data_9M5P # _entry.id 9M5P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9M5P pdb_00009m5p 10.2210/pdb9m5p/pdb WWPDB D_1300057028 ? ? EMDB EMD-63646 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-07-09 ? 2 'Structure model' 1 1 2025-07-23 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9M5P _pdbx_database_status.recvd_initial_deposition_date 2025-03-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'I-shaped amyloid fiber (40) of Tottori (D7N) mutant' _pdbx_database_related.db_id EMD-63646 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email kazum@nips.ac.jp _pdbx_contact_author.name_first Kazuyoshi _pdbx_contact_author.name_last Murata _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-9446-3652 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Burton-Smith, R.N.' 1 ? 'Murata, K.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Chem Neurosci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1948-7193 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 16 _citation.language ? _citation.page_first 2682 _citation.page_last 2690 _citation.title 'Microgravity-Assisted Exploration of the Conformational Space of Amyloid beta Affected by Tottori-Type Familial Mutation D7N.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschemneuro.5c00217 _citation.pdbx_database_id_PubMed 40554613 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Yagi-Utsumi, M.' 1 0000-0001-8144-740X primary 'Yanaka, S.' 2 ? primary 'Burton-Smith, R.N.' 3 ? primary 'Song, C.' 4 ? primary 'Ganser, C.' 5 0000-0002-5558-3026 primary 'Yamazaki, C.' 6 ? primary 'Kasahara, H.' 7 ? primary 'Shimazu, T.' 8 ? primary 'Uchihashi, T.' 9 0000-0002-0263-5312 primary 'Murata, K.' 10 ? primary 'Kato, K.' 11 0000-0001-7187-9612 # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Amyloid-beta protein 40' _entity.formula_weight 4334.867 _entity.pdbx_number_of_molecules 6 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name Abeta40,Beta-APP40 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code DAEFRHNSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _entity_poly.pdbx_seq_one_letter_code_can DAEFRHNSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _entity_poly.pdbx_strand_id 1,2,3,4,5,6 _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 HIS n 1 7 ASN n 1 8 SER n 1 9 GLY n 1 10 TYR n 1 11 GLU n 1 12 VAL n 1 13 HIS n 1 14 HIS n 1 15 GLN n 1 16 LYS n 1 17 LEU n 1 18 VAL n 1 19 PHE n 1 20 PHE n 1 21 ALA n 1 22 GLU n 1 23 ASP n 1 24 VAL n 1 25 GLY n 1 26 SER n 1 27 ASN n 1 28 LYS n 1 29 GLY n 1 30 ALA n 1 31 ILE n 1 32 ILE n 1 33 GLY n 1 34 LEU n 1 35 MET n 1 36 VAL n 1 37 GLY n 1 38 GLY n 1 39 VAL n 1 40 VAL n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 40 _entity_src_nat.common_name human _entity_src_nat.pdbx_organism_scientific 'Homo sapiens' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 1 ? ? ? 1 . n A 1 2 ALA 2 2 ? ? ? 1 . n A 1 3 GLU 3 3 ? ? ? 1 . n A 1 4 PHE 4 4 ? ? ? 1 . n A 1 5 ARG 5 5 ? ? ? 1 . n A 1 6 HIS 6 6 ? ? ? 1 . n A 1 7 ASN 7 7 ? ? ? 1 . n A 1 8 SER 8 8 ? ? ? 1 . n A 1 9 GLY 9 9 ? ? ? 1 . n A 1 10 TYR 10 10 ? ? ? 1 . n A 1 11 GLU 11 11 ? ? ? 1 . n A 1 12 VAL 12 12 ? ? ? 1 . n A 1 13 HIS 13 13 ? ? ? 1 . n A 1 14 HIS 14 14 ? ? ? 1 . n A 1 15 GLN 15 15 ? ? ? 1 . n A 1 16 LYS 16 16 16 LYS LYS 1 . n A 1 17 LEU 17 17 17 LEU LEU 1 . n A 1 18 VAL 18 18 18 VAL VAL 1 . n A 1 19 PHE 19 19 19 PHE PHE 1 . n A 1 20 PHE 20 20 20 PHE PHE 1 . n A 1 21 ALA 21 21 21 ALA ALA 1 . n A 1 22 GLU 22 22 22 GLU GLU 1 . n A 1 23 ASP 23 23 23 ASP ASP 1 . n A 1 24 VAL 24 24 24 VAL VAL 1 . n A 1 25 GLY 25 25 25 GLY GLY 1 . n A 1 26 SER 26 26 26 SER SER 1 . n A 1 27 ASN 27 27 27 ASN ASN 1 . n A 1 28 LYS 28 28 28 LYS LYS 1 . n A 1 29 GLY 29 29 29 GLY GLY 1 . n A 1 30 ALA 30 30 30 ALA ALA 1 . n A 1 31 ILE 31 31 31 ILE ILE 1 . n A 1 32 ILE 32 32 32 ILE ILE 1 . n A 1 33 GLY 33 33 33 GLY GLY 1 . n A 1 34 LEU 34 34 34 LEU LEU 1 . n A 1 35 MET 35 35 35 MET MET 1 . n A 1 36 VAL 36 36 36 VAL VAL 1 . n A 1 37 GLY 37 37 37 GLY GLY 1 . n A 1 38 GLY 38 38 ? ? ? 1 . n A 1 39 VAL 39 39 ? ? ? 1 . n A 1 40 VAL 40 40 ? ? ? 1 . n B 1 1 ASP 1 1 ? ? ? 2 . n B 1 2 ALA 2 2 ? ? ? 2 . n B 1 3 GLU 3 3 ? ? ? 2 . n B 1 4 PHE 4 4 ? ? ? 2 . n B 1 5 ARG 5 5 ? ? ? 2 . n B 1 6 HIS 6 6 ? ? ? 2 . n B 1 7 ASN 7 7 ? ? ? 2 . n B 1 8 SER 8 8 ? ? ? 2 . n B 1 9 GLY 9 9 ? ? ? 2 . n B 1 10 TYR 10 10 ? ? ? 2 . n B 1 11 GLU 11 11 ? ? ? 2 . n B 1 12 VAL 12 12 ? ? ? 2 . n B 1 13 HIS 13 13 ? ? ? 2 . n B 1 14 HIS 14 14 ? ? ? 2 . n B 1 15 GLN 15 15 ? ? ? 2 . n B 1 16 LYS 16 16 16 LYS LYS 2 . n B 1 17 LEU 17 17 17 LEU LEU 2 . n B 1 18 VAL 18 18 18 VAL VAL 2 . n B 1 19 PHE 19 19 19 PHE PHE 2 . n B 1 20 PHE 20 20 20 PHE PHE 2 . n B 1 21 ALA 21 21 21 ALA ALA 2 . n B 1 22 GLU 22 22 22 GLU GLU 2 . n B 1 23 ASP 23 23 23 ASP ASP 2 . n B 1 24 VAL 24 24 24 VAL VAL 2 . n B 1 25 GLY 25 25 25 GLY GLY 2 . n B 1 26 SER 26 26 26 SER SER 2 . n B 1 27 ASN 27 27 27 ASN ASN 2 . n B 1 28 LYS 28 28 28 LYS LYS 2 . n B 1 29 GLY 29 29 29 GLY GLY 2 . n B 1 30 ALA 30 30 30 ALA ALA 2 . n B 1 31 ILE 31 31 31 ILE ILE 2 . n B 1 32 ILE 32 32 32 ILE ILE 2 . n B 1 33 GLY 33 33 33 GLY GLY 2 . n B 1 34 LEU 34 34 34 LEU LEU 2 . n B 1 35 MET 35 35 35 MET MET 2 . n B 1 36 VAL 36 36 36 VAL VAL 2 . n B 1 37 GLY 37 37 37 GLY GLY 2 . n B 1 38 GLY 38 38 ? ? ? 2 . n B 1 39 VAL 39 39 ? ? ? 2 . n B 1 40 VAL 40 40 ? ? ? 2 . n C 1 1 ASP 1 1 ? ? ? 3 . n C 1 2 ALA 2 2 ? ? ? 3 . n C 1 3 GLU 3 3 ? ? ? 3 . n C 1 4 PHE 4 4 ? ? ? 3 . n C 1 5 ARG 5 5 ? ? ? 3 . n C 1 6 HIS 6 6 ? ? ? 3 . n C 1 7 ASN 7 7 ? ? ? 3 . n C 1 8 SER 8 8 ? ? ? 3 . n C 1 9 GLY 9 9 ? ? ? 3 . n C 1 10 TYR 10 10 ? ? ? 3 . n C 1 11 GLU 11 11 ? ? ? 3 . n C 1 12 VAL 12 12 ? ? ? 3 . n C 1 13 HIS 13 13 ? ? ? 3 . n C 1 14 HIS 14 14 ? ? ? 3 . n C 1 15 GLN 15 15 ? ? ? 3 . n C 1 16 LYS 16 16 16 LYS LYS 3 . n C 1 17 LEU 17 17 17 LEU LEU 3 . n C 1 18 VAL 18 18 18 VAL VAL 3 . n C 1 19 PHE 19 19 19 PHE PHE 3 . n C 1 20 PHE 20 20 20 PHE PHE 3 . n C 1 21 ALA 21 21 21 ALA ALA 3 . n C 1 22 GLU 22 22 22 GLU GLU 3 . n C 1 23 ASP 23 23 23 ASP ASP 3 . n C 1 24 VAL 24 24 24 VAL VAL 3 . n C 1 25 GLY 25 25 25 GLY GLY 3 . n C 1 26 SER 26 26 26 SER SER 3 . n C 1 27 ASN 27 27 27 ASN ASN 3 . n C 1 28 LYS 28 28 28 LYS LYS 3 . n C 1 29 GLY 29 29 29 GLY GLY 3 . n C 1 30 ALA 30 30 30 ALA ALA 3 . n C 1 31 ILE 31 31 31 ILE ILE 3 . n C 1 32 ILE 32 32 32 ILE ILE 3 . n C 1 33 GLY 33 33 33 GLY GLY 3 . n C 1 34 LEU 34 34 34 LEU LEU 3 . n C 1 35 MET 35 35 35 MET MET 3 . n C 1 36 VAL 36 36 36 VAL VAL 3 . n C 1 37 GLY 37 37 37 GLY GLY 3 . n C 1 38 GLY 38 38 ? ? ? 3 . n C 1 39 VAL 39 39 ? ? ? 3 . n C 1 40 VAL 40 40 ? ? ? 3 . n D 1 1 ASP 1 1 ? ? ? 4 . n D 1 2 ALA 2 2 ? ? ? 4 . n D 1 3 GLU 3 3 ? ? ? 4 . n D 1 4 PHE 4 4 ? ? ? 4 . n D 1 5 ARG 5 5 ? ? ? 4 . n D 1 6 HIS 6 6 ? ? ? 4 . n D 1 7 ASN 7 7 ? ? ? 4 . n D 1 8 SER 8 8 ? ? ? 4 . n D 1 9 GLY 9 9 ? ? ? 4 . n D 1 10 TYR 10 10 ? ? ? 4 . n D 1 11 GLU 11 11 ? ? ? 4 . n D 1 12 VAL 12 12 ? ? ? 4 . n D 1 13 HIS 13 13 ? ? ? 4 . n D 1 14 HIS 14 14 ? ? ? 4 . n D 1 15 GLN 15 15 ? ? ? 4 . n D 1 16 LYS 16 16 16 LYS LYS 4 . n D 1 17 LEU 17 17 17 LEU LEU 4 . n D 1 18 VAL 18 18 18 VAL VAL 4 . n D 1 19 PHE 19 19 19 PHE PHE 4 . n D 1 20 PHE 20 20 20 PHE PHE 4 . n D 1 21 ALA 21 21 21 ALA ALA 4 . n D 1 22 GLU 22 22 22 GLU GLU 4 . n D 1 23 ASP 23 23 23 ASP ASP 4 . n D 1 24 VAL 24 24 24 VAL VAL 4 . n D 1 25 GLY 25 25 25 GLY GLY 4 . n D 1 26 SER 26 26 26 SER SER 4 . n D 1 27 ASN 27 27 27 ASN ASN 4 . n D 1 28 LYS 28 28 28 LYS LYS 4 . n D 1 29 GLY 29 29 29 GLY GLY 4 . n D 1 30 ALA 30 30 30 ALA ALA 4 . n D 1 31 ILE 31 31 31 ILE ILE 4 . n D 1 32 ILE 32 32 32 ILE ILE 4 . n D 1 33 GLY 33 33 33 GLY GLY 4 . n D 1 34 LEU 34 34 34 LEU LEU 4 . n D 1 35 MET 35 35 35 MET MET 4 . n D 1 36 VAL 36 36 36 VAL VAL 4 . n D 1 37 GLY 37 37 37 GLY GLY 4 . n D 1 38 GLY 38 38 ? ? ? 4 . n D 1 39 VAL 39 39 ? ? ? 4 . n D 1 40 VAL 40 40 ? ? ? 4 . n E 1 1 ASP 1 1 ? ? ? 5 . n E 1 2 ALA 2 2 ? ? ? 5 . n E 1 3 GLU 3 3 ? ? ? 5 . n E 1 4 PHE 4 4 ? ? ? 5 . n E 1 5 ARG 5 5 ? ? ? 5 . n E 1 6 HIS 6 6 ? ? ? 5 . n E 1 7 ASN 7 7 ? ? ? 5 . n E 1 8 SER 8 8 ? ? ? 5 . n E 1 9 GLY 9 9 ? ? ? 5 . n E 1 10 TYR 10 10 ? ? ? 5 . n E 1 11 GLU 11 11 ? ? ? 5 . n E 1 12 VAL 12 12 ? ? ? 5 . n E 1 13 HIS 13 13 ? ? ? 5 . n E 1 14 HIS 14 14 ? ? ? 5 . n E 1 15 GLN 15 15 ? ? ? 5 . n E 1 16 LYS 16 16 16 LYS LYS 5 . n E 1 17 LEU 17 17 17 LEU LEU 5 . n E 1 18 VAL 18 18 18 VAL VAL 5 . n E 1 19 PHE 19 19 19 PHE PHE 5 . n E 1 20 PHE 20 20 20 PHE PHE 5 . n E 1 21 ALA 21 21 21 ALA ALA 5 . n E 1 22 GLU 22 22 22 GLU GLU 5 . n E 1 23 ASP 23 23 23 ASP ASP 5 . n E 1 24 VAL 24 24 24 VAL VAL 5 . n E 1 25 GLY 25 25 25 GLY GLY 5 . n E 1 26 SER 26 26 26 SER SER 5 . n E 1 27 ASN 27 27 27 ASN ASN 5 . n E 1 28 LYS 28 28 28 LYS LYS 5 . n E 1 29 GLY 29 29 29 GLY GLY 5 . n E 1 30 ALA 30 30 30 ALA ALA 5 . n E 1 31 ILE 31 31 31 ILE ILE 5 . n E 1 32 ILE 32 32 32 ILE ILE 5 . n E 1 33 GLY 33 33 33 GLY GLY 5 . n E 1 34 LEU 34 34 34 LEU LEU 5 . n E 1 35 MET 35 35 35 MET MET 5 . n E 1 36 VAL 36 36 36 VAL VAL 5 . n E 1 37 GLY 37 37 37 GLY GLY 5 . n E 1 38 GLY 38 38 ? ? ? 5 . n E 1 39 VAL 39 39 ? ? ? 5 . n E 1 40 VAL 40 40 ? ? ? 5 . n F 1 1 ASP 1 1 ? ? ? 6 . n F 1 2 ALA 2 2 ? ? ? 6 . n F 1 3 GLU 3 3 ? ? ? 6 . n F 1 4 PHE 4 4 ? ? ? 6 . n F 1 5 ARG 5 5 ? ? ? 6 . n F 1 6 HIS 6 6 ? ? ? 6 . n F 1 7 ASN 7 7 ? ? ? 6 . n F 1 8 SER 8 8 ? ? ? 6 . n F 1 9 GLY 9 9 ? ? ? 6 . n F 1 10 TYR 10 10 ? ? ? 6 . n F 1 11 GLU 11 11 ? ? ? 6 . n F 1 12 VAL 12 12 ? ? ? 6 . n F 1 13 HIS 13 13 ? ? ? 6 . n F 1 14 HIS 14 14 ? ? ? 6 . n F 1 15 GLN 15 15 ? ? ? 6 . n F 1 16 LYS 16 16 16 LYS LYS 6 . n F 1 17 LEU 17 17 17 LEU LEU 6 . n F 1 18 VAL 18 18 18 VAL VAL 6 . n F 1 19 PHE 19 19 19 PHE PHE 6 . n F 1 20 PHE 20 20 20 PHE PHE 6 . n F 1 21 ALA 21 21 21 ALA ALA 6 . n F 1 22 GLU 22 22 22 GLU GLU 6 . n F 1 23 ASP 23 23 23 ASP ASP 6 . n F 1 24 VAL 24 24 24 VAL VAL 6 . n F 1 25 GLY 25 25 25 GLY GLY 6 . n F 1 26 SER 26 26 26 SER SER 6 . n F 1 27 ASN 27 27 27 ASN ASN 6 . n F 1 28 LYS 28 28 28 LYS LYS 6 . n F 1 29 GLY 29 29 29 GLY GLY 6 . n F 1 30 ALA 30 30 30 ALA ALA 6 . n F 1 31 ILE 31 31 31 ILE ILE 6 . n F 1 32 ILE 32 32 32 ILE ILE 6 . n F 1 33 GLY 33 33 33 GLY GLY 6 . n F 1 34 LEU 34 34 34 LEU LEU 6 . n F 1 35 MET 35 35 35 MET MET 6 . n F 1 36 VAL 36 36 36 VAL VAL 6 . n F 1 37 GLY 37 37 37 GLY GLY 6 . n F 1 38 GLY 38 38 ? ? ? 6 . n F 1 39 VAL 39 39 ? ? ? 6 . n F 1 40 VAL 40 40 ? ? ? 6 . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 9M5P _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9M5P _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 9M5P _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_Zscore _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.0031 ? 954 ? s_bond_nonh_d 0.0119 ? ? 'ELECTRON MICROSCOPY' ? 0.5604 ? 1266 ? s_angle_nonh_deg 1.77 ? ? 'ELECTRON MICROSCOPY' ? 3.0833 ? 126 ? s_dihedral_angle_1_deg 5 ? ? 'ELECTRON MICROSCOPY' ? 1.5267 ? 6 ? s_dihedral_angle_2_deg 5 ? ? 'ELECTRON MICROSCOPY' ? 8.1585 ? 300 ? s_dihedral_angle_3_deg 10 ? ? 'ELECTRON MICROSCOPY' ? 10.2869 ? 54 ? s_dihedral_angle_6_deg 10 ? ? 'ELECTRON MICROSCOPY' ? 0.024 ? 150 ? s_chiral_restr 0.1293 ? ? 'ELECTRON MICROSCOPY' ? 0.002 ? 1248 ? s_planes 0.02 ? ? 'ELECTRON MICROSCOPY' ? 0.2046 ? 1111 ? s_nbd 0.2 ? ? 'ELECTRON MICROSCOPY' ? 0.2024 ? 1792 ? s_nbtor 0.2 ? ? 'ELECTRON MICROSCOPY' ? 0.13 ? 2 ? s_hbond_nbd 0.2 ? ? # _struct.entry_id 9M5P _struct.title 'I-type amyloid fibril (40) of Tottori (D7N) mutant' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9M5P _struct_keywords.text 'Amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A4_HUMAN _struct_ref.pdbx_db_accession P05067 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code DAEFRHDSGYEVHHQKLVFFAEDVGSNKGAIIGLMVGGVV _struct_ref.pdbx_align_begin 672 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9M5P 1 1 ? 40 ? P05067 672 ? 711 ? 1 40 2 1 9M5P 2 1 ? 40 ? P05067 672 ? 711 ? 1 40 3 1 9M5P 3 1 ? 40 ? P05067 672 ? 711 ? 1 40 4 1 9M5P 4 1 ? 40 ? P05067 672 ? 711 ? 1 40 5 1 9M5P 5 1 ? 40 ? P05067 672 ? 711 ? 1 40 6 1 9M5P 6 1 ? 40 ? P05067 672 ? 711 ? 1 40 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 9M5P ASN 1 7 ? UNP P05067 ASP 678 variant 7 1 2 9M5P ASN 2 7 ? UNP P05067 ASP 678 variant 7 2 3 9M5P ASN 3 7 ? UNP P05067 ASP 678 variant 7 3 4 9M5P ASN 4 7 ? UNP P05067 ASP 678 variant 7 4 5 9M5P ASN 5 7 ? UNP P05067 ASP 678 variant 7 5 6 9M5P ASN 6 7 ? UNP P05067 ASP 678 variant 7 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LEU A 17 ? VAL A 24 ? LEU 1 17 VAL 1 24 AA1 2 LEU B 17 ? VAL B 24 ? LEU 2 17 VAL 2 24 AA1 3 LEU C 17 ? VAL C 24 ? LEU 3 17 VAL 3 24 AA2 1 ALA A 30 ? ILE A 32 ? ALA 1 30 ILE 1 32 AA2 2 ALA B 30 ? ILE B 32 ? ALA 2 30 ILE 2 32 AA2 3 ALA C 30 ? ILE C 32 ? ALA 3 30 ILE 3 32 AA3 1 MET A 35 ? VAL A 36 ? MET 1 35 VAL 1 36 AA3 2 MET B 35 ? VAL B 36 ? MET 2 35 VAL 2 36 AA3 3 MET C 35 ? VAL C 36 ? MET 3 35 VAL 3 36 AA4 1 LEU D 17 ? VAL D 24 ? LEU 4 17 VAL 4 24 AA4 2 LEU E 17 ? VAL E 24 ? LEU 5 17 VAL 5 24 AA4 3 LEU F 17 ? VAL F 24 ? LEU 6 17 VAL 6 24 AA5 1 ALA D 30 ? VAL D 36 ? ALA 4 30 VAL 4 36 AA5 2 ALA E 30 ? VAL E 36 ? ALA 5 30 VAL 5 36 AA5 3 ALA F 30 ? VAL F 36 ? ALA 6 30 VAL 6 36 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ASP A 23 ? N ASP 1 23 O VAL B 24 ? O VAL 2 24 AA1 2 3 N ASP B 23 ? N ASP 2 23 O VAL C 24 ? O VAL 3 24 AA2 1 2 N ILE A 32 ? N ILE 1 32 O ILE B 31 ? O ILE 2 31 AA2 2 3 N ILE B 32 ? N ILE 2 32 O ILE C 31 ? O ILE 3 31 AA3 1 2 N MET A 35 ? N MET 1 35 O VAL B 36 ? O VAL 2 36 AA3 2 3 N MET B 35 ? N MET 2 35 O VAL C 36 ? O VAL 3 36 AA4 1 2 N ASP D 23 ? N ASP 4 23 O VAL E 24 ? O VAL 5 24 AA4 2 3 N ASP E 23 ? N ASP 5 23 O VAL F 24 ? O VAL 6 24 AA5 1 2 N ALA D 30 ? N ALA 4 30 O ILE E 31 ? O ILE 5 31 AA5 2 3 N ALA E 30 ? N ALA 5 30 O ILE F 31 ? O ILE 6 31 # _pdbx_entry_details.entry_id 9M5P _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP 1 23 ? ? 58.21 71.60 2 1 ASP 2 23 ? ? 58.36 71.70 3 1 ASP 3 23 ? ? 58.47 73.20 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 9M5P _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 9M5P _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.3 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 36690 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'I-shaped amyloid fiber (40) of Tottori (D7N) mutant' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 9M5P _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1200 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 9M5P _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 9M5P _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state 'HELICAL ARRAY' _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 1 ASP 1 ? A ASP 1 2 1 Y 1 1 ALA 2 ? A ALA 2 3 1 Y 1 1 GLU 3 ? A GLU 3 4 1 Y 1 1 PHE 4 ? A PHE 4 5 1 Y 1 1 ARG 5 ? A ARG 5 6 1 Y 1 1 HIS 6 ? A HIS 6 7 1 Y 1 1 ASN 7 ? A ASN 7 8 1 Y 1 1 SER 8 ? A SER 8 9 1 Y 1 1 GLY 9 ? A GLY 9 10 1 Y 1 1 TYR 10 ? A TYR 10 11 1 Y 1 1 GLU 11 ? A GLU 11 12 1 Y 1 1 VAL 12 ? A VAL 12 13 1 Y 1 1 HIS 13 ? A HIS 13 14 1 Y 1 1 HIS 14 ? A HIS 14 15 1 Y 1 1 GLN 15 ? A GLN 15 16 1 Y 1 1 GLY 38 ? A GLY 38 17 1 Y 1 1 VAL 39 ? A VAL 39 18 1 Y 1 1 VAL 40 ? A VAL 40 19 1 Y 1 2 ASP 1 ? B ASP 1 20 1 Y 1 2 ALA 2 ? B ALA 2 21 1 Y 1 2 GLU 3 ? B GLU 3 22 1 Y 1 2 PHE 4 ? B PHE 4 23 1 Y 1 2 ARG 5 ? B ARG 5 24 1 Y 1 2 HIS 6 ? B HIS 6 25 1 Y 1 2 ASN 7 ? B ASN 7 26 1 Y 1 2 SER 8 ? B SER 8 27 1 Y 1 2 GLY 9 ? B GLY 9 28 1 Y 1 2 TYR 10 ? B TYR 10 29 1 Y 1 2 GLU 11 ? B GLU 11 30 1 Y 1 2 VAL 12 ? B VAL 12 31 1 Y 1 2 HIS 13 ? B HIS 13 32 1 Y 1 2 HIS 14 ? B HIS 14 33 1 Y 1 2 GLN 15 ? B GLN 15 34 1 Y 1 2 GLY 38 ? B GLY 38 35 1 Y 1 2 VAL 39 ? B VAL 39 36 1 Y 1 2 VAL 40 ? B VAL 40 37 1 Y 1 3 ASP 1 ? C ASP 1 38 1 Y 1 3 ALA 2 ? C ALA 2 39 1 Y 1 3 GLU 3 ? C GLU 3 40 1 Y 1 3 PHE 4 ? C PHE 4 41 1 Y 1 3 ARG 5 ? C ARG 5 42 1 Y 1 3 HIS 6 ? C HIS 6 43 1 Y 1 3 ASN 7 ? C ASN 7 44 1 Y 1 3 SER 8 ? C SER 8 45 1 Y 1 3 GLY 9 ? C GLY 9 46 1 Y 1 3 TYR 10 ? C TYR 10 47 1 Y 1 3 GLU 11 ? C GLU 11 48 1 Y 1 3 VAL 12 ? C VAL 12 49 1 Y 1 3 HIS 13 ? C HIS 13 50 1 Y 1 3 HIS 14 ? C HIS 14 51 1 Y 1 3 GLN 15 ? C GLN 15 52 1 Y 1 3 GLY 38 ? C GLY 38 53 1 Y 1 3 VAL 39 ? C VAL 39 54 1 Y 1 3 VAL 40 ? C VAL 40 55 1 Y 1 4 ASP 1 ? D ASP 1 56 1 Y 1 4 ALA 2 ? D ALA 2 57 1 Y 1 4 GLU 3 ? D GLU 3 58 1 Y 1 4 PHE 4 ? D PHE 4 59 1 Y 1 4 ARG 5 ? D ARG 5 60 1 Y 1 4 HIS 6 ? D HIS 6 61 1 Y 1 4 ASN 7 ? D ASN 7 62 1 Y 1 4 SER 8 ? D SER 8 63 1 Y 1 4 GLY 9 ? D GLY 9 64 1 Y 1 4 TYR 10 ? D TYR 10 65 1 Y 1 4 GLU 11 ? D GLU 11 66 1 Y 1 4 VAL 12 ? D VAL 12 67 1 Y 1 4 HIS 13 ? D HIS 13 68 1 Y 1 4 HIS 14 ? D HIS 14 69 1 Y 1 4 GLN 15 ? D GLN 15 70 1 Y 1 4 GLY 38 ? D GLY 38 71 1 Y 1 4 VAL 39 ? D VAL 39 72 1 Y 1 4 VAL 40 ? D VAL 40 73 1 Y 1 5 ASP 1 ? E ASP 1 74 1 Y 1 5 ALA 2 ? E ALA 2 75 1 Y 1 5 GLU 3 ? E GLU 3 76 1 Y 1 5 PHE 4 ? E PHE 4 77 1 Y 1 5 ARG 5 ? E ARG 5 78 1 Y 1 5 HIS 6 ? E HIS 6 79 1 Y 1 5 ASN 7 ? E ASN 7 80 1 Y 1 5 SER 8 ? E SER 8 81 1 Y 1 5 GLY 9 ? E GLY 9 82 1 Y 1 5 TYR 10 ? E TYR 10 83 1 Y 1 5 GLU 11 ? E GLU 11 84 1 Y 1 5 VAL 12 ? E VAL 12 85 1 Y 1 5 HIS 13 ? E HIS 13 86 1 Y 1 5 HIS 14 ? E HIS 14 87 1 Y 1 5 GLN 15 ? E GLN 15 88 1 Y 1 5 GLY 38 ? E GLY 38 89 1 Y 1 5 VAL 39 ? E VAL 39 90 1 Y 1 5 VAL 40 ? E VAL 40 91 1 Y 1 6 ASP 1 ? F ASP 1 92 1 Y 1 6 ALA 2 ? F ALA 2 93 1 Y 1 6 GLU 3 ? F GLU 3 94 1 Y 1 6 PHE 4 ? F PHE 4 95 1 Y 1 6 ARG 5 ? F ARG 5 96 1 Y 1 6 HIS 6 ? F HIS 6 97 1 Y 1 6 ASN 7 ? F ASN 7 98 1 Y 1 6 SER 8 ? F SER 8 99 1 Y 1 6 GLY 9 ? F GLY 9 100 1 Y 1 6 TYR 10 ? F TYR 10 101 1 Y 1 6 GLU 11 ? F GLU 11 102 1 Y 1 6 VAL 12 ? F VAL 12 103 1 Y 1 6 HIS 13 ? F HIS 13 104 1 Y 1 6 HIS 14 ? F HIS 14 105 1 Y 1 6 GLN 15 ? F GLN 15 106 1 Y 1 6 GLY 38 ? F GLY 38 107 1 Y 1 6 VAL 39 ? F VAL 39 108 1 Y 1 6 VAL 40 ? F VAL 40 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 SER N N N N 256 SER CA C N S 257 SER C C N N 258 SER O O N N 259 SER CB C N N 260 SER OG O N N 261 SER OXT O N N 262 SER H H N N 263 SER H2 H N N 264 SER HA H N N 265 SER HB2 H N N 266 SER HB3 H N N 267 SER HG H N N 268 SER HXT H N N 269 TYR N N N N 270 TYR CA C N S 271 TYR C C N N 272 TYR O O N N 273 TYR CB C N N 274 TYR CG C Y N 275 TYR CD1 C Y N 276 TYR CD2 C Y N 277 TYR CE1 C Y N 278 TYR CE2 C Y N 279 TYR CZ C Y N 280 TYR OH O N N 281 TYR OXT O N N 282 TYR H H N N 283 TYR H2 H N N 284 TYR HA H N N 285 TYR HB2 H N N 286 TYR HB3 H N N 287 TYR HD1 H N N 288 TYR HD2 H N N 289 TYR HE1 H N N 290 TYR HE2 H N N 291 TYR HH H N N 292 TYR HXT H N N 293 VAL N N N N 294 VAL CA C N S 295 VAL C C N N 296 VAL O O N N 297 VAL CB C N N 298 VAL CG1 C N N 299 VAL CG2 C N N 300 VAL OXT O N N 301 VAL H H N N 302 VAL H2 H N N 303 VAL HA H N N 304 VAL HB H N N 305 VAL HG11 H N N 306 VAL HG12 H N N 307 VAL HG13 H N N 308 VAL HG21 H N N 309 VAL HG22 H N N 310 VAL HG23 H N N 311 VAL HXT H N N 312 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 SER N CA sing N N 245 SER N H sing N N 246 SER N H2 sing N N 247 SER CA C sing N N 248 SER CA CB sing N N 249 SER CA HA sing N N 250 SER C O doub N N 251 SER C OXT sing N N 252 SER CB OG sing N N 253 SER CB HB2 sing N N 254 SER CB HB3 sing N N 255 SER OG HG sing N N 256 SER OXT HXT sing N N 257 TYR N CA sing N N 258 TYR N H sing N N 259 TYR N H2 sing N N 260 TYR CA C sing N N 261 TYR CA CB sing N N 262 TYR CA HA sing N N 263 TYR C O doub N N 264 TYR C OXT sing N N 265 TYR CB CG sing N N 266 TYR CB HB2 sing N N 267 TYR CB HB3 sing N N 268 TYR CG CD1 doub Y N 269 TYR CG CD2 sing Y N 270 TYR CD1 CE1 sing Y N 271 TYR CD1 HD1 sing N N 272 TYR CD2 CE2 doub Y N 273 TYR CD2 HD2 sing N N 274 TYR CE1 CZ doub Y N 275 TYR CE1 HE1 sing N N 276 TYR CE2 CZ sing Y N 277 TYR CE2 HE2 sing N N 278 TYR CZ OH sing N N 279 TYR OH HH sing N N 280 TYR OXT HXT sing N N 281 VAL N CA sing N N 282 VAL N H sing N N 283 VAL N H2 sing N N 284 VAL CA C sing N N 285 VAL CA CB sing N N 286 VAL CA HA sing N N 287 VAL C O doub N N 288 VAL C OXT sing N N 289 VAL CB CG1 sing N N 290 VAL CB CG2 sing N N 291 VAL CB HB sing N N 292 VAL CG1 HG11 sing N N 293 VAL CG1 HG12 sing N N 294 VAL CG1 HG13 sing N N 295 VAL CG2 HG21 sing N N 296 VAL CG2 HG22 sing N N 297 VAL CG2 HG23 sing N N 298 VAL OXT HXT sing N N 299 # _em_admin.current_status REL _em_admin.deposition_date 2025-03-06 _em_admin.deposition_site PDBJ _em_admin.entry_id 9M5P _em_admin.last_update 2025-07-23 _em_admin.map_release_date 2025-07-09 _em_admin.title 'I-shaped amyloid fiber (40) of Tottori (D7N) mutant' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit 179.369 _em_helical_entity.axial_rise_per_subunit 2.41486 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Ministry of Education, Culture, Sports, Science and Technology (Japan)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number JP24ama121005 _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 9M5P _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_ #