HEADER DE NOVO PROTEIN 28-JAN-25 9LQK TITLE CRYSTAL STRUCTURE OF SYNTHETIC UBIQUITIN VARIANT R10 DESIGNED BY TITLE 2 PROTEINMPNN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN VARIANT R10; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DE NOVO PROTEIN R10 DESIGNED BY PROTEINMPNN ACTIVATES COMPND 6 RSP5 E3 LIGASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS UBIQUITIN VARIANT, PROTEINMPNN, RSP5, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR W.-L.LU,T.-P.KO,K.-P.WU REVDAT 1 12-FEB-25 9LQK 0 JRNL AUTH K.-P.WU JRNL TITL CRYSTAL STRUCTURE OF SYNTHETIC UBIQUITIN VARIANT R10 JRNL TITL 2 DESIGNED BY PROTEINMPNN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.W.KAO,W.L.LU,M.R.HO,Y.F.LIN,Y.J.HSIEH,T.P.KO, REMARK 1 AUTH 2 S.T.DANNY HSU,K.P.WU REMARK 1 TITL ROBUST DESIGN OF EFFECTIVE ALLOSTERIC ACTIVATORS FOR RSP5 E3 REMARK 1 TITL 2 LIGASE USING THE MACHINE LEARNING TOOL PROTEINMPNN. REMARK 1 REF ACS SYNTH BIOL V. 12 2310 2023 REMARK 1 REFN ESSN 2161-5063 REMARK 1 PMID 37556858 REMARK 1 DOI 10.1021/ACSSYNBIO.3C00042 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 23078 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1130 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.6600 - 3.1000 0.91 2698 149 0.1675 0.1928 REMARK 3 2 3.1000 - 2.4600 0.98 2812 139 0.1944 0.2549 REMARK 3 3 2.4600 - 2.1500 0.99 2799 146 0.1984 0.2412 REMARK 3 4 2.1500 - 1.9500 0.99 2791 148 0.1844 0.2327 REMARK 3 5 1.9500 - 1.8100 0.99 2788 145 0.2201 0.2420 REMARK 3 6 1.8100 - 1.7100 0.99 2787 138 0.2295 0.2823 REMARK 3 7 1.7100 - 1.6200 0.99 2764 144 0.2502 0.2931 REMARK 3 8 1.6200 - 1.5500 0.90 2509 121 0.2987 0.3362 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.204 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.007 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1296 REMARK 3 ANGLE : 0.900 1747 REMARK 3 CHIRALITY : 0.057 205 REMARK 3 PLANARITY : 0.007 220 REMARK 3 DIHEDRAL : 11.886 518 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4604 29.5650 15.0551 REMARK 3 T TENSOR REMARK 3 T11: 0.1961 T22: 0.2653 REMARK 3 T33: 0.2162 T12: -0.0620 REMARK 3 T13: -0.0019 T23: -0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.5170 L22: 0.3199 REMARK 3 L33: 0.4173 L12: -0.2096 REMARK 3 L13: -0.4895 L23: 0.0340 REMARK 3 S TENSOR REMARK 3 S11: -0.0950 S12: -0.1616 S13: 0.1847 REMARK 3 S21: -0.0330 S22: -0.0850 S23: -0.1760 REMARK 3 S31: 0.1606 S32: -0.4858 S33: -0.0199 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5714 29.5476 19.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.1983 T22: 0.2313 REMARK 3 T33: 0.2247 T12: -0.0137 REMARK 3 T13: -0.0230 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 0.0825 L22: 0.0503 REMARK 3 L33: 0.0802 L12: 0.0045 REMARK 3 L13: -0.0798 L23: -0.0401 REMARK 3 S TENSOR REMARK 3 S11: -0.4845 S12: -0.3950 S13: 0.4141 REMARK 3 S21: 0.4107 S22: 0.1354 S23: -0.2378 REMARK 3 S31: -0.4659 S32: -0.3822 S33: 0.0006 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0810 19.0297 18.0774 REMARK 3 T TENSOR REMARK 3 T11: 0.2441 T22: 0.2114 REMARK 3 T33: 0.1739 T12: -0.0614 REMARK 3 T13: 0.0053 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 1.3229 L22: 1.1889 REMARK 3 L33: 0.3218 L12: -0.3683 REMARK 3 L13: -0.1047 L23: -0.5929 REMARK 3 S TENSOR REMARK 3 S11: -0.1714 S12: -0.2146 S13: -0.0828 REMARK 3 S21: -0.3579 S22: 0.1832 S23: -0.0275 REMARK 3 S31: 0.2426 S32: -0.2055 S33: -0.0289 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.0175 18.3172 9.6626 REMARK 3 T TENSOR REMARK 3 T11: 0.4543 T22: 0.2644 REMARK 3 T33: 0.2447 T12: -0.0126 REMARK 3 T13: 0.1163 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.2546 L22: 0.0207 REMARK 3 L33: 0.1886 L12: -0.1086 REMARK 3 L13: 0.0979 L23: -0.0852 REMARK 3 S TENSOR REMARK 3 S11: -0.0100 S12: 0.0203 S13: -0.0309 REMARK 3 S21: -0.9023 S22: 0.0548 S23: -0.2372 REMARK 3 S31: 0.4483 S32: 0.4140 S33: 0.2958 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7016 25.0086 13.1401 REMARK 3 T TENSOR REMARK 3 T11: 0.2473 T22: 0.2015 REMARK 3 T33: 0.2273 T12: -0.0358 REMARK 3 T13: 0.0848 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 1.3950 L22: 1.2234 REMARK 3 L33: 0.7521 L12: 0.3065 REMARK 3 L13: 0.4706 L23: -0.2879 REMARK 3 S TENSOR REMARK 3 S11: -0.3253 S12: 0.0140 S13: 0.0976 REMARK 3 S21: -0.5618 S22: 0.1414 S23: -0.0983 REMARK 3 S31: 0.2771 S32: -0.0025 S33: -0.1633 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 72 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.7535 11.2778 8.8007 REMARK 3 T TENSOR REMARK 3 T11: 0.5561 T22: 0.6134 REMARK 3 T33: 0.7692 T12: 0.0820 REMARK 3 T13: 0.1508 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.0800 L22: 0.1031 REMARK 3 L33: 0.0264 L12: -0.0643 REMARK 3 L13: 0.0559 L23: -0.0463 REMARK 3 S TENSOR REMARK 3 S11: -0.3766 S12: -0.0276 S13: 0.1394 REMARK 3 S21: 0.2519 S22: 0.2198 S23: -0.2678 REMARK 3 S31: 0.1637 S32: 0.2890 S33: -0.0027 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.4280 15.0579 43.2320 REMARK 3 T TENSOR REMARK 3 T11: 0.3618 T22: 0.2662 REMARK 3 T33: 0.2231 T12: 0.0968 REMARK 3 T13: -0.1417 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 0.3570 L22: 0.9513 REMARK 3 L33: 0.3546 L12: 0.6336 REMARK 3 L13: -0.1133 L23: -0.2658 REMARK 3 S TENSOR REMARK 3 S11: 0.4073 S12: 0.3200 S13: 0.1324 REMARK 3 S21: 1.0654 S22: -0.3291 S23: -0.2499 REMARK 3 S31: -0.2016 S32: 0.0340 S33: 0.0879 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4519 20.2154 42.7444 REMARK 3 T TENSOR REMARK 3 T11: 0.3851 T22: 0.2496 REMARK 3 T33: 0.2339 T12: -0.0347 REMARK 3 T13: -0.0098 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.0511 L22: 0.0455 REMARK 3 L33: 0.0259 L12: 0.0073 REMARK 3 L13: 0.0177 L23: 0.0040 REMARK 3 S TENSOR REMARK 3 S11: -0.3774 S12: -0.3300 S13: 0.4471 REMARK 3 S21: 0.9358 S22: 0.0486 S23: -0.2541 REMARK 3 S31: -0.3238 S32: -0.0912 S33: -0.0002 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4542 20.4394 33.0504 REMARK 3 T TENSOR REMARK 3 T11: 0.1445 T22: 0.1990 REMARK 3 T33: 0.2227 T12: -0.0153 REMARK 3 T13: -0.0086 T23: -0.0119 REMARK 3 L TENSOR REMARK 3 L11: 0.2450 L22: 0.5047 REMARK 3 L33: 0.6451 L12: 0.2546 REMARK 3 L13: 0.1025 L23: -0.0762 REMARK 3 S TENSOR REMARK 3 S11: -0.0071 S12: -0.0428 S13: 0.2958 REMARK 3 S21: 0.2306 S22: 0.0344 S23: -0.0325 REMARK 3 S31: -0.3392 S32: -0.0756 S33: 0.0059 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9855 12.2652 30.3929 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.1702 REMARK 3 T33: 0.2609 T12: 0.0166 REMARK 3 T13: 0.0368 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.1286 L22: 0.2245 REMARK 3 L33: 0.0396 L12: -0.0467 REMARK 3 L13: 0.0575 L23: 0.0433 REMARK 3 S TENSOR REMARK 3 S11: -0.1131 S12: 0.1085 S13: -0.0443 REMARK 3 S21: 0.0005 S22: 0.0796 S23: -0.2709 REMARK 3 S31: 0.1738 S32: 0.0936 S33: 0.0178 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6554 9.9973 32.9427 REMARK 3 T TENSOR REMARK 3 T11: 0.2064 T22: 0.2070 REMARK 3 T33: 0.2304 T12: -0.0170 REMARK 3 T13: 0.0136 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.3428 L22: 0.2791 REMARK 3 L33: 0.1293 L12: -0.3379 REMARK 3 L13: 0.0430 L23: 0.0846 REMARK 3 S TENSOR REMARK 3 S11: -0.1378 S12: -0.0351 S13: -0.1166 REMARK 3 S21: 0.0001 S22: 0.0773 S23: 0.2801 REMARK 3 S31: 0.3265 S32: -0.2369 S33: 0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 71 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8823 12.2186 39.7191 REMARK 3 T TENSOR REMARK 3 T11: 0.2973 T22: 0.2787 REMARK 3 T33: 0.1804 T12: 0.0260 REMARK 3 T13: 0.0535 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 0.1683 L22: 1.5515 REMARK 3 L33: 0.4581 L12: 0.2999 REMARK 3 L13: 0.1430 L23: -0.2016 REMARK 3 S TENSOR REMARK 3 S11: -0.2909 S12: -0.1642 S13: -0.1516 REMARK 3 S21: 0.6581 S22: 0.1881 S23: 0.0402 REMARK 3 S31: 0.5283 S32: 0.0050 S33: -0.0005 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 72 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.0420 7.0744 24.0067 REMARK 3 T TENSOR REMARK 3 T11: 0.2979 T22: 0.9673 REMARK 3 T33: 0.6757 T12: 0.4900 REMARK 3 T13: 0.1154 T23: 0.0627 REMARK 3 L TENSOR REMARK 3 L11: 0.0197 L22: 0.0286 REMARK 3 L33: 0.0697 L12: 0.0047 REMARK 3 L13: -0.0337 L23: -0.0177 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: 0.2650 S13: -0.8334 REMARK 3 S21: -0.0195 S22: 0.2610 S23: 0.5218 REMARK 3 S31: 0.2012 S32: -0.0144 S33: 0.0005 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid -1 through 19 or REMARK 3 resid 21 through 31 or resid 33 through REMARK 3 59 or resid 61 through 76)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid -1 through 19 or REMARK 3 resid 21 through 31 or resid 33 through REMARK 3 59 or resid 61 through 76)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JAN-25. REMARK 100 THE DEPOSITION ID IS D_1300056258. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-24 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 07A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23160 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 25.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.2900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 28.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGSO4, 8% PEG4000, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.77800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.27400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.87850 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.77800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.27400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.87850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.77800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 31.27400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.87850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.77800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 31.27400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.87850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 GLY A -14 REMARK 465 SER A -13 REMARK 465 SER A -12 REMARK 465 GLY A -11 REMARK 465 GLU A -10 REMARK 465 ASN A -9 REMARK 465 LEU A -8 REMARK 465 TYR A -7 REMARK 465 PHE A -6 REMARK 465 GLN A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 SER A 77 REMARK 465 ARG A 78 REMARK 465 MET B -24 REMARK 465 GLY B -23 REMARK 465 SER B -22 REMARK 465 SER B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 GLY B -14 REMARK 465 SER B -13 REMARK 465 SER B -12 REMARK 465 GLY B -11 REMARK 465 GLU B -10 REMARK 465 ASN B -9 REMARK 465 LEU B -8 REMARK 465 TYR B -7 REMARK 465 PHE B -6 REMARK 465 GLN B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 GLY B -2 REMARK 465 ARG B 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 32 O HOH A 201 2.06 REMARK 500 OE2 GLU A 63 O HOH A 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 265 O HOH B 159 6554 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8JOA RELATED DB: PDB DBREF 9LQK A -24 78 PDB 9LQK 9LQK -24 78 DBREF 9LQK B -24 78 PDB 9LQK 9LQK -24 78 SEQRES 1 A 103 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 103 GLY GLU ASN LEU TYR PHE GLN GLY SER GLY GLY SER MET SEQRES 3 A 103 LYS ILE TYR VAL LYS LEU GLN ASP GLY THR VAL ILE GLU SEQRES 4 A 103 LEU GLU VAL GLU PRO SER ASP THR ILE LEU GLU VAL LYS SEQRES 5 A 103 GLU LYS ILE TYR GLU LYS THR GLY ILE PRO PRO GLU ASP SEQRES 6 A 103 GLN ILE LEU ILE TYR LYS GLY LYS VAL LEU GLU ASP SER SEQRES 7 A 103 LYS THR LEU ALA ASP TYR ASN ILE GLN GLU ASN ASP VAL SEQRES 8 A 103 LEU TYR LEU VAL ARG ARG LEU LYS SER PRO SER ARG SEQRES 1 B 103 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 B 103 GLY GLU ASN LEU TYR PHE GLN GLY SER GLY GLY SER MET SEQRES 3 B 103 LYS ILE TYR VAL LYS LEU GLN ASP GLY THR VAL ILE GLU SEQRES 4 B 103 LEU GLU VAL GLU PRO SER ASP THR ILE LEU GLU VAL LYS SEQRES 5 B 103 GLU LYS ILE TYR GLU LYS THR GLY ILE PRO PRO GLU ASP SEQRES 6 B 103 GLN ILE LEU ILE TYR LYS GLY LYS VAL LEU GLU ASP SER SEQRES 7 B 103 LYS THR LEU ALA ASP TYR ASN ILE GLN GLU ASN ASP VAL SEQRES 8 B 103 LEU TYR LEU VAL ARG ARG LEU LYS SER PRO SER ARG HET GOL A 101 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *175(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 GLU A 39 5 3 HELIX 3 AA3 THR B 22 GLY B 35 1 14 HELIX 4 AA4 PRO B 37 GLU B 39 5 3 HELIX 5 AA5 LEU B 56 ASN B 60 5 5 SHEET 1 AA1 5 VAL A 12 VAL A 17 0 SHEET 2 AA1 5 MET A 1 LYS A 6 -1 N ILE A 3 O LEU A 15 SHEET 3 AA1 5 VAL A 66 ARG A 71 1 O LEU A 67 N LYS A 6 SHEET 4 AA1 5 GLN A 41 TYR A 45 -1 N ILE A 42 O VAL A 70 SHEET 5 AA1 5 LYS A 48 VAL A 49 -1 O LYS A 48 N TYR A 45 SHEET 1 AA2 5 VAL B 12 VAL B 17 0 SHEET 2 AA2 5 MET B 1 LYS B 6 -1 N MET B 1 O VAL B 17 SHEET 3 AA2 5 VAL B 66 ARG B 71 1 O LEU B 67 N LYS B 6 SHEET 4 AA2 5 GLN B 41 TYR B 45 -1 N ILE B 44 O TYR B 68 SHEET 5 AA2 5 LYS B 48 VAL B 49 -1 O LYS B 48 N TYR B 45 CRYST1 57.556 62.548 89.757 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017374 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011141 0.00000 MTRIX1 1 -0.995196 0.071623 -0.066749 27.28206 1 MTRIX2 1 -0.060000 0.092577 0.993896 -1.48277 1 MTRIX3 1 0.077365 0.993126 -0.087835 14.05664 1