HEADER OXIDOREDUCTASE 25-FEB-25 9M0V TITLE CRYSTAL STRUCTURE OF GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE IN COMPLEX TITLE 2 FROM BACILLUS SUBTILIS WITH FORMATE AND NADPH AT NEAR-ATOMIC TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE 2-KETOGLUCONATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE,2KR; COMPND 5 EC: 1.1.1.215; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: THE PROTEIN SEQUENCES WERE MODIFIED TO INCLUDE TWO COMPND 8 AMINO ACIDS DERIVED FROM THE XHOI RESTRICTION ENZYME RECOGNITION COMPND 9 SITE, FOLLOWED BY A HEXAHISTIDINE TAG AT THE C-TERMINAL END. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: YVCT, BSU34680; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYOXYLATE REDUCTASE, HYDROXYPYRUVATE REDUCTASE, BACILLUS SUBTILIS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.Q.NGUYEN,W.KANG REVDAT 1 21-JAN-26 9M0V 0 JRNL AUTH T.Q.NGUYEN,T.H.DUONG,J.K.YANG,W.KANG JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF GLYOXYLATE JRNL TITL 2 REDUCTASE/HYDROXYPYRUVATE REDUCTASE FROM BACILLUS SUBTILIS JRNL REF CRYSTALS V. 15 298 2025 JRNL REFN ESSN 2073-4352 JRNL DOI 10.3390/CRYST15040298 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 50704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.940 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7800 - 3.6100 0.98 3542 146 0.1412 0.1774 REMARK 3 2 3.6100 - 2.8700 0.99 3530 144 0.1502 0.1660 REMARK 3 3 2.8700 - 2.5100 0.97 3409 140 0.1642 0.2319 REMARK 3 4 2.5100 - 2.2800 0.99 3498 144 0.1557 0.2020 REMARK 3 5 2.2800 - 2.1100 1.00 3516 145 0.1447 0.1702 REMARK 3 6 2.1100 - 1.9900 1.00 3533 144 0.1579 0.1873 REMARK 3 7 1.9900 - 1.8900 0.97 3422 141 0.1570 0.1789 REMARK 3 8 1.8900 - 1.8100 0.98 3478 143 0.1671 0.2489 REMARK 3 9 1.8100 - 1.7400 0.99 3480 143 0.1915 0.2307 REMARK 3 10 1.7400 - 1.6800 0.99 3453 142 0.2076 0.2724 REMARK 3 11 1.6800 - 1.6300 0.99 3502 144 0.2096 0.2506 REMARK 3 12 1.6300 - 1.5800 0.99 3486 143 0.2253 0.2314 REMARK 3 13 1.5800 - 1.5400 0.97 3409 140 0.2469 0.2959 REMARK 3 14 1.5400 - 1.5000 0.98 3446 141 0.2647 0.3196 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.163 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.455 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2773 REMARK 3 ANGLE : 0.965 3767 REMARK 3 CHIRALITY : 0.059 420 REMARK 3 PLANARITY : 0.010 487 REMARK 3 DIHEDRAL : 8.257 374 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.7378 38.2034 12.0361 REMARK 3 T TENSOR REMARK 3 T11: 0.1220 T22: 0.1849 REMARK 3 T33: 0.1703 T12: -0.0414 REMARK 3 T13: -0.0033 T23: -0.0416 REMARK 3 L TENSOR REMARK 3 L11: 4.5979 L22: 4.6846 REMARK 3 L33: 5.5174 L12: -0.5957 REMARK 3 L13: -1.0570 L23: 0.4054 REMARK 3 S TENSOR REMARK 3 S11: -0.0643 S12: -0.2352 S13: -0.0656 REMARK 3 S21: 0.1228 S22: -0.0332 S23: 0.1193 REMARK 3 S31: 0.3388 S32: -0.0401 S33: 0.0773 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 60 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3875 42.3619 15.4611 REMARK 3 T TENSOR REMARK 3 T11: 0.0879 T22: 0.1086 REMARK 3 T33: 0.0834 T12: -0.0167 REMARK 3 T13: 0.0400 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 2.4867 L22: 0.7455 REMARK 3 L33: 2.3395 L12: -0.7787 REMARK 3 L13: 1.9728 L23: -0.5594 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.1034 S13: -0.0243 REMARK 3 S21: -0.0616 S22: -0.0444 S23: 0.0491 REMARK 3 S31: 0.0740 S32: -0.0235 S33: 0.0548 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.0616 48.7795 14.2863 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.1062 REMARK 3 T33: 0.0988 T12: -0.0062 REMARK 3 T13: 0.0102 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.9542 L22: 0.9190 REMARK 3 L33: 1.9400 L12: -0.0452 REMARK 3 L13: 0.0640 L23: 0.1682 REMARK 3 S TENSOR REMARK 3 S11: -0.0254 S12: 0.0383 S13: 0.0280 REMARK 3 S21: -0.0526 S22: -0.0165 S23: 0.0074 REMARK 3 S31: -0.0779 S32: 0.0458 S33: 0.0395 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4914 44.7165 14.3897 REMARK 3 T TENSOR REMARK 3 T11: 0.1119 T22: 0.0875 REMARK 3 T33: 0.1139 T12: -0.0526 REMARK 3 T13: 0.0042 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 4.1897 L22: 1.4792 REMARK 3 L33: 1.2926 L12: -2.0247 REMARK 3 L13: 0.9527 L23: -0.4343 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: -0.0229 S13: 0.0372 REMARK 3 S21: -0.0455 S22: -0.0591 S23: 0.0688 REMARK 3 S31: -0.0081 S32: -0.1241 S33: 0.0911 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9M0V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-25. REMARK 100 THE DEPOSITION ID IS D_1300056966. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50733 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 49.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM FORMATE, 20% (W/V) PEG REMARK 280 (POLYETHYLENE GLYCOL) 3350, 0.1M HEPES (PH 6.5), 5% (V/V) REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 46.63600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.61650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 46.63600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.61650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.00130 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.84846 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 401 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 731 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 766 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 824 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 830 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 50 -159.29 -136.22 REMARK 500 THR A 53 -74.36 -84.42 REMARK 500 TYR A 79 34.69 -147.97 REMARK 500 TYR A 99 -45.34 80.12 REMARK 500 ILE A 209 34.09 -140.36 REMARK 500 SER A 238 -99.99 -90.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 825 DISTANCE = 6.48 ANGSTROMS REMARK 525 HOH A 826 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH A 827 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 828 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 829 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH A 830 DISTANCE = 7.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 407 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 147 NE2 REMARK 620 2 ASP A 171 OD2 96.9 REMARK 620 3 HOH A 524 O 111.3 99.2 REMARK 620 4 HOH A 601 O 171.0 81.1 77.7 REMARK 620 5 HOH A 653 O 91.9 84.3 155.8 79.1 REMARK 620 6 HOH A 712 O 97.5 161.3 86.6 82.8 83.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 230 OD1 REMARK 620 2 HOH A 526 O 173.6 REMARK 620 3 HOH A 529 O 91.8 86.7 REMARK 620 4 HOH A 552 O 94.5 91.8 88.9 REMARK 620 5 HOH A 680 O 90.9 91.1 174.7 86.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 FMT A 402 O2 REMARK 620 2 FMT A 402 O2 85.7 REMARK 620 3 HOH A 598 O 90.9 89.2 REMARK 620 4 HOH A 598 O 89.2 90.9 179.8 REMARK 620 5 HOH A 620 O 92.3 177.8 90.1 89.8 REMARK 620 6 HOH A 620 O 177.8 92.3 89.8 90.1 89.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NAP A 404 O3X REMARK 620 2 HOH A 504 O 89.2 REMARK 620 3 HOH A 559 O 90.0 179.0 REMARK 620 4 HOH A 722 O 91.1 93.5 85.9 REMARK 620 5 HOH A 743 O 101.4 87.2 93.6 167.4 REMARK 620 6 HOH A 770 O 174.1 93.7 87.1 83.6 83.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 558 O REMARK 620 2 HOH A 647 O 89.6 REMARK 620 3 HOH A 742 O 104.2 90.8 REMARK 620 4 HOH A 752 O 84.9 96.5 168.3 REMARK 620 5 HOH A 758 O 104.4 166.0 87.0 83.6 REMARK 620 6 HOH A 821 O 169.3 94.0 85.8 84.7 72.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9M0T RELATED DB: PDB DBREF 9M0V A 2 324 UNP O32264 TKRA_BACSU 3 325 SEQADV 9M0V MET A 1 UNP O32264 INITIATING METHIONINE SEQADV 9M0V LEU A 325 UNP O32264 EXPRESSION TAG SEQADV 9M0V GLU A 326 UNP O32264 EXPRESSION TAG SEQADV 9M0V HIS A 327 UNP O32264 EXPRESSION TAG SEQADV 9M0V HIS A 328 UNP O32264 EXPRESSION TAG SEQADV 9M0V HIS A 329 UNP O32264 EXPRESSION TAG SEQADV 9M0V HIS A 330 UNP O32264 EXPRESSION TAG SEQADV 9M0V HIS A 331 UNP O32264 EXPRESSION TAG SEQADV 9M0V HIS A 332 UNP O32264 EXPRESSION TAG SEQRES 1 A 332 MET LYS PRO PHE VAL PHE ILE THR LYS PRO ILE PRO GLU SEQRES 2 A 332 GLU ILE GLU ALA PHE ILE GLY GLU HIS CYS ARG TYR GLU SEQRES 3 A 332 VAL TRP GLN GLU ASP THR LEU PRO SER ASP VAL LEU PHE SEQRES 4 A 332 GLU LYS LEU LYS GLU ALA GLU GLY LEU LEU THR SER GLY SEQRES 5 A 332 THR SER GLY PRO SER ILE ASN ARG GLU LEU LEU GLU HIS SEQRES 6 A 332 ALA PRO LYS LEU LYS VAL VAL SER ASN GLN SER VAL GLY SEQRES 7 A 332 TYR ASP ASN PHE ASP ILE GLU ALA MET LYS GLU ARG GLY SEQRES 8 A 332 VAL VAL GLY THR HIS THR PRO TYR THR LEU ASP ASP THR SEQRES 9 A 332 VAL ALA ASP LEU ALA PHE SER LEU ILE LEU SER SER ALA SEQRES 10 A 332 ARG ARG VAL ALA GLU LEU ASP ARG PHE VAL ARG ALA GLY SEQRES 11 A 332 LYS TRP GLY THR VAL GLU GLU GLU ALA LEU PHE GLY ILE SEQRES 12 A 332 ASP VAL HIS HIS GLN THR LEU GLY ILE ILE GLY MET GLY SEQRES 13 A 332 ARG ILE GLY GLU GLN ALA ALA ARG ARG ALA LYS PHE GLY SEQRES 14 A 332 PHE ASP MET GLU VAL LEU TYR HIS ASN ARG HIS ARG LYS SEQRES 15 A 332 GLN GLU THR GLU ASP SER ILE GLY VAL LYS TYR ALA GLU SEQRES 16 A 332 LEU ASP THR LEU LEU GLU GLN SER ASP PHE ILE LEU LEU SEQRES 17 A 332 ILE THR PRO LEU THR ASP GLU THR TYR HIS MET ILE GLY SEQRES 18 A 332 GLU ARG GLU PHE LYS LEU MET LYS ASN SER ALA ILE PHE SEQRES 19 A 332 VAL ASN ILE SER ARG GLY LYS THR VAL ASP GLU LYS ALA SEQRES 20 A 332 LEU ILE ARG ALA LEU GLN GLU GLY TRP ILE ARG GLY ALA SEQRES 21 A 332 GLY LEU ASP VAL TYR GLU LYS GLU PRO VAL THR GLN ASP SEQRES 22 A 332 ASN PRO LEU LEU GLN LEU ASP ASN VAL THR LEU LEU PRO SEQRES 23 A 332 HIS ILE GLY SER ALA THR ALA LYS VAL ARG PHE ASN MET SEQRES 24 A 332 CYS LYS GLN ALA ALA GLU ASN MET LEU ALA ALA ILE GLN SEQRES 25 A 332 GLY GLN THR PRO LYS ASN LEU THR ARG GLU PHE GLN LEU SEQRES 26 A 332 GLU HIS HIS HIS HIS HIS HIS HET MG A 401 1 HET FMT A 402 3 HET FMT A 403 3 HET NAP A 404 48 HET NA A 405 1 HET NA A 406 1 HET MG A 407 1 HET MG A 408 1 HETNAM MG MAGNESIUM ION HETNAM FMT FORMIC ACID HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM NA SODIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 2 MG 3(MG 2+) FORMUL 3 FMT 2(C H2 O2) FORMUL 5 NAP C21 H28 N7 O17 P3 FORMUL 6 NA 2(NA 1+) FORMUL 10 HOH *330(H2 O) HELIX 1 AA1 PRO A 12 CYS A 23 1 12 HELIX 2 AA2 PRO A 34 LYS A 43 1 10 HELIX 3 AA3 ASN A 59 HIS A 65 1 7 HELIX 4 AA4 ASP A 83 ARG A 90 1 8 HELIX 5 AA5 LEU A 101 ARG A 118 1 18 HELIX 6 AA6 ARG A 119 ALA A 129 1 11 HELIX 7 AA7 GLU A 136 PHE A 141 5 6 HELIX 8 AA8 GLY A 156 ASP A 171 1 16 HELIX 9 AA9 LYS A 182 GLY A 190 1 9 HELIX 10 AB1 GLU A 195 SER A 203 1 9 HELIX 11 AB2 GLY A 221 MET A 228 1 8 HELIX 12 AB3 ARG A 239 VAL A 243 5 5 HELIX 13 AB4 ASP A 244 GLY A 255 1 12 HELIX 14 AB5 ASN A 274 LEU A 279 5 6 HELIX 15 AB6 THR A 292 GLN A 312 1 21 HELIX 16 AB7 THR A 320 GLN A 324 5 5 SHEET 1 AA1 5 ARG A 24 VAL A 27 0 SHEET 2 AA1 5 PHE A 4 ILE A 7 1 N ILE A 7 O GLU A 26 SHEET 3 AA1 5 ALA A 45 THR A 50 1 O GLU A 46 N PHE A 4 SHEET 4 AA1 5 VAL A 71 ASN A 74 1 O SER A 73 N LEU A 48 SHEET 5 AA1 5 VAL A 93 THR A 95 1 O THR A 95 N ASN A 74 SHEET 1 AA2 7 LYS A 192 TYR A 193 0 SHEET 2 AA2 7 GLU A 173 HIS A 177 1 N VAL A 174 O LYS A 192 SHEET 3 AA2 7 THR A 149 ILE A 153 1 N LEU A 150 O GLU A 173 SHEET 4 AA2 7 PHE A 205 LEU A 208 1 O PHE A 205 N GLY A 151 SHEET 5 AA2 7 ILE A 233 ASN A 236 1 O VAL A 235 N ILE A 206 SHEET 6 AA2 7 GLY A 259 LEU A 262 1 O GLY A 261 N PHE A 234 SHEET 7 AA2 7 VAL A 282 LEU A 284 1 O THR A 283 N LEU A 262 LINK NE2 HIS A 147 MG MG A 407 1555 1555 1.91 LINK OD2AASP A 171 MG MG A 407 1555 1555 2.16 LINK OD1 ASN A 230 NA NA A 406 1555 1555 2.21 LINK MG MG A 401 O2 FMT A 402 1555 1555 2.10 LINK MG MG A 401 O2 FMT A 402 1555 2655 2.10 LINK MG MG A 401 O HOH A 598 1555 1555 2.04 LINK MG MG A 401 O HOH A 598 1555 2655 2.04 LINK MG MG A 401 O HOH A 620 1555 1555 2.05 LINK MG MG A 401 O HOH A 620 1555 2655 2.05 LINK O3X NAP A 404 NA NA A 405 1555 1555 2.03 LINK NA NA A 405 O HOH A 504 1555 1555 2.26 LINK NA NA A 405 O HOH A 559 1555 1555 2.28 LINK NA NA A 405 O HOH A 722 1555 1555 2.25 LINK NA NA A 405 O HOH A 743 1555 1555 2.14 LINK NA NA A 405 O HOH A 770 1555 1555 2.37 LINK NA NA A 406 O HOH A 526 1555 1555 2.26 LINK NA NA A 406 O HOH A 529 1555 1555 2.22 LINK NA NA A 406 O HOH A 552 1555 1555 2.19 LINK NA NA A 406 O HOH A 680 1555 3545 2.17 LINK MG MG A 407 O HOH A 524 1555 1555 2.08 LINK MG MG A 407 O HOH A 601 1555 1555 2.08 LINK MG MG A 407 O HOH A 653 1555 1555 2.08 LINK MG MG A 407 O HOH A 712 1555 1555 2.09 LINK MG MG A 408 O HOH A 558 1555 1555 2.08 LINK MG MG A 408 O HOH A 647 1555 3555 2.09 LINK MG MG A 408 O HOH A 742 1555 3555 2.06 LINK MG MG A 408 O HOH A 752 1555 1555 2.08 LINK MG MG A 408 O HOH A 758 1555 1555 2.06 LINK MG MG A 408 O HOH A 821 1555 3555 2.08 CISPEP 1 GLU A 268 PRO A 269 0 -2.39 CRYST1 93.272 59.233 59.738 90.00 99.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010721 0.000000 0.001871 0.00000 SCALE2 0.000000 0.016882 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016993 0.00000 CONECT 1179 2717 CONECT 1367 2717 CONECT 1881 2716 CONECT 2660 2663 2816 2838 CONECT 2661 2662 2663 CONECT 2662 2661 CONECT 2663 2660 2661 CONECT 2664 2665 2666 CONECT 2665 2664 CONECT 2666 2664 CONECT 2667 2668 2669 2670 2689 CONECT 2668 2667 CONECT 2669 2667 CONECT 2670 2667 2671 CONECT 2671 2670 2672 CONECT 2672 2671 2673 2674 CONECT 2673 2672 2678 CONECT 2674 2672 2675 2676 CONECT 2675 2674 CONECT 2676 2674 2677 2678 CONECT 2677 2676 2711 CONECT 2678 2673 2676 2679 CONECT 2679 2678 2680 2688 CONECT 2680 2679 2681 CONECT 2681 2680 2682 CONECT 2682 2681 2683 2688 CONECT 2683 2682 2684 2685 CONECT 2684 2683 CONECT 2685 2683 2686 CONECT 2686 2685 2687 CONECT 2687 2686 2688 CONECT 2688 2679 2682 2687 CONECT 2689 2667 2690 CONECT 2690 2689 2691 2692 2693 CONECT 2691 2690 CONECT 2692 2690 CONECT 2693 2690 2694 CONECT 2694 2693 2695 CONECT 2695 2694 2696 2697 CONECT 2696 2695 2701 CONECT 2697 2695 2698 2699 CONECT 2698 2697 CONECT 2699 2697 2700 2701 CONECT 2700 2699 CONECT 2701 2696 2699 2702 CONECT 2702 2701 2703 2710 CONECT 2703 2702 2704 CONECT 2704 2703 2705 2708 CONECT 2705 2704 2706 2707 CONECT 2706 2705 CONECT 2707 2705 CONECT 2708 2704 2709 CONECT 2709 2708 2710 CONECT 2710 2702 2709 CONECT 2711 2677 2712 2713 2714 CONECT 2712 2711 CONECT 2713 2711 CONECT 2714 2711 2715 CONECT 2715 2714 2722 2777 2940 CONECT 2715 2961 2988 CONECT 2716 1881 2744 2747 2770 CONECT 2717 1179 1367 2742 2819 CONECT 2717 2871 2930 CONECT 2718 2776 2970 2976 CONECT 2722 2715 CONECT 2742 2717 CONECT 2744 2716 CONECT 2747 2716 CONECT 2770 2716 CONECT 2776 2718 CONECT 2777 2715 CONECT 2816 2660 CONECT 2819 2717 CONECT 2838 2660 CONECT 2871 2717 CONECT 2930 2717 CONECT 2940 2715 CONECT 2961 2715 CONECT 2970 2718 CONECT 2976 2718 CONECT 2988 2715 MASTER 393 0 8 16 12 0 0 6 3005 1 81 26 END