HEADER HYDROLASE 26-JAN-25 9LPV TITLE NEUTRON STRUCTURE OF GH1 BETA-GLUCOSIDASE TD2F2 2F-GLC COMPLEX AT ROOM TITLE 2 TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: SEQUENCE REFERS TO UNIPARC DATABASE UPI0002639209. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETT TM(DE3) KEYWDS TIM BARREL, HYDROLASE, NEUTRON, ROOM-TEMPERATURE EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR N.YANO,H.ARAKAWA,C.C.LIN,A.ISHIWATA,K.TANAKA,K.KUSAKA,S.FUSHINOBU REVDAT 3 19-NOV-25 9LPV 1 JRNL REVDAT 2 12-NOV-25 9LPV 1 JRNL REVDAT 1 29-OCT-25 9LPV 0 JRNL AUTH N.YANO,T.KASHIMA,H.ARAKAWA,C.C.LIN,A.ISHIWATA,H.NAMIKI, JRNL AUTH 2 N.TAKAYA,K.TANAKA,K.KUSAKA,S.FUSHINOBU JRNL TITL NEUTRON CRYSTALLOGRAPHY OF THE COVALENT INTERMEDIATE OF JRNL TITL 2 BETA-GLUCOSIDASE REVEALS REMODELING OF THE CATALYTIC CENTER. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 28122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 41166426 JRNL DOI 10.1073/PNAS.2502828122 REMARK 2 REMARK 2 RESOLUTION. 1.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.29 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 110877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.160 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 5532 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3375 REMARK 3 BIN R VALUE (WORKING SET) : 0.2685 REMARK 3 BIN FREE R VALUE : 0.2901 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 190 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 53005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM SELECTION REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2629 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3458 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300056215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 8.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110952 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.320 REMARK 200 RESOLUTION RANGE LOW (A) : 44.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.84300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 17-JAN-23 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : 8.90 REMARK 230 NUMBER OF CRYSTALS USED : NULL REMARK 230 REMARK 230 NEUTRON SOURCE : SPALLATION SOURCE REMARK 230 BEAMLINE : BL-03 REMARK 230 WAVELENGTH OR RANGE (A) : 1.86-5.76 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : DIFFRACTOMETER REMARK 230 DETECTOR MANUFACTURER : IBIX REMARK 230 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 230 DATA SCALING SOFTWARE : NULL REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 53007 REMARK 230 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 230 RESOLUTION RANGE LOW (A) : 20.070 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 230 DATA REDUNDANCY : 7.600 REMARK 230 R MERGE (I) : 0.18400 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 2.0000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 230 COMPLETENESS FOR SHELL (%) : 97.0 REMARK 230 DATA REDUNDANCY IN SHELL : 5.50 REMARK 230 R MERGE FOR SHELL (I) : 0.76000 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : 2.000 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 230 SOFTWARE USED : NULL REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: PROTEIN REACTED 2 REMARK 280 -DEOXY-2-FLUORO GLUCOSIDE 30MG/ML, 5MM TRIS PD 8.9 RESERVOIR REMARK 280 SOLUTION : 0.1M CHES PD 9.5, 0.890M K/NA TARTRATE, 5% (W/V) 1- REMARK 280 BUTYLPYRIDINIUM CHLORIDE, 0.2M LI2SO4, IN HEAVY WATER, PH 8.9, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ARG A 444 REMARK 465 GLY A 445 REMARK 465 LYS A 446 REMARK 465 LEU A 447 REMARK 465 ALA A 448 REMARK 465 ALA A 449 REMARK 465 LEU A 450 REMARK 465 GLU A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 HIS A 454 REMARK 465 HIS A 455 REMARK 465 HIS A 456 REMARK 465 HIS A 457 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 148 D1 DOD A 613 1.58 REMARK 500 DG1 THR A 322 O DOD A 618 1.58 REMARK 500 HH12 ARG A 137 OD2 ASP A 279 1.60 REMARK 500 DH12 ARG A 137 OD2 ASP A 279 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 54 -122.39 52.13 REMARK 500 TRP A 122 -4.79 93.36 REMARK 500 LEU A 132 -4.82 87.88 REMARK 500 TRP A 407 -126.74 53.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 77 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9LPH RELATED DB: PDB REMARK 900 RELATED ID: 9LPI RELATED DB: PDB REMARK 900 RELATED ID: 9LPX RELATED DB: PDB REMARK 900 RELATED ID: 9LPY RELATED DB: PDB DBREF 9LPV A 1 457 PDB 9LPV 9LPV 1 457 SEQRES 1 A 457 MET ALA GLY GLU ARG PHE PRO ALA ASP PHE VAL TRP GLY SEQRES 2 A 457 ALA ALA THR ALA ALA TYR GLN ILE GLU GLY ALA VAL ARG SEQRES 3 A 457 GLU ASP GLY ARG GLY VAL SER ILE TRP ASP THR PHE SER SEQRES 4 A 457 HIS THR PRO GLY LYS ILE ALA ASP GLY THR THR GLY ASP SEQRES 5 A 457 VAL ALA CYS ASP SER TYR HIS ARG TYR GLY GLU ASP ILE SEQRES 6 A 457 GLY LEU LEU ASN ALA LEU GLY MET ASN ALA TYR ARG PHE SEQRES 7 A 457 SER ILE ALA TRP PRO ARG ILE VAL PRO LEU GLY ALA GLY SEQRES 8 A 457 PRO ILE ASN GLN ALA GLY LEU ASP HIS TYR SER ARG MET SEQRES 9 A 457 VAL ASP ALA LEU LEU GLY ALA GLY LEU GLN PRO PHE VAL SEQRES 10 A 457 THR LEU TYR HIS TRP ASP LEU PRO GLN PRO LEU GLU ASP SEQRES 11 A 457 ARG LEU GLY TRP GLY SER ARG ALA THR ALA THR VAL PHE SEQRES 12 A 457 ALA GLU TYR ALA ASP ILE VAL VAL ARG GLN LEU GLY ASP SEQRES 13 A 457 ARG VAL THR HIS TRP ALA THR LEU ASN GLU PRO TRP CYS SEQRES 14 A 457 SER ALA MET LEU GLY TYR TYR LEU GLY VAL HIS ALA PRO SEQRES 15 A 457 GLY HIS THR ASP LEU LYS ARG GLY LEU GLU ALA SER HIS SEQRES 16 A 457 ASN LEU LEU LEU GLY HIS GLY LEU ALA VAL GLN ALA MET SEQRES 17 A 457 ARG ALA ALA ALA PRO GLN PRO LEU GLN ILE GLY ILE VAL SEQRES 18 A 457 LEU ASN LEU THR PRO THR TYR PRO ALA SER ASP SER PRO SEQRES 19 A 457 GLU ASP VAL ALA ALA ALA ARG ARG PHE ASP GLY PHE VAL SEQRES 20 A 457 ASN ARG TRP PHE LEU ASP PRO LEU ALA GLY ARG GLY TYR SEQRES 21 A 457 PRO GLN ASP MET LEU ASP TYR TYR GLY ALA ALA ALA PRO SEQRES 22 A 457 GLN ALA ASN PRO GLU ASP LEU THR GLN ILE ALA ALA PRO SEQRES 23 A 457 LEU ASP TRP LEU GLY VAL ASN TYR TYR GLU ARG MET ARG SEQRES 24 A 457 ALA VAL ASP ALA PRO ASP ALA SER LEU PRO GLN ALA GLN SEQRES 25 A 457 ARG LEU ASP ASP PRO ASP LEU PRO HIS THR ALA ASP ARG SEQRES 26 A 457 GLU VAL TYR PRO GLU GLY LEU TYR ASP ILE LEU LEU ARG SEQRES 27 A 457 LEU HIS ASN ASP TYR PRO PHE ARG PRO LEU TYR ILE THR SEQRES 28 A 457 GLU ASN GLY CYS ALA LEU HIS ASP GLU ILE ALA GLU ASP SEQRES 29 A 457 GLY GLY ILE HIS ASP GLY GLN ARG GLN ALA PHE PHE GLU SEQRES 30 A 457 ALA HIS LEU ALA GLN LEU GLN ARG ALA LEU ALA ALA GLY SEQRES 31 A 457 VAL PRO LEU LYS GLY TYR PHE ALA TRP SER LEU LEU ASP SEQRES 32 A 457 ASN PHE GLU TRP ALA MET GLY LEU SER MET ARG TYR GLY SEQRES 33 A 457 ILE CYS TYR THR ASN PHE GLU THR LEU GLU ARG ARG ILE SEQRES 34 A 457 LYS ASP SER GLY TYR TRP LEU ARG ASP PHE ILE ALA GLY SEQRES 35 A 457 GLN ARG GLY LYS LEU ALA ALA LEU GLU HIS HIS HIS HIS SEQRES 36 A 457 HIS HIS HET G2F A 501 24 HET NHE A 502 28 HETNAM G2F 2-DEOXY-2-FLUORO-ALPHA-D-GLUCOPYRANOSE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETSYN G2F 2-DEOXY-2-FLUORO-ALPHA-D-GLUCOSE; 2-DEOXY-2-FLUORO-D- HETSYN 2 G2F GLUCOSE; 2-DEOXY-2-FLUORO-GLUCOSE HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 G2F C6 H11 F O5 FORMUL 3 NHE C8 H17 N O3 S FORMUL 4 DOD *304(D2 O) HELIX 1 AA1 ALA A 17 GLU A 22 1 6 HELIX 2 AA2 ARG A 26 ARG A 30 5 5 HELIX 3 AA3 SER A 33 HIS A 40 1 8 HELIX 4 AA4 ASP A 56 LEU A 71 1 16 HELIX 5 AA5 ALA A 81 VAL A 86 1 6 HELIX 6 AA6 ASN A 94 ALA A 111 1 18 HELIX 7 AA7 PRO A 125 ASP A 130 1 6 HELIX 8 AA8 ARG A 131 GLY A 135 5 5 HELIX 9 AA9 SER A 136 GLY A 155 1 20 HELIX 10 AB1 GLU A 166 TYR A 176 1 11 HELIX 11 AB2 ASP A 186 ALA A 212 1 27 HELIX 12 AB3 SER A 233 ASN A 248 1 16 HELIX 13 AB4 ASN A 248 ALA A 256 1 9 HELIX 14 AB5 PRO A 261 GLY A 269 1 9 HELIX 15 AB6 ALA A 270 ALA A 272 5 3 HELIX 16 AB7 ASN A 276 ALA A 284 1 9 HELIX 17 AB8 PRO A 329 TYR A 343 1 15 HELIX 18 AB9 ASP A 369 ALA A 389 1 21 HELIX 19 AC1 GLU A 406 MET A 413 5 8 HELIX 20 AC2 LYS A 430 GLN A 443 1 14 SHEET 1 AA1 9 VAL A 11 ALA A 15 0 SHEET 2 AA1 9 ALA A 75 SER A 79 1 O ARG A 77 N ALA A 14 SHEET 3 AA1 9 GLN A 114 TYR A 120 1 O PHE A 116 N TYR A 76 SHEET 4 AA1 9 HIS A 160 ASN A 165 1 O ALA A 162 N VAL A 117 SHEET 5 AA1 9 GLN A 217 ASN A 223 1 O GLY A 219 N TRP A 161 SHEET 6 AA1 9 TRP A 289 ASN A 293 1 O GLY A 291 N ILE A 220 SHEET 7 AA1 9 LEU A 348 ASN A 353 1 O TYR A 349 N VAL A 292 SHEET 8 AA1 9 LEU A 393 TRP A 399 1 O LYS A 394 N LEU A 348 SHEET 9 AA1 9 VAL A 11 ALA A 15 1 N GLY A 13 O TYR A 396 SHEET 1 AA2 3 THR A 227 PRO A 229 0 SHEET 2 AA2 3 MET A 298 ASP A 302 1 O MET A 298 N TYR A 228 SHEET 3 AA2 3 ALA A 311 ARG A 313 -1 O GLN A 312 N VAL A 301 SHEET 1 AA3 2 CYS A 418 THR A 420 0 SHEET 2 AA3 2 ARG A 427 ILE A 429 -1 O ARG A 428 N TYR A 419 LINK OE2 GLU A 352 C1 G2F A 501 1555 1555 1.38 CISPEP 1 ALA A 181 PRO A 182 0 3.82 CISPEP 2 LEU A 308 PRO A 309 0 -0.20 CISPEP 3 ARG A 346 PRO A 347 0 -6.01 CISPEP 4 TRP A 399 SER A 400 0 -3.34 CRYST1 69.540 71.230 97.200 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014380 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010288 0.00000 CONECT 5812 7386 CONECT 7386 5812 7387 7394 7397 CONECT 7387 7386 7388 7396 7398 CONECT 7388 7387 7389 7392 7399 CONECT 7389 7388 7390 7393 7400 CONECT 7390 7389 7391 7394 7401 CONECT 7391 7390 7395 7402 7403 CONECT 7392 7388 7404 CONECT 7393 7389 7406 CONECT 7394 7386 7390 CONECT 7395 7391 7408 CONECT 7396 7387 CONECT 7397 7386 CONECT 7398 7387 CONECT 7399 7388 CONECT 7400 7389 CONECT 7401 7390 CONECT 7402 7391 CONECT 7403 7391 CONECT 7404 7392 CONECT 7406 7393 CONECT 7408 7395 CONECT 7410 7411 7422 7423 7424 CONECT 7411 7410 7412 7425 7426 CONECT 7412 7411 7413 7414 7427 CONECT 7413 7412 7421 7428 7429 CONECT 7414 7412 7415 CONECT 7415 7414 7416 7430 7431 CONECT 7416 7415 7417 7432 7433 CONECT 7417 7416 7418 7419 7420 CONECT 7418 7417 CONECT 7419 7417 CONECT 7420 7417 CONECT 7421 7413 7422 7434 7435 CONECT 7422 7410 7421 7436 7437 CONECT 7423 7410 CONECT 7424 7410 CONECT 7425 7411 CONECT 7426 7411 CONECT 7427 7412 CONECT 7428 7413 CONECT 7429 7413 CONECT 7430 7415 CONECT 7431 7415 CONECT 7432 7416 CONECT 7433 7416 CONECT 7434 7421 CONECT 7435 7421 CONECT 7436 7422 CONECT 7437 7422 MASTER 396 0 2 20 14 0 0 6 3786 1 50 36 END