HEADER DNA BINDING PROTEIN 17-FEB-25 9LX2 TITLE ANTI-CRISPR-ASSOCIATED PROTEIN, ACA11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-CRISPR-ASSOCIATED PROTEIN ACA11; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS SP.; SOURCE 3 ORGANISM_TAXID: 1306; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ACA11, ANTI-CRISPR-ASSOCIATED PROTEIN, ANTI-CRISPR PROTEIN, CRISPR- KEYWDS 2 CAS SYSTEM, DNA BINDING PROTEIN, TRANSCRIPTIONAL REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.LEE,H.H.PARK REVDAT 1 12-NOV-25 9LX2 0 JRNL AUTH S.Y.LEE,H.H.PARK JRNL TITL STRUCTURE OF ACA11 AT 1.94 ANGSTROMS RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.1_4122 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.63 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 3 NUMBER OF REFLECTIONS : 17419 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.6300 - 3.5200 0.86 2698 142 0.1741 0.2007 REMARK 3 2 3.5200 - 2.8000 0.91 2831 149 0.2080 0.2433 REMARK 3 3 2.8000 - 2.4400 0.86 2690 142 0.2099 0.2026 REMARK 3 4 2.4400 - 2.2200 0.92 2875 151 0.2061 0.2523 REMARK 3 5 2.2200 - 2.0600 0.85 2677 141 0.2174 0.2563 REMARK 3 6 2.0600 - 1.9400 0.90 2780 147 0.2502 0.2794 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.202 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.771 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 2094 REMARK 3 ANGLE : 3.169 2813 REMARK 3 CHIRALITY : 0.206 336 REMARK 3 PLANARITY : 0.015 346 REMARK 3 DIHEDRAL : 6.810 268 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 1 through 27 or REMARK 3 (resid 28 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 29 REMARK 3 through 64)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 1 through 27 or REMARK 3 (resid 28 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 29 REMARK 3 through 64)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and resid 1 through 64) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and (resid 1 through 27 or REMARK 3 (resid 28 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 29 REMARK 3 through 64)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9LX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1300056710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 125 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17422 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 27.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3000, 0.1M SODIUM REMARK 280 CITRATE PH 5.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 69 REMARK 465 HIS A 70 REMARK 465 HIS A 71 REMARK 465 HIS B 66 REMARK 465 HIS B 67 REMARK 465 HIS B 68 REMARK 465 HIS B 69 REMARK 465 HIS B 70 REMARK 465 HIS B 71 REMARK 465 HIS C 68 REMARK 465 HIS C 69 REMARK 465 HIS C 70 REMARK 465 HIS C 71 REMARK 465 GLU D 65 REMARK 465 HIS D 66 REMARK 465 HIS D 67 REMARK 465 HIS D 68 REMARK 465 HIS D 69 REMARK 465 HIS D 70 REMARK 465 HIS D 71 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 GLN C 28 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 106 O HOH C 120 1.81 REMARK 500 N MET C 1 O HOH C 101 2.05 REMARK 500 O HOH A 110 O HOH A 143 2.06 REMARK 500 O HOH C 101 O HOH C 106 2.06 REMARK 500 O ALA D 33 O ASN D 36 2.10 REMARK 500 O HOH C 103 O HOH C 112 2.16 REMARK 500 O HOH D 102 O HOH D 116 2.16 REMARK 500 OE1 GLN D 19 O HOH D 101 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS C 38 CD LYS C 38 CE 0.191 REMARK 500 LYS D 37 CE LYS D 37 NZ -0.167 REMARK 500 GLU D 54 CB GLU D 54 CG -0.263 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 13 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 LYS A 13 N - CA - CB ANGL. DEV. = 13.8 DEGREES REMARK 500 LYS A 13 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 LYS A 13 CD - CE - NZ ANGL. DEV. = 27.6 DEGREES REMARK 500 LYS A 61 CB - CG - CD ANGL. DEV. = 23.6 DEGREES REMARK 500 LYS A 61 CD - CE - NZ ANGL. DEV. = -15.1 DEGREES REMARK 500 MET B 1 CG - SD - CE ANGL. DEV. = 10.6 DEGREES REMARK 500 LYS B 61 CA - CB - CG ANGL. DEV. = -16.4 DEGREES REMARK 500 LYS B 61 CB - CG - CD ANGL. DEV. = 18.2 DEGREES REMARK 500 LYS B 61 CG - CD - CE ANGL. DEV. = -24.6 DEGREES REMARK 500 LYS B 61 CD - CE - NZ ANGL. DEV. = 21.0 DEGREES REMARK 500 LYS C 22 CB - CG - CD ANGL. DEV. = -20.8 DEGREES REMARK 500 LYS C 37 CA - CB - CG ANGL. DEV. = 20.6 DEGREES REMARK 500 LYS C 38 C - N - CA ANGL. DEV. = -20.0 DEGREES REMARK 500 LYS C 38 CB - CA - C ANGL. DEV. = -37.5 DEGREES REMARK 500 LYS C 38 N - CA - CB ANGL. DEV. = 23.9 DEGREES REMARK 500 LYS C 38 CB - CG - CD ANGL. DEV. = -17.0 DEGREES REMARK 500 LYS C 38 CG - CD - CE ANGL. DEV. = -29.3 DEGREES REMARK 500 LYS C 38 CD - CE - NZ ANGL. DEV. = 47.0 DEGREES REMARK 500 LEU C 64 CB - CG - CD2 ANGL. DEV. = 17.1 DEGREES REMARK 500 LYS D 6 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 LYS D 6 CD - CE - NZ ANGL. DEV. = -16.5 DEGREES REMARK 500 LYS D 13 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 LYS D 13 CB - CG - CD ANGL. DEV. = -22.9 DEGREES REMARK 500 LYS D 13 CD - CE - NZ ANGL. DEV. = -18.9 DEGREES REMARK 500 LYS D 37 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 LYS D 37 CA - CB - CG ANGL. DEV. = -34.8 DEGREES REMARK 500 LYS D 37 CD - CE - NZ ANGL. DEV. = -35.7 DEGREES REMARK 500 GLU D 54 CB - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 GLU D 54 CB - CG - CD ANGL. DEV. = -29.7 DEGREES REMARK 500 GLU D 54 OE1 - CD - OE2 ANGL. DEV. = -27.4 DEGREES REMARK 500 GLU D 54 CG - CD - OE1 ANGL. DEV. = 15.7 DEGREES REMARK 500 GLU D 54 N - CA - C ANGL. DEV. = 16.7 DEGREES REMARK 500 LEU D 64 CB - CG - CD1 ANGL. DEV. = -14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS C 37 35.07 39.46 REMARK 500 LYS D 37 50.70 -91.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 19 ILE C 20 130.28 REMARK 500 ASN D 36 LYS D 37 -149.95 REMARK 500 PRO D 63 LEU D 64 142.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU D 54 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 13 10.12 REMARK 500 GLN C 19 -11.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 147 DISTANCE = 7.72 ANGSTROMS DBREF 9LX2 A 1 71 PDB 9LX2 9LX2 1 71 DBREF 9LX2 B 1 71 PDB 9LX2 9LX2 1 71 DBREF 9LX2 C 1 71 PDB 9LX2 9LX2 1 71 DBREF 9LX2 D 1 71 PDB 9LX2 9LX2 1 71 SEQRES 1 A 71 MET LYS VAL ASP THR LYS GLN ILE GLU TRP LEU LEU LYS SEQRES 2 A 71 ASN ALA SER GLY TYR GLN ILE SER LYS MET SER GLY VAL SEQRES 3 A 71 ALA GLN PRO THR ILE SER ALA LEU ILE ASN LYS LYS ARG SEQRES 4 A 71 SER ILE GLU ASN LEU THR ILE GLU THR GLY HIS LYS LEU SEQRES 5 A 71 THR GLU LEU ALA ASN GLN MET GLN LYS THR PRO LEU GLU SEQRES 6 A 71 HIS HIS HIS HIS HIS HIS SEQRES 1 B 71 MET LYS VAL ASP THR LYS GLN ILE GLU TRP LEU LEU LYS SEQRES 2 B 71 ASN ALA SER GLY TYR GLN ILE SER LYS MET SER GLY VAL SEQRES 3 B 71 ALA GLN PRO THR ILE SER ALA LEU ILE ASN LYS LYS ARG SEQRES 4 B 71 SER ILE GLU ASN LEU THR ILE GLU THR GLY HIS LYS LEU SEQRES 5 B 71 THR GLU LEU ALA ASN GLN MET GLN LYS THR PRO LEU GLU SEQRES 6 B 71 HIS HIS HIS HIS HIS HIS SEQRES 1 C 71 MET LYS VAL ASP THR LYS GLN ILE GLU TRP LEU LEU LYS SEQRES 2 C 71 ASN ALA SER GLY TYR GLN ILE SER LYS MET SER GLY VAL SEQRES 3 C 71 ALA GLN PRO THR ILE SER ALA LEU ILE ASN LYS LYS ARG SEQRES 4 C 71 SER ILE GLU ASN LEU THR ILE GLU THR GLY HIS LYS LEU SEQRES 5 C 71 THR GLU LEU ALA ASN GLN MET GLN LYS THR PRO LEU GLU SEQRES 6 C 71 HIS HIS HIS HIS HIS HIS SEQRES 1 D 71 MET LYS VAL ASP THR LYS GLN ILE GLU TRP LEU LEU LYS SEQRES 2 D 71 ASN ALA SER GLY TYR GLN ILE SER LYS MET SER GLY VAL SEQRES 3 D 71 ALA GLN PRO THR ILE SER ALA LEU ILE ASN LYS LYS ARG SEQRES 4 D 71 SER ILE GLU ASN LEU THR ILE GLU THR GLY HIS LYS LEU SEQRES 5 D 71 THR GLU LEU ALA ASN GLN MET GLN LYS THR PRO LEU GLU SEQRES 6 D 71 HIS HIS HIS HIS HIS HIS FORMUL 5 HOH *127(H2 O) HELIX 1 AA1 THR A 5 ALA A 15 1 11 HELIX 2 AA2 SER A 16 GLY A 25 1 10 HELIX 3 AA3 ALA A 27 ASN A 36 1 10 HELIX 4 AA4 SER A 40 LEU A 44 5 5 HELIX 5 AA5 THR A 45 LYS A 61 1 17 HELIX 6 AA6 PRO A 63 HIS A 67 5 5 HELIX 7 AA7 THR B 5 ALA B 15 1 11 HELIX 8 AA8 SER B 16 GLY B 25 1 10 HELIX 9 AA9 ALA B 27 ASN B 36 1 10 HELIX 10 AB1 SER B 40 LEU B 44 5 5 HELIX 11 AB2 THR B 45 THR B 62 1 18 HELIX 12 AB3 THR C 5 ALA C 15 1 11 HELIX 13 AB4 SER C 16 GLY C 25 1 10 HELIX 14 AB5 ALA C 27 ASN C 36 1 10 HELIX 15 AB6 SER C 40 LEU C 44 5 5 HELIX 16 AB7 THR C 45 LYS C 61 1 17 HELIX 17 AB8 PRO C 63 HIS C 67 5 5 HELIX 18 AB9 THR D 5 ALA D 15 1 11 HELIX 19 AC1 SER D 16 GLY D 25 1 10 HELIX 20 AC2 ALA D 27 ASN D 36 1 10 HELIX 21 AC3 SER D 40 LEU D 44 5 5 HELIX 22 AC4 THR D 45 THR D 62 1 18 SHEET 1 AA1 2 LYS A 2 ASP A 4 0 SHEET 2 AA1 2 LYS D 2 ASP D 4 -1 O VAL D 3 N VAL A 3 SHEET 1 AA2 2 LYS B 2 ASP B 4 0 SHEET 2 AA2 2 LYS C 2 ASP C 4 -1 O VAL C 3 N VAL B 3 CRYST1 24.060 52.600 58.290 105.55 96.90 100.56 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.041563 0.007745 0.007679 0.00000 SCALE2 0.000000 0.019339 0.006020 0.00000 SCALE3 0.000000 0.000000 0.018099 0.00000 MTRIX1 1 -0.999374 -0.022718 0.027108 21.15747 1 MTRIX2 1 0.033329 -0.861407 0.506821 36.53653 1 MTRIX3 1 0.011837 0.507408 0.861625 -10.11175 1 MTRIX1 2 0.891466 -0.440242 0.107125 10.15221 1 MTRIX2 2 -0.437635 -0.897870 -0.048013 42.67575 1 MTRIX3 2 0.117321 -0.004080 -0.993086 1.92594 1 MTRIX1 3 -0.903467 0.411822 -0.118954 11.49340 1 MTRIX2 3 0.416433 0.777428 -0.471369 1.03821 1 MTRIX3 3 -0.101642 -0.475403 -0.873877 13.27343 1 TER 536 HIS A 68 TER 1046 GLU B 65 TER 1572 HIS C 67 TER 2073 LEU D 64 HETATM 2074 O HOH A 101 17.672 10.436 4.533 1.00 33.81 O HETATM 2075 O HOH A 102 -4.593 7.206 -6.703 1.00 53.81 O HETATM 2076 O HOH A 103 4.753 16.640 -3.527 1.00 36.88 O HETATM 2077 O HOH A 104 4.735 -5.025 -11.344 1.00 25.87 O HETATM 2078 O HOH A 105 15.004 4.786 -5.482 1.00 27.14 O HETATM 2079 O HOH A 106 10.670 16.914 -9.201 1.00 30.63 O HETATM 2080 O HOH A 107 13.372 11.243 -0.885 1.00 39.29 O HETATM 2081 O HOH A 108 8.383 -4.996 -0.655 1.00 30.91 O HETATM 2082 O HOH A 109 -6.280 -6.004 -0.857 1.00 29.33 O HETATM 2083 O HOH A 110 2.573 1.719 -13.758 1.00 33.46 O HETATM 2084 O HOH A 111 2.788 -7.178 -2.135 1.00 27.19 O HETATM 2085 O HOH A 112 13.709 -4.846 -7.911 1.00 31.01 O HETATM 2086 O HOH A 113 8.761 -11.924 -9.261 1.00 20.64 O HETATM 2087 O HOH A 114 18.487 16.377 -14.653 1.00 39.03 O HETATM 2088 O HOH A 115 16.450 -3.703 -9.355 1.00 29.15 O HETATM 2089 O HOH A 116 1.345 -8.431 -6.083 1.00 21.01 O HETATM 2090 O HOH A 117 11.488 -1.855 -0.583 1.00 26.87 O HETATM 2091 O HOH A 118 0.797 -1.474 1.681 1.00 22.66 O HETATM 2092 O HOH A 119 14.252 16.780 -5.601 1.00 47.62 O HETATM 2093 O HOH A 120 -5.044 0.437 -11.486 1.00 49.73 O HETATM 2094 O HOH A 121 -1.306 -7.686 -7.201 1.00 28.28 O HETATM 2095 O HOH A 122 1.175 12.879 -8.304 1.00 32.16 O HETATM 2096 O HOH A 123 5.319 -7.842 -1.633 1.00 29.59 O HETATM 2097 O HOH A 124 -1.803 1.841 -4.459 1.00 45.38 O HETATM 2098 O HOH A 125 -2.797 4.149 -1.588 1.00 34.46 O HETATM 2099 O HOH A 126 11.340 -8.485 -7.870 1.00 36.95 O HETATM 2100 O HOH A 127 -0.596 -1.486 9.097 1.00 37.66 O HETATM 2101 O HOH A 128 5.388 -4.089 -16.097 1.00 30.01 O HETATM 2102 O HOH A 129 10.983 -4.511 -1.751 1.00 27.27 O HETATM 2103 O HOH A 130 -1.141 6.774 -9.098 1.00 38.68 O HETATM 2104 O HOH A 131 9.005 14.607 1.041 1.00 34.40 O HETATM 2105 O HOH A 132 6.979 -2.088 2.287 1.00 29.69 O HETATM 2106 O HOH A 133 2.545 -3.549 4.903 1.00 38.45 O HETATM 2107 O HOH A 134 11.375 -5.793 -12.672 1.00 43.59 O HETATM 2108 O HOH A 135 7.636 -5.483 -11.258 1.00 26.46 O HETATM 2109 O HOH A 136 1.037 12.594 -14.037 1.00 40.35 O HETATM 2110 O HOH A 137 -3.215 -8.865 -7.514 1.00 44.24 O HETATM 2111 O HOH A 138 16.774 15.574 -4.732 1.00 51.44 O HETATM 2112 O HOH A 139 -1.427 5.419 -6.919 1.00 41.19 O HETATM 2113 O HOH A 140 18.219 19.263 -9.832 1.00 34.35 O HETATM 2114 O HOH A 141 12.056 -8.328 -10.206 1.00 45.35 O HETATM 2115 O HOH A 142 -6.711 -6.110 -10.591 1.00 41.77 O HETATM 2116 O HOH A 143 1.591 0.298 -14.877 1.00 34.95 O HETATM 2117 O HOH A 144 2.225 15.019 -8.967 1.00 34.46 O HETATM 2118 O HOH A 145 8.700 -7.102 -12.775 1.00 44.14 O HETATM 2119 O HOH A 146 2.834 -1.938 -18.450 1.00 52.77 O HETATM 2120 O HOH A 147 0.984 -4.055 -19.811 1.00 53.96 O HETATM 2121 O HOH B 101 13.254 25.892 -24.294 1.00 35.82 O HETATM 2122 O HOH B 102 18.195 23.925 -3.033 1.00 33.20 O HETATM 2123 O HOH B 103 29.187 37.160 -13.753 1.00 35.85 O HETATM 2124 O HOH B 104 15.918 20.549 -5.437 1.00 41.92 O HETATM 2125 O HOH B 105 18.811 27.834 -21.027 1.00 35.81 O HETATM 2126 O HOH B 106 22.949 33.200 -13.125 1.00 29.40 O HETATM 2127 O HOH B 107 5.844 30.176 -12.414 1.00 24.96 O HETATM 2128 O HOH B 108 17.043 41.118 -7.704 1.00 19.49 O HETATM 2129 O HOH B 109 27.901 35.139 -20.325 1.00 31.59 O HETATM 2130 O HOH B 110 25.606 36.500 -5.911 1.00 32.65 O HETATM 2131 O HOH B 111 2.903 19.634 -14.477 1.00 35.75 O HETATM 2132 O HOH B 112 21.750 26.018 -14.505 1.00 23.53 O HETATM 2133 O HOH B 113 15.713 32.108 -25.434 1.00 31.69 O HETATM 2134 O HOH B 114 19.497 38.642 -9.827 1.00 19.11 O HETATM 2135 O HOH B 115 18.335 38.726 -24.140 1.00 51.49 O HETATM 2136 O HOH B 116 4.721 32.784 -12.218 1.00 33.48 O HETATM 2137 O HOH B 117 23.780 32.184 -9.863 1.00 29.52 O HETATM 2138 O HOH B 118 9.415 38.589 -11.628 1.00 33.26 O HETATM 2139 O HOH B 119 16.763 20.241 -8.123 1.00 35.63 O HETATM 2140 O HOH B 120 18.207 30.907 -23.840 1.00 34.43 O HETATM 2141 O HOH B 121 19.732 21.318 -10.864 1.00 33.82 O HETATM 2142 O HOH B 122 1.293 15.098 -14.066 1.00 43.69 O HETATM 2143 O HOH B 123 16.312 39.317 -23.130 1.00 35.51 O HETATM 2144 O HOH B 124 19.751 40.771 -20.178 1.00 39.21 O HETATM 2145 O HOH B 125 10.537 18.161 -6.452 1.00 36.04 O HETATM 2146 O HOH B 126 14.647 35.285 -27.926 1.00 38.67 O HETATM 2147 O HOH B 127 26.221 40.731 -5.269 1.00 36.94 O HETATM 2148 O HOH B 128 4.752 28.291 -14.500 1.00 41.78 O HETATM 2149 O HOH B 129 14.610 39.673 -9.070 1.00 26.31 O HETATM 2150 O HOH B 130 9.985 40.267 -14.022 1.00 33.61 O HETATM 2151 O HOH B 131 18.824 33.629 -23.397 1.00 43.18 O HETATM 2152 O HOH B 132 14.500 39.575 -24.808 1.00 44.63 O HETATM 2153 O HOH B 133 25.748 41.171 -9.428 1.00 39.50 O HETATM 2154 O HOH B 134 12.600 18.879 -5.387 1.00 41.70 O HETATM 2155 O HOH B 135 0.613 15.668 -11.947 1.00 56.11 O HETATM 2156 O HOH B 136 19.955 28.918 -22.887 1.00 33.74 O HETATM 2157 O HOH B 137 18.633 41.376 -22.568 1.00 41.41 O HETATM 2158 O HOH B 138 19.361 16.938 -11.571 1.00 41.59 O HETATM 2159 O HOH C 101 21.785 25.577 -1.266 1.00 43.66 O HETATM 2160 O HOH C 102 4.562 27.229 24.757 1.00 56.03 O HETATM 2161 O HOH C 103 10.167 25.081 5.561 1.00 39.08 O HETATM 2162 O HOH C 104 21.869 45.715 12.372 1.00 49.48 O HETATM 2163 O HOH C 105 23.082 33.416 8.526 1.00 34.53 O HETATM 2164 O HOH C 106 21.495 24.392 -2.931 1.00 51.88 O HETATM 2165 O HOH C 107 21.126 32.074 9.140 1.00 33.11 O HETATM 2166 O HOH C 108 15.548 42.570 -3.625 1.00 24.37 O HETATM 2167 O HOH C 109 21.505 39.111 3.479 1.00 37.30 O HETATM 2168 O HOH C 110 21.879 42.586 5.434 1.00 38.90 O HETATM 2169 O HOH C 111 4.753 42.411 12.162 1.00 46.92 O HETATM 2170 O HOH C 112 11.826 24.368 6.753 1.00 41.20 O HETATM 2171 O HOH C 113 17.476 41.193 0.929 1.00 21.87 O HETATM 2172 O HOH C 114 5.302 37.479 10.968 1.00 32.41 O HETATM 2173 O HOH C 115 6.598 42.620 5.895 1.00 36.07 O HETATM 2174 O HOH C 116 18.983 25.447 9.731 1.00 38.76 O HETATM 2175 O HOH C 117 9.335 41.585 -5.043 1.00 33.35 O HETATM 2176 O HOH C 118 4.236 31.240 10.168 1.00 39.78 O HETATM 2177 O HOH C 119 14.496 47.377 3.578 1.00 32.18 O HETATM 2178 O HOH C 120 23.067 25.264 -3.149 1.00 55.47 O HETATM 2179 O HOH C 121 5.556 46.879 -0.331 1.00 40.85 O HETATM 2180 O HOH C 122 3.661 45.647 -1.291 1.00 37.23 O HETATM 2181 O HOH C 123 4.183 28.565 10.890 1.00 39.47 O HETATM 2182 O HOH C 124 24.325 24.006 -1.519 1.00 49.12 O HETATM 2183 O HOH D 101 7.555 14.511 26.882 1.00 40.52 O HETATM 2184 O HOH D 102 1.857 1.341 16.083 1.00 40.10 O HETATM 2185 O HOH D 103 11.372 22.993 12.065 1.00 34.61 O HETATM 2186 O HOH D 104 17.081 -2.121 15.651 1.00 53.03 O HETATM 2187 O HOH D 105 10.849 17.889 7.214 1.00 35.30 O HETATM 2188 O HOH D 106 -1.908 11.785 14.389 1.00 45.03 O HETATM 2189 O HOH D 107 16.678 10.480 17.998 1.00 38.35 O HETATM 2190 O HOH D 108 0.125 2.113 9.864 1.00 33.39 O HETATM 2191 O HOH D 109 13.379 -2.783 12.794 1.00 38.06 O HETATM 2192 O HOH D 110 9.691 -4.026 7.365 1.00 42.53 O HETATM 2193 O HOH D 111 6.633 0.224 26.590 1.00 45.85 O HETATM 2194 O HOH D 112 -1.296 13.963 0.622 1.00 43.38 O HETATM 2195 O HOH D 113 4.171 1.347 11.739 1.00 25.02 O HETATM 2196 O HOH D 114 15.841 3.741 13.738 1.00 42.16 O HETATM 2197 O HOH D 115 7.304 7.800 28.325 1.00 39.80 O HETATM 2198 O HOH D 116 0.149 2.629 15.754 1.00 36.36 O HETATM 2199 O HOH D 117 13.134 19.618 5.591 1.00 46.64 O HETATM 2200 O HOH D 118 12.135 19.838 7.935 1.00 49.47 O MASTER 413 0 0 22 4 0 0 15 2196 4 0 24 END