data_9LYZ # _entry.id 9LYZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 9LYZ WWPDB D_1000180068 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 6LYZ _pdbx_database_related.content_type unspecified _pdbx_database_related.details 'REAL-SPACE REFINEMENT OF THE STRUCTURE OF HEN EGG-WHITE LYSOZYME' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 9LYZ _pdbx_database_status.recvd_initial_deposition_date 1979-12-06 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kelly, J.A.' 1 'James, M.N.G.' 2 # _citation.id primary _citation.title 'X-ray crystallography of the binding of the bacterial cell wall trisaccharide NAM-NAG-NAM to lysozyme.' _citation.journal_abbrev Nature _citation.journal_volume 282 _citation.page_first 875 _citation.page_last 878 _citation.year 1979 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 514367 _citation.pdbx_database_id_DOI 10.1038/282875a0 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kelly, J.A.' 1 ? primary 'Sielecki, A.R.' 2 ? primary 'Sykes, B.D.' 3 ? primary 'James, M.N.' 4 ? primary 'Phillips, D.C.' 5 ? # _cell.entry_id 9LYZ _cell.length_a 78.970 _cell.length_b 78.970 _cell.length_c 38.250 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 9LYZ _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HEN EGG WHITE LYSOZYME' 14331.160 1 3.2.1.17 ? ? ? 2 branched man 'N-acetyl-beta-muramic acid-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-N-acetyl-beta-muramic acid' 771.718 1 ? ? ? ? 3 water nat water 18.015 101 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_seq_one_letter_code_can ;KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPC SALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LYS n 1 2 VAL n 1 3 PHE n 1 4 GLY n 1 5 ARG n 1 6 CYS n 1 7 GLU n 1 8 LEU n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 MET n 1 13 LYS n 1 14 ARG n 1 15 HIS n 1 16 GLY n 1 17 LEU n 1 18 ASP n 1 19 ASN n 1 20 TYR n 1 21 ARG n 1 22 GLY n 1 23 TYR n 1 24 SER n 1 25 LEU n 1 26 GLY n 1 27 ASN n 1 28 TRP n 1 29 VAL n 1 30 CYS n 1 31 ALA n 1 32 ALA n 1 33 LYS n 1 34 PHE n 1 35 GLU n 1 36 SER n 1 37 ASN n 1 38 PHE n 1 39 ASN n 1 40 THR n 1 41 GLN n 1 42 ALA n 1 43 THR n 1 44 ASN n 1 45 ARG n 1 46 ASN n 1 47 THR n 1 48 ASP n 1 49 GLY n 1 50 SER n 1 51 THR n 1 52 ASP n 1 53 TYR n 1 54 GLY n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 ILE n 1 59 ASN n 1 60 SER n 1 61 ARG n 1 62 TRP n 1 63 TRP n 1 64 CYS n 1 65 ASN n 1 66 ASP n 1 67 GLY n 1 68 ARG n 1 69 THR n 1 70 PRO n 1 71 GLY n 1 72 SER n 1 73 ARG n 1 74 ASN n 1 75 LEU n 1 76 CYS n 1 77 ASN n 1 78 ILE n 1 79 PRO n 1 80 CYS n 1 81 SER n 1 82 ALA n 1 83 LEU n 1 84 LEU n 1 85 SER n 1 86 SER n 1 87 ASP n 1 88 ILE n 1 89 THR n 1 90 ALA n 1 91 SER n 1 92 VAL n 1 93 ASN n 1 94 CYS n 1 95 ALA n 1 96 LYS n 1 97 LYS n 1 98 ILE n 1 99 VAL n 1 100 SER n 1 101 ASP n 1 102 GLY n 1 103 ASN n 1 104 GLY n 1 105 MET n 1 106 ASN n 1 107 ALA n 1 108 TRP n 1 109 VAL n 1 110 ALA n 1 111 TRP n 1 112 ARG n 1 113 ASN n 1 114 ARG n 1 115 CYS n 1 116 LYS n 1 117 GLY n 1 118 THR n 1 119 ASP n 1 120 VAL n 1 121 GLN n 1 122 ALA n 1 123 TRP n 1 124 ILE n 1 125 ARG n 1 126 GLY n 1 127 CYS n 1 128 ARG n 1 129 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name CHICKEN _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue 'EGG WHITE' _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'GALLUS GALLUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9031 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code LYSC_CHICK _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession P00698 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9LYZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 129 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00698 _struct_ref_seq.db_align_beg 19 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 129 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMU 'D-saccharide, beta linking' . 'N-acetyl-beta-muramic acid' ? 'C11 H19 N O8' 293.270 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 9LYZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 9LYZ _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.50 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.230 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;THIS ENTRY ORIGINALLY CONTAINED ONLY THE COORDINATES OF THE THREE SUGARS. IN ORDER TO BRING COMPLETENESS TO THE STRUCTURE, THE ENTRY HAS BEEN REMEDIATED BY MERGING THE COORDINATES OF THE POLYMER CHAIN AND WATER FROM THE RELATED ENTRY 6LYZ. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1001 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 53 _refine_hist.number_atoms_solvent 101 _refine_hist.number_atoms_total 1155 _refine_hist.d_res_high 2.50 _refine_hist.d_res_low . # _struct.entry_id 9LYZ _struct.title 'X-RAY CRYSTALLOGRAPHY OF THE BINDING OF THE BACTERIAL CELL WALL TRISACCHARIDE NAM-NAG-NAM TO LYSOZYME' _struct.pdbx_descriptor 'HEN EGG WHITE LYSOZYME (E.C.3.2.1.17)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 9LYZ _struct_keywords.pdbx_keywords 'HYDROLASE (O-GLYCOSYL)' _struct_keywords.text 'HYDROLASE (O-GLYCOSYL)' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 4 ? HIS A 15 ? GLY A 4 HIS A 15 1 ? 12 HELX_P HELX_P2 2 ASN A 19 ? TYR A 23 ? ASN A 19 TYR A 23 5 ? 5 HELX_P HELX_P3 3 SER A 24 ? ASN A 37 ? SER A 24 ASN A 37 1 ? 14 HELX_P HELX_P4 4 PRO A 79 ? SER A 85 ? PRO A 79 SER A 85 5 ? 7 HELX_P HELX_P5 5 ILE A 88 ? ASP A 101 ? ILE A 88 ASP A 101 1 ? 14 HELX_P HELX_P6 6 ASN A 103 ? ALA A 107 ? ASN A 103 ALA A 107 5 ? 5 HELX_P HELX_P7 7 TRP A 108 ? CYS A 115 ? TRP A 108 CYS A 115 1 ? 8 HELX_P HELX_P8 8 ASP A 119 ? ILE A 124 ? ASP A 119 ILE A 124 5 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 6 SG ? ? ? 1_555 A CYS 127 SG ? ? A CYS 6 A CYS 127 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 30 SG ? ? ? 1_555 A CYS 115 SG ? ? A CYS 30 A CYS 115 1_555 ? ? ? ? ? ? ? 2.042 ? ? disulf3 disulf ? ? A CYS 64 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 64 A CYS 80 1_555 ? ? ? ? ? ? ? 2.005 ? ? disulf4 disulf ? ? A CYS 76 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 76 A CYS 94 1_555 ? ? ? ? ? ? ? 2.110 ? ? covale1 covale both ? B AMU . O4 ? ? ? 1_555 B NAG . C1 ? ? B AMU 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.436 ? ? covale2 covale both ? B NAG . O4 ? ? ? 1_555 B AMU . C1 ? ? B NAG 2 B AMU 3 1_555 ? ? ? ? ? ? ? 1.416 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 43 ? ARG A 45 ? THR A 43 ARG A 45 A 2 THR A 51 ? TYR A 53 ? THR A 51 TYR A 53 A 3 ILE A 58 ? ASN A 59 ? ILE A 58 ASN A 59 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ASN A 44 ? N ASN A 44 O ASP A 52 ? O ASP A 52 A 2 3 N TYR A 53 ? N TYR A 53 O ILE A 58 ? O ILE A 58 # _database_PDB_matrix.entry_id 9LYZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 9LYZ _atom_sites.fract_transf_matrix[1][1] 0.012663 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012663 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026144 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LYS 1 1 1 LYS LYS A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 CYS 6 6 6 CYS CYS A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 ARG 14 14 14 ARG ARG A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 GLY 22 22 22 GLY GLY A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 TRP 28 28 28 TRP TRP A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 CYS 30 30 30 CYS CYS A . n A 1 31 ALA 31 31 31 ALA ALA A . n A 1 32 ALA 32 32 32 ALA ALA A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 PHE 34 34 34 PHE PHE A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 ASN 44 44 44 ASN ASN A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 ASN 46 46 46 ASN ASN A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 ASP 48 48 48 ASP ASP A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 SER 50 50 50 SER SER A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 GLN 57 57 57 GLN GLN A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ASN 59 59 59 ASN ASN A . n A 1 60 SER 60 60 60 SER SER A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 TRP 62 62 62 TRP TRP A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 CYS 64 64 64 CYS CYS A . n A 1 65 ASN 65 65 65 ASN ASN A . n A 1 66 ASP 66 66 66 ASP ASP A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ARG 73 73 73 ARG ARG A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 CYS 76 76 76 CYS CYS A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 SER 81 81 81 SER SER A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 ASP 87 87 87 ASP ASP A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 SER 91 91 91 SER SER A . n A 1 92 VAL 92 92 92 VAL VAL A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 ALA 95 95 95 ALA ALA A . n A 1 96 LYS 96 96 96 LYS LYS A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 VAL 99 99 99 VAL VAL A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ASP 101 101 101 ASP ASP A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLY 104 104 104 GLY GLY A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 ASN 106 106 106 ASN ASN A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TRP 108 108 108 TRP TRP A . n A 1 109 VAL 109 109 109 VAL VAL A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 CYS 115 115 115 CYS CYS A . n A 1 116 LYS 116 116 116 LYS LYS A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 ASP 119 119 119 ASP ASP A . n A 1 120 VAL 120 120 120 VAL VAL A . n A 1 121 GLN 121 121 121 GLN GLN A . n A 1 122 ALA 122 122 122 ALA ALA A . n A 1 123 TRP 123 123 123 TRP TRP A . n A 1 124 ILE 124 124 124 ILE ILE A . n A 1 125 ARG 125 125 125 ARG ARG A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 CYS 127 127 127 CYS CYS A . n A 1 128 ARG 128 128 128 ARG ARG A . n A 1 129 LEU 129 129 129 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 130 130 HOH HOH A . C 3 HOH 2 131 131 HOH HOH A . C 3 HOH 3 132 132 HOH HOH A . C 3 HOH 4 133 133 HOH HOH A . C 3 HOH 5 134 134 HOH HOH A . C 3 HOH 6 135 135 HOH HOH A . C 3 HOH 7 136 136 HOH HOH A . C 3 HOH 8 137 137 HOH HOH A . C 3 HOH 9 138 138 HOH HOH A A C 3 HOH 10 139 139 HOH HOH A . C 3 HOH 11 140 140 HOH HOH A . C 3 HOH 12 141 141 HOH HOH A . C 3 HOH 13 142 142 HOH HOH A . C 3 HOH 14 143 143 HOH HOH A . C 3 HOH 15 144 144 HOH HOH A . C 3 HOH 16 145 145 HOH HOH A . C 3 HOH 17 146 146 HOH HOH A . C 3 HOH 18 147 147 HOH HOH A . C 3 HOH 19 148 148 HOH HOH A . C 3 HOH 20 149 149 HOH HOH A . C 3 HOH 21 150 150 HOH HOH A . C 3 HOH 22 151 151 HOH HOH A . C 3 HOH 23 152 152 HOH HOH A . C 3 HOH 24 153 153 HOH HOH A . C 3 HOH 25 154 154 HOH HOH A . C 3 HOH 26 155 155 HOH HOH A A C 3 HOH 27 156 156 HOH HOH A . C 3 HOH 28 157 157 HOH HOH A . C 3 HOH 29 158 158 HOH HOH A . C 3 HOH 30 159 159 HOH HOH A . C 3 HOH 31 160 160 HOH HOH A . C 3 HOH 32 161 161 HOH HOH A . C 3 HOH 33 162 162 HOH HOH A . C 3 HOH 34 163 163 HOH HOH A . C 3 HOH 35 164 164 HOH HOH A . C 3 HOH 36 165 165 HOH HOH A . C 3 HOH 37 166 166 HOH HOH A . C 3 HOH 38 167 167 HOH HOH A . C 3 HOH 39 168 168 HOH HOH A . C 3 HOH 40 169 169 HOH HOH A . C 3 HOH 41 170 170 HOH HOH A . C 3 HOH 42 171 171 HOH HOH A . C 3 HOH 43 172 172 HOH HOH A . C 3 HOH 44 173 173 HOH HOH A . C 3 HOH 45 174 174 HOH HOH A . C 3 HOH 46 175 175 HOH HOH A . C 3 HOH 47 176 176 HOH HOH A . C 3 HOH 48 177 177 HOH HOH A . C 3 HOH 49 178 178 HOH HOH A . C 3 HOH 50 179 179 HOH HOH A . C 3 HOH 51 180 180 HOH HOH A . C 3 HOH 52 181 181 HOH HOH A . C 3 HOH 53 182 182 HOH HOH A . C 3 HOH 54 183 183 HOH HOH A . C 3 HOH 55 184 184 HOH HOH A . C 3 HOH 56 185 185 HOH HOH A . C 3 HOH 57 186 186 HOH HOH A . C 3 HOH 58 187 187 HOH HOH A A C 3 HOH 59 188 188 HOH HOH A . C 3 HOH 60 189 189 HOH HOH A . C 3 HOH 61 190 190 HOH HOH A . C 3 HOH 62 191 191 HOH HOH A . C 3 HOH 63 192 192 HOH HOH A . C 3 HOH 64 193 193 HOH HOH A . C 3 HOH 65 194 194 HOH HOH A . C 3 HOH 66 195 195 HOH HOH A . C 3 HOH 67 196 196 HOH HOH A . C 3 HOH 68 197 197 HOH HOH A . C 3 HOH 69 198 198 HOH HOH A A C 3 HOH 70 199 199 HOH HOH A . C 3 HOH 71 200 200 HOH HOH A . C 3 HOH 72 201 201 HOH HOH A . C 3 HOH 73 202 202 HOH HOH A . C 3 HOH 74 203 203 HOH HOH A . C 3 HOH 75 204 204 HOH HOH A . C 3 HOH 76 205 205 HOH HOH A . C 3 HOH 77 206 206 HOH HOH A . C 3 HOH 78 207 207 HOH HOH A . C 3 HOH 79 208 208 HOH HOH A . C 3 HOH 80 209 209 HOH HOH A . C 3 HOH 81 210 210 HOH HOH A . C 3 HOH 82 211 211 HOH HOH A . C 3 HOH 83 212 212 HOH HOH A . C 3 HOH 84 213 213 HOH HOH A . C 3 HOH 85 214 214 HOH HOH A . C 3 HOH 86 215 215 HOH HOH A . C 3 HOH 87 216 216 HOH HOH A . C 3 HOH 88 217 217 HOH HOH A . C 3 HOH 89 218 218 HOH HOH A . C 3 HOH 90 219 219 HOH HOH A . C 3 HOH 91 220 220 HOH HOH A . C 3 HOH 92 221 221 HOH HOH A . C 3 HOH 93 222 222 HOH HOH A . C 3 HOH 94 223 223 HOH HOH A . C 3 HOH 95 224 224 HOH HOH A . C 3 HOH 96 225 225 HOH HOH A . C 3 HOH 97 226 226 HOH HOH A . C 3 HOH 98 227 227 HOH HOH A . C 3 HOH 99 228 228 HOH HOH A . C 3 HOH 100 229 229 HOH HOH A . C 3 HOH 101 230 230 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1980-02-27 2 'Structure model' 1 1 2011-06-03 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2011-07-27 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' 4 4 'Structure model' Other 5 5 'Structure model' Advisory 6 5 'Structure model' 'Atomic model' 7 5 'Structure model' 'Data collection' 8 5 'Structure model' 'Derived calculations' 9 5 'Structure model' Other 10 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp 3 5 'Structure model' entity 4 5 'Structure model' pdbx_branch_scheme 5 5 'Structure model' pdbx_chem_comp_identifier 6 5 'Structure model' pdbx_database_status 7 5 'Structure model' pdbx_entity_branch 8 5 'Structure model' pdbx_entity_branch_descriptor 9 5 'Structure model' pdbx_entity_branch_link 10 5 'Structure model' pdbx_entity_branch_list 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' pdbx_nonpoly_scheme 13 5 'Structure model' pdbx_struct_assembly_gen 14 5 'Structure model' pdbx_validate_close_contact 15 5 'Structure model' pdbx_validate_symm_contact 16 5 'Structure model' struct_asym 17 5 'Structure model' struct_conn 18 5 'Structure model' struct_site 19 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.Cartn_x' 2 5 'Structure model' '_atom_site.Cartn_y' 3 5 'Structure model' '_atom_site.Cartn_z' 4 5 'Structure model' '_atom_site.auth_asym_id' 5 5 'Structure model' '_atom_site.auth_atom_id' 6 5 'Structure model' '_atom_site.auth_comp_id' 7 5 'Structure model' '_atom_site.auth_seq_id' 8 5 'Structure model' '_atom_site.label_asym_id' 9 5 'Structure model' '_atom_site.label_atom_id' 10 5 'Structure model' '_atom_site.label_comp_id' 11 5 'Structure model' '_atom_site.label_entity_id' 12 5 'Structure model' '_atom_site.type_symbol' 13 5 'Structure model' '_chem_comp.name' 14 5 'Structure model' '_chem_comp.type' 15 5 'Structure model' '_pdbx_database_status.process_site' 16 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 17 5 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_1' 18 5 'Structure model' '_pdbx_validate_close_contact.auth_asym_id_2' 19 5 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_1' 20 5 'Structure model' '_pdbx_validate_close_contact.auth_seq_id_2' 21 5 'Structure model' '_pdbx_validate_symm_contact.auth_asym_id_2' 22 5 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_2' 23 5 'Structure model' '_struct_conn.pdbx_dist_value' 24 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C8 B NAG 2 ? ? O A HOH 199 ? ? 0.78 2 1 O A LYS 97 ? ? OD1 A ASP 101 ? ? 1.01 3 1 C7 B NAG 2 ? ? O A HOH 199 ? ? 1.08 4 1 C3 B AMU 3 ? ? O A HOH 221 ? ? 1.15 5 1 O3 B AMU 3 ? ? O A HOH 221 ? ? 1.32 6 1 C6 B AMU 1 ? ? O A HOH 197 ? ? 1.42 7 1 O A LYS 97 ? ? CG A ASP 101 ? ? 1.47 8 1 NE2 A GLN 121 ? ? O A HOH 144 ? ? 1.57 9 1 OE1 A GLN 121 ? ? O A HOH 143 ? ? 1.60 10 1 O4 B AMU 1 ? ? O A HOH 198 A ? 1.63 11 1 CD A GLN 121 ? ? O A HOH 143 ? ? 1.64 12 1 NH1 A ARG 5 ? ? O A TRP 123 ? ? 1.70 13 1 O A LYS 97 ? ? OD2 A ASP 101 ? ? 1.70 14 1 O6 B AMU 1 ? ? O A HOH 200 ? ? 1.73 15 1 NH1 A ARG 45 ? ? NH1 A ARG 68 ? ? 1.74 16 1 C2 B AMU 3 ? ? O A HOH 212 ? ? 1.76 17 1 NH2 A ARG 5 ? ? O A ARG 125 ? ? 1.77 18 1 O3 B AMU 1 ? ? O A HOH 207 ? ? 1.82 19 1 C6 B AMU 1 ? ? O A HOH 200 ? ? 1.85 20 1 C5 B AMU 1 ? ? O A HOH 201 ? ? 1.85 21 1 C5 B AMU 1 ? ? O A HOH 197 ? ? 1.87 22 1 O7 B NAG 2 ? ? O A HOH 206 ? ? 1.88 23 1 C5 B AMU 1 ? ? O A HOH 200 ? ? 1.92 24 1 O5 B AMU 1 ? ? O A HOH 200 ? ? 1.92 25 1 C2 B NAG 2 ? ? O A HOH 198 A ? 1.92 26 1 N2 B NAG 2 ? ? O A HOH 199 ? ? 1.96 27 1 O A ALA 107 ? ? N2 B NAG 2 ? ? 2.00 28 1 O7 B AMU 3 ? ? O A HOH 212 ? ? 2.01 29 1 N2 B NAG 2 ? ? O A HOH 198 A ? 2.04 30 1 O7 B NAG 2 ? ? O A HOH 199 ? ? 2.05 31 1 OD1 A ASP 87 ? ? OG1 A THR 89 ? ? 2.08 32 1 O A HOH 186 ? ? O A HOH 187 A ? 2.08 33 1 O11 B AMU 1 ? ? O A HOH 202 ? ? 2.09 34 1 NE A ARG 21 ? ? O A HOH 217 ? ? 2.10 35 1 O4 B AMU 1 ? ? O A HOH 201 ? ? 2.10 36 1 O A ILE 98 ? ? OD2 A ASP 101 ? ? 2.11 37 1 C8 B AMU 1 ? ? O A HOH 202 ? ? 2.11 38 1 O A HOH 226 ? ? O A HOH 227 ? ? 2.12 39 1 C1 B NAG 2 ? ? O A HOH 198 A ? 2.12 40 1 O A HOH 161 ? ? O A HOH 163 ? ? 2.12 41 1 O A THR 69 ? ? O A HOH 222 ? ? 2.13 42 1 O A HOH 156 ? ? O A HOH 157 ? ? 2.13 43 1 CG1 A VAL 109 ? ? O A HOH 200 ? ? 2.13 44 1 OG A SER 24 ? ? O A HOH 153 ? ? 2.15 45 1 C4 B AMU 1 ? ? O A HOH 201 ? ? 2.16 46 1 C A LYS 97 ? ? OD1 A ASP 101 ? ? 2.16 47 1 O A HOH 159 ? ? O A HOH 160 ? ? 2.18 48 1 O5 B NAG 2 ? ? O A HOH 207 ? ? 2.18 49 1 C4 B AMU 3 ? ? O A HOH 221 ? ? 2.18 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 141 ? ? 1_555 O A HOH 185 ? ? 8_555 0.19 2 1 O A HOH 138 A ? 1_555 O A HOH 220 ? ? 4_454 0.32 3 1 O A HOH 193 ? ? 1_555 O A HOH 213 ? ? 6_456 0.40 4 1 CZ A ARG 125 ? ? 1_555 C8 B AMU 3 ? ? 4_454 0.56 5 1 CD A ARG 128 ? ? 1_555 O A HOH 186 ? ? 8_555 0.61 6 1 NH2 A ARG 125 ? ? 1_555 C8 B AMU 3 ? ? 4_454 1.05 7 1 NH1 A ARG 125 ? ? 1_555 C8 B AMU 3 ? ? 4_454 1.28 8 1 NH2 A ARG 125 ? ? 1_555 C7 B AMU 3 ? ? 4_454 1.36 9 1 CZ A ARG 125 ? ? 1_555 C7 B AMU 3 ? ? 4_454 1.57 10 1 NH2 A ARG 21 ? ? 1_555 C8 B AMU 1 ? ? 4_455 1.62 11 1 NE A ARG 128 ? ? 1_555 O A HOH 186 ? ? 8_555 1.64 12 1 CG A ARG 128 ? ? 1_555 O A HOH 186 ? ? 8_555 1.74 13 1 NH2 A ARG 125 ? ? 1_555 C11 B AMU 3 ? ? 4_454 1.74 14 1 NE A ARG 125 ? ? 1_555 C8 B AMU 3 ? ? 4_454 1.89 15 1 NH2 A ARG 125 ? ? 1_555 N2 B AMU 3 ? ? 4_454 2.01 16 1 NH1 A ARG 125 ? ? 1_555 C7 B AMU 3 ? ? 4_454 2.13 17 1 CB A ARG 128 ? ? 1_555 O A HOH 187 A ? 8_555 2.15 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CG A ASN 19 ? ? OD1 A ASN 19 ? ? 1.389 1.235 0.154 0.022 N 2 1 CG A ASN 27 ? ? OD1 A ASN 27 ? ? 1.388 1.235 0.153 0.022 N 3 1 NE1 A TRP 28 ? ? CE2 A TRP 28 ? ? 1.274 1.371 -0.097 0.013 N 4 1 CA A CYS 30 ? ? CB A CYS 30 ? ? 1.371 1.526 -0.155 0.013 N 5 1 CG A ASN 37 ? ? OD1 A ASN 37 ? ? 1.388 1.235 0.153 0.022 N 6 1 CG A ASN 39 ? ? OD1 A ASN 39 ? ? 1.388 1.235 0.153 0.022 N 7 1 CG A ASN 44 ? ? OD1 A ASN 44 ? ? 1.389 1.235 0.154 0.022 N 8 1 CG A ASN 46 ? ? OD1 A ASN 46 ? ? 1.390 1.235 0.155 0.022 N 9 1 CG A ASP 48 ? ? OD1 A ASP 48 ? ? 1.389 1.249 0.140 0.023 N 10 1 CG A ASN 59 ? ? OD1 A ASN 59 ? ? 1.389 1.235 0.154 0.022 N 11 1 NE1 A TRP 62 ? ? CE2 A TRP 62 ? ? 1.276 1.371 -0.095 0.013 N 12 1 NE1 A TRP 63 ? ? CE2 A TRP 63 ? ? 1.275 1.371 -0.096 0.013 N 13 1 CA A CYS 64 ? ? CB A CYS 64 ? ? 1.686 1.535 0.151 0.022 N 14 1 CG A ASP 66 ? ? OD1 A ASP 66 ? ? 1.390 1.249 0.141 0.023 N 15 1 CG A ASN 77 ? ? OD1 A ASN 77 ? ? 1.389 1.235 0.154 0.022 N 16 1 CG A ASN 93 ? ? OD1 A ASN 93 ? ? 1.389 1.235 0.154 0.022 N 17 1 CG A ASN 106 ? ? OD1 A ASN 106 ? ? 1.390 1.235 0.155 0.022 N 18 1 NE1 A TRP 108 ? ? CE2 A TRP 108 ? ? 1.276 1.371 -0.095 0.013 N 19 1 NE1 A TRP 111 ? ? CE2 A TRP 111 ? ? 1.275 1.371 -0.096 0.013 N 20 1 NE1 A TRP 123 ? ? CE2 A TRP 123 ? ? 1.274 1.371 -0.097 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A CYS 6 ? ? CB A CYS 6 ? ? SG A CYS 6 ? ? 128.07 114.20 13.87 1.10 N 2 1 CB A ASP 18 ? ? CG A ASP 18 ? ? OD1 A ASP 18 ? ? 124.87 118.30 6.57 0.90 N 3 1 CB A ASP 48 ? ? CG A ASP 48 ? ? OD2 A ASP 48 ? ? 124.86 118.30 6.56 0.90 N 4 1 CB A ASP 52 ? ? CG A ASP 52 ? ? OD1 A ASP 52 ? ? 124.86 118.30 6.56 0.90 N 5 1 N A TRP 62 ? ? CA A TRP 62 ? ? C A TRP 62 ? ? 127.70 111.00 16.70 2.70 N 6 1 CA A TRP 63 ? ? CB A TRP 63 ? ? CG A TRP 63 ? ? 100.78 113.70 -12.92 1.90 N 7 1 CB A ASP 66 ? ? CG A ASP 66 ? ? OD2 A ASP 66 ? ? 124.88 118.30 6.58 0.90 N 8 1 N A PRO 70 ? ? CA A PRO 70 ? ? C A PRO 70 ? ? 136.96 112.10 24.86 2.60 N 9 1 CB A SER 72 ? ? CA A SER 72 ? ? C A SER 72 ? ? 97.31 110.10 -12.79 1.90 N 10 1 N A SER 72 ? ? CA A SER 72 ? ? C A SER 72 ? ? 131.67 111.00 20.67 2.70 N 11 1 N A ARG 73 ? ? CA A ARG 73 ? ? C A ARG 73 ? ? 89.85 111.00 -21.15 2.70 N 12 1 N A CYS 76 ? ? CA A CYS 76 ? ? CB A CYS 76 ? ? 128.26 110.80 17.46 1.50 N 13 1 CA A CYS 76 ? ? CB A CYS 76 ? ? SG A CYS 76 ? ? 126.29 114.20 12.09 1.10 N 14 1 N A PRO 79 ? ? CA A PRO 79 ? ? C A PRO 79 ? ? 94.38 112.10 -17.72 2.60 N 15 1 CB A ASP 87 ? ? CG A ASP 87 ? ? OD1 A ASP 87 ? ? 124.86 118.30 6.56 0.90 N 16 1 CB A ASP 101 ? ? CG A ASP 101 ? ? OD1 A ASP 101 ? ? 124.85 118.30 6.55 0.90 N 17 1 N A GLY 102 ? ? CA A GLY 102 ? ? C A GLY 102 ? ? 130.93 113.10 17.83 2.50 N 18 1 CA A TRP 111 ? ? CB A TRP 111 ? ? CG A TRP 111 ? ? 96.83 113.70 -16.87 1.90 N 19 1 N A CYS 115 ? ? CA A CYS 115 ? ? CB A CYS 115 ? ? 121.87 110.80 11.07 1.50 N 20 1 N A THR 118 ? ? CA A THR 118 ? ? C A THR 118 ? ? 81.98 111.00 -29.02 2.70 N 21 1 CB A ASP 119 ? ? CG A ASP 119 ? ? OD1 A ASP 119 ? ? 124.87 118.30 6.57 0.90 N 22 1 N A ASP 119 ? ? CA A ASP 119 ? ? C A ASP 119 ? ? 93.48 111.00 -17.52 2.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 19 ? ? 59.86 14.81 2 1 ARG A 21 ? ? 51.63 15.89 3 1 PHE A 38 ? ? 58.91 19.20 4 1 SER A 72 ? ? -16.63 109.98 5 1 CYS A 115 ? ? -122.37 -58.11 6 1 LYS A 116 ? ? -38.41 116.68 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 SER _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 100 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 101 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -144.44 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ARG A 5 ? ? 0.163 'SIDE CHAIN' 2 1 ARG A 14 ? ? 0.086 'SIDE CHAIN' 3 1 ARG A 114 ? ? 0.125 'SIDE CHAIN' # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 AMU 1 B AMU 1 A AMU 1003 n B 2 NAG 2 B NAG 2 A NAG 1002 n B 2 AMU 3 B AMU 3 A AMU 1001 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier AMU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc3 AMU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 MurNAc NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 MurNAc1-4DGlcpNAcb1-4MurNAc1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O_3*OC^RCO/4=O/3C][a2122h-1b_1-5_2*NCC/3=O]/1-2-1/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[][b-D-GlcpNAc]{[(3+1)][<C3O2>]{}[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(3+1)][<C3O2>]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 AMU O4 HO4 sing ? 2 2 3 AMU C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 AMU 1 n 2 NAG 2 n 2 AMU 3 n # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #