 ASN 450 conflict 450 14 3 9LP1 TRP C 119 ? UNP P0DTC2 LEU 452 conflict 452 15 3 9LP1 SER C 122 ? UNP P0DTC2 LEU 455 conflict 455 16 3 9LP1 LEU C 123 ? UNP P0DTC2 PHE 456 variant 456 17 3 9LP1 LYS C 127 ? UNP P0DTC2 ASN 460 variant 460 18 3 9LP1 ASN C 144 ? UNP P0DTC2 SER 477 variant 477 19 3 9LP1 LYS C 145 ? UNP P0DTC2 THR 478 variant 478 20 3 9LP1 LYS C 148 ? UNP P0DTC2 ASN 481 conflict 481 21 3 9LP1 ? C ? ? UNP P0DTC2 VAL 483 deletion ? 22 3 9LP1 LYS C 150 ? UNP P0DTC2 GLU 484 variant 484 23 3 9LP1 PRO C 152 ? UNP P0DTC2 PHE 486 variant 486 24 3 9LP1 GLU C 159 ? UNP P0DTC2 GLN 493 conflict 493 25 3 9LP1 ARG C 164 ? UNP P0DTC2 GLN 498 variant 498 26 3 9LP1 TYR C 167 ? UNP P0DTC2 ASN 501 variant 501 27 3 9LP1 HIS C 171 ? UNP P0DTC2 TYR 505 variant 505 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE A 28 ? ASN A 32 ? ILE A 28 ASN A 32 5 ? 5 HELX_P HELX_P2 AA2 ASP A 61 ? LYS A 64 ? ASP A 61 LYS A 64 5 ? 4 HELX_P HELX_P3 AA3 ARG A 86 ? THR A 90 ? ARG A 86 THR A 90 5 ? 5 HELX_P HELX_P4 AA4 PRO B 28 ? TYR B 31 ? PRO B 28 TYR B 31 5 ? 4 HELX_P HELX_P5 AA5 PHE C 5 ? ASN C 10 ? PHE C 338 ASN C 343 1 ? 6 HELX_P HELX_P6 AA6 SER C 16 ? TRP C 20 ? SER C 349 TRP C 353 5 ? 5 HELX_P HELX_P7 AA7 TYR C 32 ? ASN C 37 ? TYR C 365 ASN C 370 1 ? 6 HELX_P HELX_P8 AA8 SER C 50 ? LEU C 57 ? SER C 383 LEU C 390 5 ? 8 HELX_P HELX_P9 AA9 ASN C 72 ? ILE C 77 ? ASN C 405 ILE C 410 5 ? 6 HELX_P HELX_P10 AB1 GLY C 83 ? ASN C 89 ? GLY C 416 ASN C 422 1 ? 7 HELX_P HELX_P11 AB2 GLY C 168 ? HIS C 171 ? GLY C 502 HIS C 505 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 22 A CYS 95 1_555 ? ? ? ? ? ? ? 2.032 ? ? disulf2 disulf ? ? B CYS 21 SG ? ? ? 1_555 B CYS 87 SG ? ? B CYS 21 B CYS 87 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? C CYS 3 SG ? ? ? 1_555 C CYS 28 SG ? ? C CYS 336 C CYS 361 1_555 ? ? ? ? ? ? ? 2.030 ? ? disulf4 disulf ? ? C CYS 46 SG ? ? ? 1_555 C CYS 99 SG ? ? C CYS 379 C CYS 432 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf5 disulf ? ? C CYS 58 SG ? ? ? 1_555 C CYS 191 SG ? ? C CYS 391 C CYS 525 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf6 disulf ? ? C CYS 147 SG ? ? ? 1_555 C CYS 154 SG ? ? C CYS 480 C CYS 488 1_555 ? ? ? ? ? ? ? 2.018 ? ? covale1 covale one ? C ASN 21 ND2 ? ? ? 1_555 D NAG . C1 ? ? C ASN 354 C NAG 601 1_555 ? ? ? ? ? ? ? 1.430 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 NAG D . ? ASN C 21 ? NAG C 601 ? 1_555 ASN C 354 ? 1_555 C1 ND2 ASN 1 NAG N-Glycosylation Carbohydrate 2 CYS A 22 ? CYS A 95 ? CYS A 22 ? 1_555 CYS A 95 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 21 ? CYS B 87 ? CYS B 21 ? 1_555 CYS B 87 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS C 3 ? CYS C 28 ? CYS C 336 ? 1_555 CYS C 361 ? 1_555 SG SG . . . None 'Disulfide bridge' 5 CYS C 46 ? CYS C 99 ? CYS C 379 ? 1_555 CYS C 432 ? 1_555 SG SG . . . None 'Disulfide bridge' 6 CYS C 58 ? CYS C 191 ? CYS C 391 ? 1_555 CYS C 525 ? 1_555 SG SG . . . None 'Disulfide bridge' 7 CYS C 147 ? CYS C 154 ? CYS C 480 ? 1_555 CYS C 488 ? 1_555 SG SG . . . None 'Disulfide bridge' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 39 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 372 _struct_mon_prot_cis.auth_asym_id C _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 40 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 373 _struct_mon_prot_cis.pdbx_auth_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -3.08 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 4 ? AA3 ? 5 ? AA4 ? 2 ? AA5 ? 6 ? AA6 ? 4 ? AA7 ? 3 ? AA8 ? 5 ? AA9 ? 2 ? AB1 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA5 5 6 ? anti-parallel AA6 1 2 ? parallel AA6 2 3 ? anti-parallel AA6 3 4 ? anti-parallel AA7 1 2 ? anti-parallel AA7 2 3 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel AA9 1 2 ? anti-parallel AB1 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN A 3 ? SER A 7 ? GLN A 3 SER A 7 AA1 2 SER A 21 ? SER A 25 ? SER A 21 SER A 25 AA1 3 THR A 77 ? ASN A 83 ? THR A 77 ASN A 83 AA1 4 SER A 17 ? ARG A 19 ? SER A 17 ARG A 19 AA2 1 GLN A 3 ? SER A 7 ? GLN A 3 SER A 7 AA2 2 SER A 21 ? SER A 25 ? SER A 21 SER A 25 AA2 3 THR A 77 ? ASN A 83 ? THR A 77 ASN A 83 AA2 4 THR A 68 ? ARG A 71 ? THR A 68 ARG A 71 AA3 1 THR A 57 ? TYR A 59 ? THR A 57 TYR A 59 AA3 2 LEU A 45 ? ILE A 51 ? LEU A 45 ILE A 51 AA3 3 MET A 34 ? GLN A 39 ? MET A 34 GLN A 39 AA3 4 ALA A 91 ? TYR A 94 ? ALA A 91 TYR A 94 AA3 5 THR A 111 ? VAL A 113 ? THR A 111 VAL A 113 AA4 1 ALA A 96 ? SER A 98 ? ALA A 96 SER A 98 AA4 2 VAL A 104 ? TRP A 107 ? VAL A 104 TRP A 107 AA5 1 THR B 8 ? LEU B 11 ? THR B 8 LEU B 11 AA5 2 THR B 101 ? ILE B 105 ? THR B 101 ILE B 105 AA5 3 VAL B 84 ? HIS B 89 ? VAL B 84 HIS B 89 AA5 4 ALA B 33 ? GLN B 37 ? ALA B 33 GLN B 37 AA5 5 ARG B 44 ? TYR B 48 ? ARG B 44 TYR B 48 AA5 6 SER B 52 ? ARG B 53 ? SER B 52 ARG B 53 AA6 1 THR B 8 ? LEU B 11 ? THR B 8 LEU B 11 AA6 2 THR B 101 ? ILE B 105 ? THR B 101 ILE B 105 AA6 3 VAL B 84 ? HIS B 89 ? VAL B 84 HIS B 89 AA6 4 THR B 96 ? PHE B 97 ? THR B 96 PHE B 97 AA7 1 ALA B 17 ? ARG B 22 ? ALA B 17 ARG B 22 AA7 2 ASP B 69 ? ILE B 74 ? ASP B 69 ILE B 74 AA7 3 PHE B 61 ? SER B 66 ? PHE B 61 SER B 66 AA8 1 ARG C 24 ? ILE C 25 ? ARG C 357 ILE C 358 AA8 2 ASN C 61 ? LYS C 70 ? ASN C 394 LYS C 403 AA8 3 PRO C 173 ? GLU C 182 ? PRO C 507 GLU C 516 AA8 4 GLY C 98 ? ASN C 104 ? GLY C 431 ASN C 437 AA8 5 ALA C 43 ? TYR C 47 ? ALA C 376 TYR C 380 AA9 1 TRP C 119 ? ARG C 121 ? TRP C 452 ARG C 454 AA9 2 LEU C 158 ? SER C 160 ? LEU C 492 SER C 494 AB1 1 TYR C 140 ? GLN C 141 ? TYR C 473 GLN C 474 AB1 2 CYS C 154 ? TYR C 155 ? CYS C 488 TYR C 489 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 5 ? N VAL A 5 O GLU A 23 ? O GLU A 23 AA1 2 3 N CYS A 22 ? N CYS A 22 O MET A 78 ? O MET A 78 AA1 3 4 O MET A 82 ? O MET A 82 N LEU A 18 ? N LEU A 18 AA2 1 2 N VAL A 5 ? N VAL A 5 O GLU A 23 ? O GLU A 23 AA2 2 3 N CYS A 22 ? N CYS A 22 O MET A 78 ? O MET A 78 AA2 3 4 O GLN A 81 ? O GLN A 81 N THR A 68 ? N THR A 68 AA3 1 2 O PHE A 58 ? O PHE A 58 N ILE A 50 ? N ILE A 50 AA3 2 3 O GLU A 46 ? O GLU A 46 N ARG A 38 ? N ARG A 38 AA3 3 4 N VAL A 37 ? N VAL A 37 O TYR A 94 ? O TYR A 94 AA3 4 5 N TYR A 93 ? N TYR A 93 O THR A 111 ? O THR A 111 AA4 1 2 N ARG A 97 ? N ARG A 97 O PHE A 106 ? O PHE A 106 AA5 1 2 N LEU B 9 ? N LEU B 9 O ASP B 104 ? O ASP B 104 AA5 2 3 O THR B 101 ? O THR B 101 N TYR B 85 ? N TYR B 85 AA5 3 4 O VAL B 84 ? O VAL B 84 N GLN B 37 ? N GLN B 37 AA5 4 5 N TRP B 34 ? N TRP B 34 O LEU B 46 ? O LEU B 46 AA5 5 6 N TYR B 48 ? N TYR B 48 O SER B 52 ? O SER B 52 AA6 1 2 N LEU B 9 ? N LEU B 9 O ASP B 104 ? O ASP B 104 AA6 2 3 O THR B 101 ? O THR B 101 N TYR B 85 ? N TYR B 85 AA6 3 4 N HIS B 89 ? N HIS B 89 O THR B 96 ? O THR B 96 AA7 1 2 N ALA B 17 ? N ALA B 17 O ILE B 74 ? O ILE B 74 AA7 2 3 O SER B 73 ? O SER B 73 N SER B 62 ? N SER B 62 AA8 1 2 N ILE C 25 ? N ILE C 358 O VAL C 62 ? O VAL C 395 AA8 2 3 N ASP C 65 ? N ASP C 398 O VAL C 178 ? O VAL C 512 AA8 3 4 O LEU C 179 ? O LEU C 513 N CYS C 99 ? N CYS C 432 AA8 4 5 O GLY C 98 ? O GLY C 431 N TYR C 47 ? N TYR C 380 AA9 1 2 N TYR C 120 ? N TYR C 453 O GLU C 159 ? O GLU C 493 AB1 1 2 N TYR C 140 ? N TYR C 473 O TYR C 155 ? O TYR C 489 # _pdbx_entry_details.entry_id 9LP1 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OH A TYR 99 ? ? OE2 C GLU 493 ? ? 2.11 2 1 O A ARG 31 ? ? OH C TYR 473 ? ? 2.16 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 26 ? ? 49.71 13.46 2 1 ALA B 50 ? ? 72.62 -6.11 3 1 SER B 51 ? ? -141.79 -15.83 4 1 ALA B 83 ? ? -166.91 -167.39 5 1 ASN C 422 ? ? -121.04 -52.59 6 1 ASP C 428 ? ? -98.81 31.26 7 1 SER C 438 ? ? -140.45 34.08 8 1 ASN C 487 ? ? 55.69 16.44 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9LP1 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9LP1 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.47 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 242085 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Cryo-EM structure of SARS-CoV-2 KP.3.1.1 RBD in complex with F61R2-780 Fab' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_imaging.entry_id 9LP1 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 1500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 9LP1 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9LP1 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B VAL 1 ? B VAL 1 2 1 Y 1 B LEU 2 ? B LEU 2 3 1 Y 1 B THR 3 ? B THR 3 4 1 Y 1 B GLN 4 ? B GLN 4 5 1 Y 1 B SER 5 ? B SER 5 6 1 Y 1 B ARG 107 ? B ARG 107 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 NAG C1 C N R 247 NAG C2 C N R 248 NAG C3 C N R 249 NAG C4 C N S 250 NAG C5 C N R 251 NAG C6 C N N 252 NAG C7 C N N 253 NAG C8 C N N 254 NAG N2 N N N 255 NAG O1 O N N 256 NAG O3 O N N 257 NAG O4 O N N 258 NAG O5 O N N 259 NAG O6 O N N 260 NAG O7 O N N 261 NAG H1 H N N 262 NAG H2 H N N 263 NAG H3 H N N 264 NAG H4 H N N 265 NAG H5 H N N 266 NAG H61 H N N 267 NAG H62 H N N 268 NAG H81 H N N 269 NAG H82 H N N 270 NAG H83 H N N 271 NAG HN2 H N N 272 NAG HO1 H N N 273 NAG HO3 H N N 274 NAG HO4 H N N 275 NAG HO6 H N N 276 PHE N N N N 277 PHE CA C N S 278 PHE C C N N 279 PHE O O N N 280 PHE CB C N N 281 PHE CG C Y N 282 PHE CD1 C Y N 283 PHE CD2 C Y N 284 PHE CE1 C Y N 285 PHE CE2 C Y N 286 PHE CZ C Y N 287 PHE OXT O N N 288 PHE H H N N 289 PHE H2 H N N 290 PHE HA H N N 291 PHE HB2 H N N 292 PHE HB3 H N N 293 PHE HD1 H N N 294 PHE HD2 H N N 295 PHE HE1 H N N 296 PHE HE2 H N N 297 PHE HZ H N N 298 PHE HXT H N N 299 PRO N N N N 300 PRO CA C N S 301 PRO C C N N 302 PRO O O N N 303 PRO CB C N N 304 PRO CG C N N 305 PRO CD C N N 306 PRO OXT O N N 307 PRO H H N N 308 PRO HA H N N 309 PRO HB2 H N N 310 PRO HB3 H N N 311 PRO HG2 H N N 312 PRO HG3 H N N 313 PRO HD2 H N N 314 PRO HD3 H N N 315 PRO HXT H N N 316 SER N N N N 317 SER CA C N S 318 SER C C N N 319 SER O O N N 320 SER CB C N N 321 SER OG O N N 322 SER OXT O N N 323 SER H H N N 324 SER H2 H N N 325 SER HA H N N 326 SER HB2 H N N 327 SER HB3 H N N 328 SER HG H N N 329 SER HXT H N N 330 THR N N N N 331 THR CA C N S 332 THR C C N N 333 THR O O N N 334 THR CB C N R 335 THR OG1 O N N 336 THR CG2 C N N 337 THR OXT O N N 338 THR H H N N 339 THR H2 H N N 340 THR HA H N N 341 THR HB H N N 342 THR HG1 H N N 343 THR HG21 H N N 344 THR HG22 H N N 345 THR HG23 H N N 346 THR HXT H N N 347 TRP N N N N 348 TRP CA C N S 349 TRP C C N N 350 TRP O O N N 351 TRP CB C N N 352 TRP CG C Y N 353 TRP CD1 C Y N 354 TRP CD2 C Y N 355 TRP NE1 N Y N 356 TRP CE2 C Y N 357 TRP CE3 C Y N 358 TRP CZ2 C Y N 359 TRP CZ3 C Y N 360 TRP CH2 C Y N 361 TRP OXT O N N 362 TRP H H N N 363 TRP H2 H N N 364 TRP HA H N N 365 TRP HB2 H N N 366 TRP HB3 H N N 367 TRP HD1 H N N 368 TRP HE1 H N N 369 TRP HE3 H N N 370 TRP HZ2 H N N 371 TRP HZ3 H N N 372 TRP HH2 H N N 373 TRP HXT H N N 374 TYR N N N N 375 TYR CA C N S 376 TYR C C N N 377 TYR O O N N 378 TYR CB C N N 379 TYR CG C Y N 380 TYR CD1 C Y N 381 TYR CD2 C Y N 382 TYR CE1 C Y N 383 TYR CE2 C Y N 384 TYR CZ C Y N 385 TYR OH O N N 386 TYR OXT O N N 387 TYR H H N N 388 TYR H2 H N N 389 TYR HA H N N 390 TYR HB2 H N N 391 TYR HB3 H N N 392 TYR HD1 H N N 393 TYR HD2 H N N 394 TYR HE1 H N N 395 TYR HE2 H N N 396 TYR HH H N N 397 TYR HXT H N N 398 VAL N N N N 399 VAL CA C N S 400 VAL C C N N 401 VAL O O N N 402 VAL CB C N N 403 VAL CG1 C N N 404 VAL CG2 C N N 405 VAL OXT O N N 406 VAL H H N N 407 VAL H2 H N N 408 VAL HA H N N 409 VAL HB H N N 410 VAL HG11 H N N 411 VAL HG12 H N N 412 VAL HG13 H N N 413 VAL HG21 H N N 414 VAL HG22 H N N 415 VAL HG23 H N N 416 VAL HXT H N N 417 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 NAG C1 C2 sing N N 235 NAG C1 O1 sing N N 236 NAG C1 O5 sing N N 237 NAG C1 H1 sing N N 238 NAG C2 C3 sing N N 239 NAG C2 N2 sing N N 240 NAG C2 H2 sing N N 241 NAG C3 C4 sing N N 242 NAG C3 O3 sing N N 243 NAG C3 H3 sing N N 244 NAG C4 C5 sing N N 245 NAG C4 O4 sing N N 246 NAG C4 H4 sing N N 247 NAG C5 C6 sing N N 248 NAG C5 O5 sing N N 249 NAG C5 H5 sing N N 250 NAG C6 O6 sing N N 251 NAG C6 H61 sing N N 252 NAG C6 H62 sing N N 253 NAG C7 C8 sing N N 254 NAG C7 N2 sing N N 255 NAG C7 O7 doub N N 256 NAG C8 H81 sing N N 257 NAG C8 H82 sing N N 258 NAG C8 H83 sing N N 259 NAG N2 HN2 sing N N 260 NAG O1 HO1 sing N N 261 NAG O3 HO3 sing N N 262 NAG O4 HO4 sing N N 263 NAG O6 HO6 sing N N 264 PHE N CA sing N N 265 PHE N H sing N N 266 PHE N H2 sing N N 267 PHE CA C sing N N 268 PHE CA CB sing N N 269 PHE CA HA sing N N 270 PHE C O doub N N 271 PHE C OXT sing N N 272 PHE CB CG sing N N 273 PHE CB HB2 sing N N 274 PHE CB HB3 sing N N 275 PHE CG CD1 doub Y N 276 PHE CG CD2 sing Y N 277 PHE CD1 CE1 sing Y N 278 PHE CD1 HD1 sing N N 279 PHE CD2 CE2 doub Y N 280 PHE CD2 HD2 sing N N 281 PHE CE1 CZ doub Y N 282 PHE CE1 HE1 sing N N 283 PHE CE2 CZ sing Y N 284 PHE CE2 HE2 sing N N 285 PHE CZ HZ sing N N 286 PHE OXT HXT sing N N 287 PRO N CA sing N N 288 PRO N CD sing N N 289 PRO N H sing N N 290 PRO CA C sing N N 291 PRO CA CB sing N N 292 PRO CA HA sing N N 293 PRO C O doub N N 294 PRO C OXT sing N N 295 PRO CB CG sing N N 296 PRO CB HB2 sing N N 297 PRO CB HB3 sing N N 298 PRO CG CD sing N N 299 PRO CG HG2 sing N N 300 PRO CG HG3 sing N N 301 PRO CD HD2 sing N N 302 PRO CD HD3 sing N N 303 PRO OXT HXT sing N N 304 SER N CA sing N N 305 SER N H sing N N 306 SER N H2 sing N N 307 SER CA C sing N N 308 SER CA CB sing N N 309 SER CA HA sing N N 310 SER C O doub N N 311 SER C OXT sing N N 312 SER CB OG sing N N 313 SER CB HB2 sing N N 314 SER CB HB3 sing N N 315 SER OG HG sing N N 316 SER OXT HXT sing N N 317 THR N CA sing N N 318 THR N H sing N N 319 THR N H2 sing N N 320 THR CA C sing N N 321 THR CA CB sing N N 322 THR CA HA sing N N 323 THR C O doub N N 324 THR C OXT sing N N 325 THR CB OG1 sing N N 326 THR CB CG2 sing N N 327 THR CB HB sing N N 328 THR OG1 HG1 sing N N 329 THR CG2 HG21 sing N N 330 THR CG2 HG22 sing N N 331 THR CG2 HG23 sing N N 332 THR OXT HXT sing N N 333 TRP N CA sing N N 334 TRP N H sing N N 335 TRP N H2 sing N N 336 TRP CA C sing N N 337 TRP CA CB sing N N 338 TRP CA HA sing N N 339 TRP C O doub N N 340 TRP C OXT sing N N 341 TRP CB CG sing N N 342 TRP CB HB2 sing N N 343 TRP CB HB3 sing N N 344 TRP CG CD1 doub Y N 345 TRP CG CD2 sing Y N 346 TRP CD1 NE1 sing Y N 347 TRP CD1 HD1 sing N N 348 TRP CD2 CE2 doub Y N 349 TRP CD2 CE3 sing Y N 350 TRP NE1 CE2 sing Y N 351 TRP NE1 HE1 sing N N 352 TRP CE2 CZ2 sing Y N 353 TRP CE3 CZ3 doub Y N 354 TRP CE3 HE3 sing N N 355 TRP CZ2 CH2 doub Y N 356 TRP CZ2 HZ2 sing N N 357 TRP CZ3 CH2 sing Y N 358 TRP CZ3 HZ3 sing N N 359 TRP CH2 HH2 sing N N 360 TRP OXT HXT sing N N 361 TYR N CA sing N N 362 TYR N H sing N N 363 TYR N H2 sing N N 364 TYR CA C sing N N 365 TYR CA CB sing N N 366 TYR CA HA sing N N 367 TYR C O doub N N 368 TYR C OXT sing N N 369 TYR CB CG sing N N 370 TYR CB HB2 sing N N 371 TYR CB HB3 sing N N 372 TYR CG CD1 doub Y N 373 TYR CG CD2 sing Y N 374 TYR CD1 CE1 sing Y N 375 TYR CD1 HD1 sing N N 376 TYR CD2 CE2 doub Y N 377 TYR CD2 HD2 sing N N 378 TYR CE1 CZ doub Y N 379 TYR CE1 HE1 sing N N 380 TYR CE2 CZ sing Y N 381 TYR CE2 HE2 sing N N 382 TYR CZ OH sing N N 383 TYR OH HH sing N N 384 TYR OXT HXT sing N N 385 VAL N CA sing N N 386 VAL N H sing N N 387 VAL N H2 sing N N 388 VAL CA C sing N N 389 VAL CA CB sing N N 390 VAL CA HA sing N N 391 VAL C O doub N N 392 VAL C OXT sing N N 393 VAL CB CG1 sing N N 394 VAL CB CG2 sing N N 395 VAL CB HB sing N N 396 VAL CG1 HG11 sing N N 397 VAL CG1 HG12 sing N N 398 VAL CG1 HG13 sing N N 399 VAL CG2 HG21 sing N N 400 VAL CG2 HG22 sing N N 401 VAL CG2 HG23 sing N N 402 VAL OXT HXT sing N N 403 # _em_admin.current_status REL _em_admin.deposition_date 2025-01-23 _em_admin.deposition_site PDBJ _em_admin.entry_id 9LP1 _em_admin.last_update 2026-01-28 _em_admin.map_release_date 2026-01-28 _em_admin.title 'Cryo-EM structure of SARS-CoV-2 KP.3.1.1 RBD in complex with F61R2-780 Fab' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type NONE # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 2697049 _em_entity_assembly_naturalsource.organism 'Severe acute respiratory syndrome coronavirus 2' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 9606 _em_entity_assembly_recombinant.organism 'Homo sapiens' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 1 1 1 ? ? MASKING ? 3 1 1 1 ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 6 1 1 1 ? ? 'MODEL FITTING' ? 7 1 1 ? 'UCSF Chimera' ? OTHER ? 8 1 1 1 ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? CLASSIFICATION ? 11 1 ? ? ? ? RECONSTRUCTION ? 12 1 ? ? ? ? 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9LP1 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ #