HEADER LIGASE 06-MAR-25 9M5M TITLE CRYSTAL STRUCTURE OF PLASMODIUM VIVAX ASPARTYL-TRNA SYNTHETASE (PVDRS) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARTYL-TRNA SYNTHETASE; COMPND 5 EC: 6.1.1.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 GENE: PVC01_020016700, PVW1_020019400; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOACYLATION, AMINOACYL-TRNA SYNTHETASE, MALARIA, INHIBITOR, ATP- KEYWDS 2 BINDING, L-ASP, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR V.K.SHARMA,Y.MANICKAM,S.BAGALE,P.I.PRADEEPKUMAR,A.SHARMA REVDAT 2 30-JUL-25 9M5M 1 JRNL REVDAT 1 04-JUN-25 9M5M 0 JRNL AUTH N.KETPRASIT,C.W.TAI,V.K.SHARMA,Y.MANICKAM,Y.KHANDOKAR,X.YE, JRNL AUTH 2 C.DOGOVSKI,D.H.HILKO,C.J.MORTON,A.C.BRAUN,M.G.LEEMING, JRNL AUTH 3 B.SIDDHARAM,G.J.SHAMI,P.I.PRADEEPKUMAR,S.PANJIKAR, JRNL AUTH 4 S.A.POULSEN,M.D.W.GRIFFIN,A.SHARMA,L.TILLEY,S.C.XIE JRNL TITL NATURAL PRODUCT-MEDIATED REACTION HIJACKING MECHANISM JRNL TITL 2 VALIDATES PLASMODIUM ASPARTYL-TRNA SYNTHETASE AS AN JRNL TITL 3 ANTIMALARIAL DRUG TARGET. JRNL REF PLOS PATHOG. V. 21 13057 2025 JRNL REFN ESSN 1553-7374 JRNL PMID 40627786 JRNL DOI 10.1371/JOURNAL.PPAT.1013057 REMARK 2 REMARK 2 RESOLUTION. 2.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21.2_5419: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.06 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 97555 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 4843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 72.7900 - 6.4000 1.00 3416 205 0.1926 0.1873 REMARK 3 2 6.4000 - 5.0800 1.00 3257 173 0.1839 0.2259 REMARK 3 3 5.0800 - 4.4400 1.00 3225 151 0.1406 0.1725 REMARK 3 4 4.4400 - 4.0300 1.00 3178 155 0.1371 0.1467 REMARK 3 5 4.0300 - 3.7400 1.00 3169 153 0.1496 0.1678 REMARK 3 6 3.7400 - 3.5200 1.00 3155 150 0.1689 0.2134 REMARK 3 7 3.5200 - 3.3500 1.00 3107 178 0.1780 0.1964 REMARK 3 8 3.3500 - 3.2000 1.00 3110 180 0.1862 0.2362 REMARK 3 9 3.2000 - 3.0800 1.00 3123 162 0.1958 0.2303 REMARK 3 10 3.0800 - 2.9700 1.00 3122 148 0.1966 0.2158 REMARK 3 11 2.9700 - 2.8800 1.00 3092 176 0.1920 0.2574 REMARK 3 12 2.8800 - 2.8000 1.00 3112 154 0.1894 0.2158 REMARK 3 13 2.8000 - 2.7200 1.00 3096 169 0.1794 0.2214 REMARK 3 14 2.7200 - 2.6600 1.00 3106 144 0.1789 0.1993 REMARK 3 15 2.6600 - 2.6000 1.00 3070 156 0.1826 0.2114 REMARK 3 16 2.6000 - 2.5400 1.00 3087 184 0.2066 0.2667 REMARK 3 17 2.5400 - 2.4900 1.00 3077 151 0.2080 0.2460 REMARK 3 18 2.4900 - 2.4400 1.00 3078 181 0.2038 0.2963 REMARK 3 19 2.4400 - 2.4000 1.00 3060 167 0.2027 0.2310 REMARK 3 20 2.4000 - 2.3600 1.00 3069 166 0.2040 0.2155 REMARK 3 21 2.3600 - 2.3200 1.00 3063 182 0.2077 0.2613 REMARK 3 22 2.3200 - 2.2800 1.00 3063 166 0.2087 0.2617 REMARK 3 23 2.2800 - 2.2500 1.00 3069 141 0.2194 0.2454 REMARK 3 24 2.2500 - 2.2200 1.00 3076 166 0.2333 0.2480 REMARK 3 25 2.2200 - 2.1900 1.00 3045 168 0.2498 0.2635 REMARK 3 26 2.1900 - 2.1600 1.00 3053 152 0.2793 0.2672 REMARK 3 27 2.1600 - 2.1300 1.00 3068 138 0.3013 0.3243 REMARK 3 28 2.1300 - 2.1100 0.98 3038 155 0.3285 0.3590 REMARK 3 29 2.1100 - 2.0800 0.94 2898 128 0.3471 0.3820 REMARK 3 30 2.0800 - 2.0600 0.86 2630 144 0.3769 0.3782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 8263 REMARK 3 ANGLE : 0.847 11156 REMARK 3 CHIRALITY : 0.052 1216 REMARK 3 PLANARITY : 0.007 1431 REMARK 3 DIHEDRAL : 21.662 3048 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 18.0167 55.3233 13.7756 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.3180 REMARK 3 T33: 0.2839 T12: 0.0436 REMARK 3 T13: 0.0732 T23: 0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.8543 L22: 0.9953 REMARK 3 L33: 0.7316 L12: 0.1664 REMARK 3 L13: -0.1331 L23: 0.0960 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0498 S13: 0.0906 REMARK 3 S21: 0.1026 S22: -0.0036 S23: 0.0184 REMARK 3 S31: -0.1135 S32: 0.0452 S33: -0.0311 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 9M5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300057205. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98198 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.060 REMARK 200 RESOLUTION RANGE LOW (A) : 90.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 33.10 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.06 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 2.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE, 0.1M BIS-TRIS PH REMARK 280 6.5, 25% W/V PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.85300 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 181.70600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 136.27950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 227.13250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.42650 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 90.85300 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 181.70600 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 227.13250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 136.27950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 45.42650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 96 REMARK 465 GLU A 97 REMARK 465 LYS A 150 REMARK 465 VAL A 151 REMARK 465 GLY A 152 REMARK 465 GLY A 153 REMARK 465 SER A 154 REMARK 465 GLY A 155 REMARK 465 ALA A 156 REMARK 465 THR A 157 REMARK 465 ASP A 158 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 LYS A 161 REMARK 465 ARG A 162 REMARK 465 GLU A 163 REMARK 465 ASP A 164 REMARK 465 ASP A 165 REMARK 465 ALA A 166 REMARK 465 ALA A 167 REMARK 465 SER A 168 REMARK 465 HIS A 169 REMARK 465 SER A 170 REMARK 465 VAL A 171 REMARK 465 VAL A 172 REMARK 465 ALA A 173 REMARK 465 GLU A 174 REMARK 465 SER A 175 REMARK 465 ASN A 176 REMARK 465 GLY A 177 REMARK 465 ALA A 178 REMARK 465 SER A 351 REMARK 465 GLU A 352 REMARK 465 GLY A 353 REMARK 465 GLY A 354 REMARK 465 ALA B 96 REMARK 465 GLU B 97 REMARK 465 ARG B 98 REMARK 465 GLU B 99 REMARK 465 GLU B 133 REMARK 465 LYS B 134 REMARK 465 LYS B 150 REMARK 465 VAL B 151 REMARK 465 GLY B 152 REMARK 465 GLY B 153 REMARK 465 SER B 154 REMARK 465 GLY B 155 REMARK 465 ALA B 156 REMARK 465 THR B 157 REMARK 465 ASP B 158 REMARK 465 GLY B 159 REMARK 465 GLY B 160 REMARK 465 LYS B 161 REMARK 465 ARG B 162 REMARK 465 GLU B 163 REMARK 465 ASP B 164 REMARK 465 ASP B 165 REMARK 465 ALA B 166 REMARK 465 ALA B 167 REMARK 465 SER B 168 REMARK 465 HIS B 169 REMARK 465 SER B 170 REMARK 465 VAL B 171 REMARK 465 VAL B 172 REMARK 465 ALA B 173 REMARK 465 GLU B 174 REMARK 465 SER B 175 REMARK 465 ASN B 176 REMARK 465 GLY B 177 REMARK 465 ALA B 178 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 100 CG OD1 ND2 REMARK 470 LEU A 101 CG CD1 CD2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 LYS A 130 CE NZ REMARK 470 ASN A 132 CG OD1 ND2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 GLN A 182 CG CD OE1 NE2 REMARK 470 LYS A 219 CG CD CE NZ REMARK 470 GLU A 250 CG CD OE1 OE2 REMARK 470 VAL A 251 CG1 CG2 REMARK 470 LYS A 282 CE NZ REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 ARG A 396 CZ NH1 NH2 REMARK 470 GLU A 398 OE1 OE2 REMARK 470 LYS A 445 CE NZ REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 LYS A 489 NZ REMARK 470 GLU A 491 CG CD OE1 OE2 REMARK 470 ILE A 493 CG1 CG2 CD1 REMARK 470 LEU A 494 CG CD1 CD2 REMARK 470 ASN B 100 CG OD1 ND2 REMARK 470 LEU B 101 CG CD1 CD2 REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 GLU B 104 CG CD OE1 OE2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 VAL B 108 CG1 CG2 REMARK 470 LYS B 118 CE NZ REMARK 470 LYS B 128 CG CD CE NZ REMARK 470 LYS B 130 CE NZ REMARK 470 ASN B 132 CG OD1 ND2 REMARK 470 GLU B 135 CG CD OE1 OE2 REMARK 470 ARG B 137 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 179 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 182 CG CD OE1 NE2 REMARK 470 ARG B 195 CZ NH1 NH2 REMARK 470 LYS B 197 CG CD CE NZ REMARK 470 LEU B 200 CG CD1 CD2 REMARK 470 ILE B 218 CG1 CG2 CD1 REMARK 470 LYS B 219 CG CD CE NZ REMARK 470 ASP B 222 CG OD1 OD2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 LYS B 229 CG CD CE NZ REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 GLU B 250 CG CD OE1 OE2 REMARK 470 ILE B 253 CG1 CG2 CD1 REMARK 470 ASP B 254 CG OD1 OD2 REMARK 470 SER B 255 OG REMARK 470 ARG B 265 CZ NH1 NH2 REMARK 470 LYS B 282 CG CD CE NZ REMARK 470 LYS B 296 CE NZ REMARK 470 GLU B 335 CG CD OE1 OE2 REMARK 470 LYS B 366 CG CD CE NZ REMARK 470 ARG B 396 CZ NH1 NH2 REMARK 470 LYS B 445 CE NZ REMARK 470 LYS B 451 CD CE NZ REMARK 470 LYS B 489 CE NZ REMARK 470 LYS B 573 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 208 -115.52 57.40 REMARK 500 GLU A 237 -2.61 76.51 REMARK 500 GLU A 250 -70.07 -54.75 REMARK 500 ASP A 386 -51.71 71.92 REMARK 500 TYR A 420 -21.61 -143.16 REMARK 500 SER A 592 154.25 80.83 REMARK 500 LYS B 208 -123.87 55.91 REMARK 500 GLU B 237 -2.30 83.58 REMARK 500 GLU B 352 -159.80 -104.44 REMARK 500 PHE B 363 65.20 39.38 REMARK 500 ASP B 386 -49.47 74.19 REMARK 500 SER B 592 156.93 80.51 REMARK 500 REMARK 500 REMARK: NULL DBREF1 9M5M A 96 631 UNP A0A1G4H6Y1_PLAVI DBREF2 9M5M A A0A1G4H6Y1 96 631 DBREF1 9M5M B 96 631 UNP A0A1G4H6Y1_PLAVI DBREF2 9M5M B A0A1G4H6Y1 96 631 SEQRES 1 A 536 ALA GLU ARG GLU ASN LEU LYS ASN GLU ALA THR LYS VAL SEQRES 2 A 536 LEU GLU HIS VAL CYS GLU ASP ILE ASN LYS GLU SER TYR SEQRES 3 A 536 GLY PHE VAL LYS ILE SER LYS MET LYS GLU ASN GLU LYS SEQRES 4 A 536 GLU ILE ARG LEU PHE ASN LEU GLU GLU ILE TYR HIS SER SEQRES 5 A 536 LEU MET LYS VAL GLY GLY SER GLY ALA THR ASP GLY GLY SEQRES 6 A 536 LYS ARG GLU ASP ASP ALA ALA SER HIS SER VAL VAL ALA SEQRES 7 A 536 GLU SER ASN GLY ALA HIS LEU LEU GLN SER ASP ILE TRP SEQRES 8 A 536 VAL ARG GLY ARG ILE HIS ASP ILE ARG SER LYS GLY SER SEQRES 9 A 536 LEU ALA PHE ILE ILE LEU ARG HIS LYS LEU TYR SER MET SEQRES 10 A 536 GLN CYS ILE LEU ASP ILE LYS HIS ASN ASP ASN ASP LYS SEQRES 11 A 536 ASN MET MET LYS TRP VAL SER ASN LEU PRO LEU GLU SER SEQRES 12 A 536 ILE VAL ASP ILE LYS GLY LYS LEU SER LYS PRO GLU VAL SEQRES 13 A 536 PRO ILE ASP SER THR ASN ILE LYS TYR GLU ALA HIS ILE SEQRES 14 A 536 ARG LYS ILE PHE CYS ILE SER LYS THR ALA LYS GLU LEU SEQRES 15 A 536 PRO PHE LEU LEU LYS ASP ALA ASN MET LYS GLU THR ASN SEQRES 16 A 536 GLU GLU GLY SER ILE LYS VAL ASN GLN ASP ASN ARG LEU SEQRES 17 A 536 ASN ASN ARG CYS VAL ASP LEU ARG THR TYR ALA ASN TYR SEQRES 18 A 536 SER ILE PHE CYS LEU GLN SER GLN ILE CYS THR ILE PHE SEQRES 19 A 536 LYS ASN PHE LEU LEU GLU ASN ASN PHE ILE GLU ILE HIS SEQRES 20 A 536 THR PRO LYS LEU LEU GLY GLU SER SER GLU GLY GLY ALA SEQRES 21 A 536 ASN ALA PHE GLN ILE ASN TYR PHE ASN GLN LYS GLY PHE SEQRES 22 A 536 LEU ALA GLN SER PRO GLN LEU TYR LYS GLN MET CYS ILE SEQRES 23 A 536 ASN SER GLY PHE ASP ARG VAL PHE GLU VAL ALA PRO VAL SEQRES 24 A 536 PHE ARG ALA GLU ASN SER ASN THR TYR ARG HIS LEU CYS SEQRES 25 A 536 GLU TYR VAL SER LEU ASP VAL GLU MET THR TYR LYS TYR SEQRES 26 A 536 ASP TYR LEU GLU ASN VAL HIS PHE TYR ASP SER MET PHE SEQRES 27 A 536 LYS HIS ILE PHE THR GLU LEU SER LYS GLY GLY LYS ASN SEQRES 28 A 536 GLU MET LEU ILE LYS THR VAL LYS GLY GLN TYR PRO CYS SEQRES 29 A 536 GLU ASP PHE GLN TRP LEU GLU GLU THR PRO ILE PHE THR SEQRES 30 A 536 TYR GLU GLU ALA ILE LYS MET LEU ILE GLN HIS GLY LYS SEQRES 31 A 536 LEU HIS LEU LYS GLU GLU GLU ILE LEU ALA TYR ASP MET SEQRES 32 A 536 SER THR ASP MET GLU LYS GLU LEU GLY LYS ILE VAL LYS SEQRES 33 A 536 ALA SER HIS HIS THR ASP TYR TYR ILE ILE ILE ASN PHE SEQRES 34 A 536 PRO SER ALA LEU ARG PRO PHE TYR THR MET TYR LYS GLU SEQRES 35 A 536 ASP GLU PRO ALA ILE SER ASN SER TYR ASP PHE PHE MET SEQRES 36 A 536 ARG GLY GLU GLU ILE LEU SER GLY SER GLN ARG ILE SER SEQRES 37 A 536 ASP VAL ASN LEU LEU LEU GLU ASN ILE LYS ARG PHE ASN SEQRES 38 A 536 LEU ASP ALA ASN LYS LEU ASN PHE TYR ILE ASP SER PHE SEQRES 39 A 536 ALA TYR SER SER TYR PRO HIS SER GLY CYS GLY ILE GLY SEQRES 40 A 536 LEU GLU ARG VAL LEU MET LEU PHE LEU GLY LEU ASN ASN SEQRES 41 A 536 ILE ARG LYS THR SER LEU PHE PRO ARG ASP PRO LYS ARG SEQRES 42 A 536 LEU ILE PRO SEQRES 1 B 536 ALA GLU ARG GLU ASN LEU LYS ASN GLU ALA THR LYS VAL SEQRES 2 B 536 LEU GLU HIS VAL CYS GLU ASP ILE ASN LYS GLU SER TYR SEQRES 3 B 536 GLY PHE VAL LYS ILE SER LYS MET LYS GLU ASN GLU LYS SEQRES 4 B 536 GLU ILE ARG LEU PHE ASN LEU GLU GLU ILE TYR HIS SER SEQRES 5 B 536 LEU MET LYS VAL GLY GLY SER GLY ALA THR ASP GLY GLY SEQRES 6 B 536 LYS ARG GLU ASP ASP ALA ALA SER HIS SER VAL VAL ALA SEQRES 7 B 536 GLU SER ASN GLY ALA HIS LEU LEU GLN SER ASP ILE TRP SEQRES 8 B 536 VAL ARG GLY ARG ILE HIS ASP ILE ARG SER LYS GLY SER SEQRES 9 B 536 LEU ALA PHE ILE ILE LEU ARG HIS LYS LEU TYR SER MET SEQRES 10 B 536 GLN CYS ILE LEU ASP ILE LYS HIS ASN ASP ASN ASP LYS SEQRES 11 B 536 ASN MET MET LYS TRP VAL SER ASN LEU PRO LEU GLU SER SEQRES 12 B 536 ILE VAL ASP ILE LYS GLY LYS LEU SER LYS PRO GLU VAL SEQRES 13 B 536 PRO ILE ASP SER THR ASN ILE LYS TYR GLU ALA HIS ILE SEQRES 14 B 536 ARG LYS ILE PHE CYS ILE SER LYS THR ALA LYS GLU LEU SEQRES 15 B 536 PRO PHE LEU LEU LYS ASP ALA ASN MET LYS GLU THR ASN SEQRES 16 B 536 GLU GLU GLY SER ILE LYS VAL ASN GLN ASP ASN ARG LEU SEQRES 17 B 536 ASN ASN ARG CYS VAL ASP LEU ARG THR TYR ALA ASN TYR SEQRES 18 B 536 SER ILE PHE CYS LEU GLN SER GLN ILE CYS THR ILE PHE SEQRES 19 B 536 LYS ASN PHE LEU LEU GLU ASN ASN PHE ILE GLU ILE HIS SEQRES 20 B 536 THR PRO LYS LEU LEU GLY GLU SER SER GLU GLY GLY ALA SEQRES 21 B 536 ASN ALA PHE GLN ILE ASN TYR PHE ASN GLN LYS GLY PHE SEQRES 22 B 536 LEU ALA GLN SER PRO GLN LEU TYR LYS GLN MET CYS ILE SEQRES 23 B 536 ASN SER GLY PHE ASP ARG VAL PHE GLU VAL ALA PRO VAL SEQRES 24 B 536 PHE ARG ALA GLU ASN SER ASN THR TYR ARG HIS LEU CYS SEQRES 25 B 536 GLU TYR VAL SER LEU ASP VAL GLU MET THR TYR LYS TYR SEQRES 26 B 536 ASP TYR LEU GLU ASN VAL HIS PHE TYR ASP SER MET PHE SEQRES 27 B 536 LYS HIS ILE PHE THR GLU LEU SER LYS GLY GLY LYS ASN SEQRES 28 B 536 GLU MET LEU ILE LYS THR VAL LYS GLY GLN TYR PRO CYS SEQRES 29 B 536 GLU ASP PHE GLN TRP LEU GLU GLU THR PRO ILE PHE THR SEQRES 30 B 536 TYR GLU GLU ALA ILE LYS MET LEU ILE GLN HIS GLY LYS SEQRES 31 B 536 LEU HIS LEU LYS GLU GLU GLU ILE LEU ALA TYR ASP MET SEQRES 32 B 536 SER THR ASP MET GLU LYS GLU LEU GLY LYS ILE VAL LYS SEQRES 33 B 536 ALA SER HIS HIS THR ASP TYR TYR ILE ILE ILE ASN PHE SEQRES 34 B 536 PRO SER ALA LEU ARG PRO PHE TYR THR MET TYR LYS GLU SEQRES 35 B 536 ASP GLU PRO ALA ILE SER ASN SER TYR ASP PHE PHE MET SEQRES 36 B 536 ARG GLY GLU GLU ILE LEU SER GLY SER GLN ARG ILE SER SEQRES 37 B 536 ASP VAL ASN LEU LEU LEU GLU ASN ILE LYS ARG PHE ASN SEQRES 38 B 536 LEU ASP ALA ASN LYS LEU ASN PHE TYR ILE ASP SER PHE SEQRES 39 B 536 ALA TYR SER SER TYR PRO HIS SER GLY CYS GLY ILE GLY SEQRES 40 B 536 LEU GLU ARG VAL LEU MET LEU PHE LEU GLY LEU ASN ASN SEQRES 41 B 536 ILE ARG LYS THR SER LEU PHE PRO ARG ASP PRO LYS ARG SEQRES 42 B 536 LEU ILE PRO HET SO4 A 701 5 HET EDO A 702 4 HET SO4 A 703 5 HET SO4 A 704 5 HET SO4 B 701 5 HET EDO B 702 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 4(O4 S 2-) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 9 HOH *492(H2 O) HELIX 1 AA1 GLU A 99 GLU A 110 1 12 HELIX 2 AA2 LYS A 125 MET A 129 5 5 HELIX 3 AA3 ASN A 140 MET A 149 1 10 HELIX 4 AA4 LYS A 219 ASN A 221 5 3 HELIX 5 AA5 ASP A 224 ASN A 233 1 10 HELIX 6 AA6 LEU A 280 ASN A 285 1 6 HELIX 7 AA7 ASN A 298 ASN A 305 1 8 HELIX 8 AA8 ASN A 305 LEU A 310 1 6 HELIX 9 AA9 THR A 312 ASN A 336 1 25 HELIX 10 AB1 PRO A 373 SER A 383 1 11 HELIX 11 AB2 TYR A 422 SER A 441 1 20 HELIX 12 AB3 GLY A 443 TYR A 457 1 15 HELIX 13 AB4 TYR A 473 HIS A 483 1 11 HELIX 14 AB5 SER A 499 HIS A 515 1 17 HELIX 15 AB6 PRO A 525 ARG A 529 5 5 HELIX 16 AB7 ASP A 564 PHE A 575 1 12 HELIX 17 AB8 ASP A 578 LYS A 581 5 4 HELIX 18 AB9 LEU A 582 SER A 588 1 7 HELIX 19 AC1 LEU A 603 GLY A 612 1 10 HELIX 20 AC2 ASN A 615 THR A 619 5 5 HELIX 21 AC3 LEU B 101 GLU B 110 1 10 HELIX 22 AC4 LYS B 125 MET B 129 5 5 HELIX 23 AC5 ASN B 140 MET B 149 1 10 HELIX 24 AC6 LYS B 219 ASN B 221 5 3 HELIX 25 AC7 ASP B 224 ASN B 233 1 10 HELIX 26 AC8 LEU B 280 MET B 286 1 7 HELIX 27 AC9 ASN B 298 ASN B 305 1 8 HELIX 28 AD1 ASN B 305 LEU B 310 1 6 HELIX 29 AD2 THR B 312 ASN B 336 1 25 HELIX 30 AD3 GLY B 353 ALA B 357 5 5 HELIX 31 AD4 PRO B 373 SER B 383 1 11 HELIX 32 AD5 TYR B 422 SER B 441 1 20 HELIX 33 AD6 GLY B 444 TYR B 457 1 14 HELIX 34 AD7 TYR B 473 HIS B 483 1 11 HELIX 35 AD8 LYS B 489 ILE B 493 5 5 HELIX 36 AD9 SER B 499 HIS B 515 1 17 HELIX 37 AE1 PRO B 525 ARG B 529 5 5 HELIX 38 AE2 ASP B 564 PHE B 575 1 12 HELIX 39 AE3 ASP B 578 LYS B 581 5 4 HELIX 40 AE4 LEU B 582 SER B 588 1 7 HELIX 41 AE5 LEU B 603 GLY B 612 1 10 HELIX 42 AE6 ASN B 615 THR B 619 5 5 SHEET 1 AA1 6 TYR A 121 PHE A 123 0 SHEET 2 AA1 6 GLU A 261 SER A 271 1 O CYS A 269 N GLY A 122 SHEET 3 AA1 6 TYR A 210 ASP A 217 1 N ILE A 215 O ALA A 262 SHEET 4 AA1 6 LEU A 200 HIS A 207 -1 N ILE A 203 O CYS A 214 SHEET 5 AA1 6 ILE A 185 LYS A 197 -1 N ARG A 195 O PHE A 202 SHEET 6 AA1 6 LEU A 138 PHE A 139 1 N PHE A 139 O TRP A 186 SHEET 1 AA2 5 TYR A 121 PHE A 123 0 SHEET 2 AA2 5 GLU A 261 SER A 271 1 O CYS A 269 N GLY A 122 SHEET 3 AA2 5 ILE A 239 SER A 247 -1 N LYS A 243 O ARG A 265 SHEET 4 AA2 5 ILE A 185 LYS A 197 -1 N ILE A 185 O GLY A 244 SHEET 5 AA2 5 LEU A 138 PHE A 139 1 N PHE A 139 O TRP A 186 SHEET 1 AA3 8 ILE A 339 GLU A 340 0 SHEET 2 AA3 8 ARG A 387 PHE A 395 1 O ARG A 387 N ILE A 339 SHEET 3 AA3 8 GLU A 408 THR A 417 -1 O ASP A 413 N GLU A 390 SHEET 4 AA3 8 HIS A 596 GLY A 602 -1 O SER A 597 N MET A 416 SHEET 5 AA3 8 GLU A 553 GLN A 560 -1 N SER A 557 O GLY A 600 SHEET 6 AA3 8 SER A 545 MET A 550 -1 N PHE A 548 O ILE A 555 SHEET 7 AA3 8 TYR A 518 ILE A 522 -1 N ILE A 521 O ASP A 547 SHEET 8 AA3 8 ILE A 470 THR A 472 1 N PHE A 471 O ILE A 520 SHEET 1 AA4 3 LEU A 346 LEU A 347 0 SHEET 2 AA4 3 GLN A 365 LEU A 369 -1 O PHE A 368 N LEU A 347 SHEET 3 AA4 3 GLN A 359 TYR A 362 -1 N ILE A 360 O GLY A 367 SHEET 1 AA5 6 TYR B 121 PHE B 123 0 SHEET 2 AA5 6 GLU B 261 SER B 271 1 O CYS B 269 N GLY B 122 SHEET 3 AA5 6 TYR B 210 ASP B 217 1 N ILE B 215 O ALA B 262 SHEET 4 AA5 6 LEU B 200 HIS B 207 -1 N ILE B 203 O CYS B 214 SHEET 5 AA5 6 ILE B 185 LYS B 197 -1 N ARG B 195 O PHE B 202 SHEET 6 AA5 6 LEU B 138 PHE B 139 1 N PHE B 139 O TRP B 186 SHEET 1 AA6 5 TYR B 121 PHE B 123 0 SHEET 2 AA6 5 GLU B 261 SER B 271 1 O CYS B 269 N GLY B 122 SHEET 3 AA6 5 ILE B 239 SER B 247 -1 N SER B 247 O GLU B 261 SHEET 4 AA6 5 ILE B 185 LYS B 197 -1 N VAL B 187 O ILE B 242 SHEET 5 AA6 5 LEU B 138 PHE B 139 1 N PHE B 139 O TRP B 186 SHEET 1 AA7 8 ILE B 339 GLU B 340 0 SHEET 2 AA7 8 ARG B 387 PHE B 395 1 O ARG B 387 N ILE B 339 SHEET 3 AA7 8 GLU B 408 THR B 417 -1 O ASP B 413 N GLU B 390 SHEET 4 AA7 8 HIS B 596 GLY B 602 -1 O ILE B 601 N LEU B 412 SHEET 5 AA7 8 GLU B 553 GLN B 560 -1 N SER B 557 O GLY B 600 SHEET 6 AA7 8 SER B 545 MET B 550 -1 N MET B 550 O GLU B 553 SHEET 7 AA7 8 TYR B 518 ILE B 522 -1 N ILE B 521 O ASP B 547 SHEET 8 AA7 8 ILE B 470 THR B 472 1 N PHE B 471 O ILE B 522 SHEET 1 AA8 3 LEU B 346 LEU B 347 0 SHEET 2 AA8 3 GLN B 365 LEU B 369 -1 O PHE B 368 N LEU B 347 SHEET 3 AA8 3 GLN B 359 TYR B 362 -1 N ILE B 360 O GLY B 367 CISPEP 1 ILE A 630 PRO A 631 0 -12.41 CISPEP 2 ILE B 630 PRO B 631 0 -8.37 CRYST1 140.447 140.447 272.559 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007120 0.004111 0.000000 0.00000 SCALE2 0.000000 0.008222 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003669 0.00000 CONECT 8064 8065 8066 8067 8068 CONECT 8065 8064 CONECT 8066 8064 CONECT 8067 8064 CONECT 8068 8064 CONECT 8069 8070 8071 CONECT 8070 8069 CONECT 8071 8069 8072 CONECT 8072 8071 CONECT 8073 8074 8075 8076 8077 CONECT 8074 8073 CONECT 8075 8073 CONECT 8076 8073 CONECT 8077 8073 CONECT 8078 8079 8080 8081 8082 CONECT 8079 8078 CONECT 8080 8078 CONECT 8081 8078 CONECT 8082 8078 CONECT 8083 8084 8085 8086 8087 CONECT 8084 8083 CONECT 8085 8083 CONECT 8086 8083 CONECT 8087 8083 CONECT 8088 8089 8090 CONECT 8089 8088 CONECT 8090 8088 8091 CONECT 8091 8090 MASTER 442 0 6 42 44 0 0 6 8578 2 28 84 END