HEADER MOTOR PROTEIN 02-FEB-25 9LRZ TITLE CORE FILAMENT OF THE SPIROCHETE PERIPLASMIC FLAGELLA OF LEPTOSPIRA TITLE 2 BIFLEXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAGELLIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEPTOSPIRA BIFLEXA; SOURCE 3 ORGANISM_TAXID: 172 KEYWDS FILAMENT, FLAGELLAR MOTOR, MOTOR PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR A.KAWAMOTO,S.NAKAMURA,N.KOIZUMI REVDAT 1 24-DEC-25 9LRZ 0 JRNL AUTH A.KAWAMOTO,T.KURIBAYASHI,M.MORITA,S.NAKAMURA,N.KOIZUMI JRNL TITL COOPERATIVITY OF SHEATH PROTEINS IN THE FLAGELLAR ASSEMBLY JRNL TITL 2 OF LEPTOSPIRA SPIROCHETE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, GCTF, COOT, RELION, RELION, REMARK 3 RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : FLEXIBLE FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 46.180 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.400 REMARK 3 NUMBER OF PARTICLES : 273749 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING ONLY REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 9LRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1300056320. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : HELICAL REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : FILAMENT REMARK 245 PARTICLE TYPE : HELICAL REMARK 245 NAME OF SAMPLE : CORE FILAMENT OF THE SPIROCHETE REMARK 245 PERIPLASMIC FLAGELLA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 2318 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 0.01 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 59000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 281 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-63348 RELATED DB: EMDB REMARK 900 CORE FILAMENT OF THE SPIROCHETE PERIPLASMIC FLAGELLA OF LEPTOSPIRA REMARK 900 BIFLEXA DBREF1 9LRZ A 1 281 UNP A0AAQ2CSU7_LEPBI DBREF2 9LRZ A A0AAQ2CSU7 1 281 SEQRES 1 A 281 MET ILE ILE ASN HIS ASN LEU ALA ALA ILE ASN SER HIS SEQRES 2 A 281 ARG VAL LEU LYS PHE GLN ASN GLU GLU VAL SER LYS ASN SEQRES 3 A 281 MET GLU LYS LEU SER SER GLY MET ARG ILE ASN ARG ALA SEQRES 4 A 281 GLY ASP ASP ALA SER GLY LEU ALA VAL SER GLU LYS MET SEQRES 5 A 281 ARG THR GLN VAL ASN GLY LEU ARG GLN ALA GLU ARG ASN SEQRES 6 A 281 THR GLU ASP GLY MET SER LEU ILE GLN THR THR GLU GLY SEQRES 7 A 281 PHE LEU GLN GLU SER ASN ASP ILE ILE GLN ARG ILE ARG SEQRES 8 A 281 THR LEU ALA ILE GLN SER SER ASN GLY ILE TYR THR GLU SEQRES 9 A 281 GLU ASP ARG GLN MET ILE GLN VAL GLU VAL SER GLN LEU SEQRES 10 A 281 ILE ASP GLU VAL ASP ARG ILE ALA SER GLN ALA GLU PHE SEQRES 11 A 281 ASN LYS MET ASN LEU LEU GLN GLY ASP PHE ALA ARG GLY SEQRES 12 A 281 SER ARG ALA THR SER MET TRP PHE HIS ILE GLY PRO ASN SEQRES 13 A 281 MET HIS GLN ARG GLU ARG VAL PHE ILE ALA THR MET THR SEQRES 14 A 281 ALA ARG SER LEU ASN LEU LYS GLY GLN SER GLY GLU LEU SEQRES 15 A 281 LEU SER LEU SER THR ALA ASP LYS SER ASN ASP ALA ILE SEQRES 16 A 281 GLY THR LEU ASP ALA ALA LEU THR ARG ILE SER LYS GLN SEQRES 17 A 281 ARG ALA ASN LEU GLY ALA TYR PHE ASN ARG LEU GLU HIS SEQRES 18 A 281 ALA ALA LYS GLY LEU MET ASN ALA TYR GLU ASN THR GLN SEQRES 19 A 281 ALA SER GLU SER ARG ILE ARG ASP ALA ASP MET ALA GLU SEQRES 20 A 281 GLU THR VAL ALA PHE THR LYS ASN GLN ILE LEU VAL GLN SEQRES 21 A 281 SER GLY THR ALA MET LEU ALA GLN ALA ASN VAL ARG PRO SEQRES 22 A 281 GLN GLY VAL LEU SER LEU LEU ARG HELIX 1 AA1 ASN A 6 GLY A 33 1 28 HELIX 2 AA2 ASP A 42 SER A 98 1 57 HELIX 3 AA3 THR A 103 ALA A 128 1 26 HELIX 4 AA4 THR A 187 ASP A 242 1 56 HELIX 5 AA5 ASP A 244 VAL A 271 1 28 HELIX 6 AA6 ARG A 272 LEU A 280 5 9 SHEET 1 AA1 2 GLU A 129 PHE A 130 0 SHEET 2 AA1 2 MET A 133 ASN A 134 -1 O MET A 133 N PHE A 130 SHEET 1 AA2 2 MET A 149 HIS A 152 0 SHEET 2 AA2 2 ARG A 160 VAL A 163 -1 O GLU A 161 N PHE A 151 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 TER 2173 LEU A 280 MASTER 107 0 0 6 4 0 0 6 2172 1 0 22 END