HEADER ELECTRON TRANSPORT 06-MAR-25 9M62 TITLE X-RAY CRYSTAL STRUCTURE OF PSEUDOAZURIN MET16ARG VARIANT, OXIDIZED TITLE 2 FORM AT PH 7.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PSEUDOAZURIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BLUE COPPER PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER CYCLOCLASTES; SOURCE 3 ORGANISM_TAXID: 223; SOURCE 4 GENE: BCP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CU BINDING PROTEIN, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR I.NEMOTO,T.YAMAGUCHI,T.KOHZUMA REVDAT 1 11-MAR-26 9M62 0 JRNL AUTH T.YAMAGUCHI JRNL TITL X-RAY CRYSTAL STRUCTURE OF PSEUDOAZURIN MET16ARG VARIANT, JRNL TITL 2 OXIDIZED FORM AT PH 7.0 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 61615 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.156 REMARK 3 FREE R VALUE TEST SET COUNT : 3177 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4504 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.18 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 235 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1832 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 474 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.20200 REMARK 3 B22 (A**2) : -1.04400 REMARK 3 B33 (A**2) : -0.10500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.053 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.478 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1896 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1839 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2569 ; 1.947 ; 1.833 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4258 ; 0.636 ; 1.767 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 252 ; 7.166 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 5 ;12.947 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 317 ;12.702 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2210 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 382 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 356 ; 0.221 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 37 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 911 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 334 ; 0.270 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.211 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.168 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1002 ; 0.642 ; 0.278 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1002 ; 0.638 ; 0.278 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1253 ; 1.046 ; 0.499 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1254 ; 1.047 ; 0.500 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 894 ; 1.089 ; 0.326 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 891 ; 0.967 ; 0.322 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1315 ; 1.578 ; 0.575 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1310 ; 1.457 ; 0.568 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3735 ; 3.041 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : Ap 1 Ap 124 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7603 1.0568 2.4395 REMARK 3 T TENSOR REMARK 3 T11: 0.0015 T22: 0.0747 REMARK 3 T33: 0.0728 T12: 0.0021 REMARK 3 T13: -0.0017 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 1.4319 L22: 0.8960 REMARK 3 L33: 0.5192 L12: -0.0226 REMARK 3 L13: -0.0301 L23: -0.0398 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: 0.0429 S13: 0.0565 REMARK 3 S21: -0.0284 S22: 0.0081 S23: -0.0242 REMARK 3 S31: -0.0090 S32: -0.0040 S33: 0.0106 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): 23.8643 -1.4806 -21.3996 REMARK 3 T TENSOR REMARK 3 T11: 0.0620 T22: 0.1048 REMARK 3 T33: 0.0790 T12: -0.0063 REMARK 3 T13: 0.0164 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 0.5189 L22: 1.7927 REMARK 3 L33: 1.8917 L12: 0.0422 REMARK 3 L13: 0.0691 L23: -0.0459 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: 0.0060 S13: 0.0161 REMARK 3 S21: 0.0270 S22: -0.0695 S23: 0.1328 REMARK 3 S31: 0.0408 S32: -0.1592 S33: 0.0713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 9M62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAR-25. REMARK 100 THE DEPOSITION ID IS D_1300057230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS4 X 1M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61638 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 39.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 6.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 39.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.03000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 26.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG1500, 100 MM POTASSIUM PHOSPHATE, REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 30.05500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 338 O HOH A 389 1.33 REMARK 500 O HOH A 498 O HOH A 540 1.71 REMARK 500 O HOH A 540 O HOH A 548 1.71 REMARK 500 OD1 ASP B 51 O HOH B 301 1.73 REMARK 500 O HOH A 335 O HOH A 436 1.74 REMARK 500 O HOH A 416 O HOH A 455 1.87 REMARK 500 O HOH A 357 O HOH A 405 1.88 REMARK 500 O HOH B 482 O HOH B 495 2.05 REMARK 500 O HOH A 314 O HOH B 442 2.06 REMARK 500 OD1 ASP B 37 O HOH B 302 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 403 O HOH B 301 1556 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 4 CD GLU B 4 OE2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 16 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 GLU A 100 CB - CA - C ANGL. DEV. = -12.5 DEGREES REMARK 500 GLU B 4 CG - CD - OE1 ANGL. DEV. = 13.7 DEGREES REMARK 500 GLU B 4 CG - CD - OE2 ANGL. DEV. = -16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 16 76.91 54.81 REMARK 500 THR A 69 -62.32 -109.26 REMARK 500 ARG B 16 74.97 68.86 REMARK 500 ARG B 16 78.53 65.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 16 0.08 SIDE CHAIN REMARK 500 ARG B 16 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 543 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 544 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A 545 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 546 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 547 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 548 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A 549 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 550 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH A 551 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 552 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 553 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH A 554 DISTANCE = 8.36 ANGSTROMS REMARK 525 HOH B 517 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH B 518 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH B 519 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 520 DISTANCE = 6.59 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 40 ND1 REMARK 620 2 CYS A 78 SG 132.5 REMARK 620 3 HIS A 81 ND1 100.0 109.0 REMARK 620 4 MET A 86 SD 89.0 112.8 111.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 40 ND1 REMARK 620 2 CYS B 78 SG 132.0 REMARK 620 3 HIS B 81 ND1 98.1 110.5 REMARK 620 4 MET B 86 SD 90.2 113.4 110.3 REMARK 620 N 1 2 3 DBREF 9M62 A 1 124 UNP P19567 AZUP_ACHCY 29 152 DBREF 9M62 B 1 124 UNP P19567 AZUP_ACHCY 29 152 SEQADV 9M62 ARG A 16 UNP P19567 MET 44 VARIANT SEQADV 9M62 ARG B 16 UNP P19567 MET 44 VARIANT SEQRES 1 A 124 ALA ASP PHE GLU VAL HIS MET LEU ASN LYS GLY LYS ASP SEQRES 2 A 124 GLY ALA ARG VAL PHE GLU PRO ALA SER LEU LYS VAL ALA SEQRES 3 A 124 PRO GLY ASP THR VAL THR PHE ILE PRO THR ASP LYS GLY SEQRES 4 A 124 HIS ASN VAL GLU THR ILE LYS GLY MET ILE PRO ASP GLY SEQRES 5 A 124 ALA GLU ALA PHE LYS SER LYS ILE ASN GLU ASN TYR LYS SEQRES 6 A 124 VAL THR PHE THR ALA PRO GLY VAL TYR GLY VAL LYS CYS SEQRES 7 A 124 THR PRO HIS TYR GLY MET GLY MET VAL GLY VAL VAL GLN SEQRES 8 A 124 VAL GLY ASP ALA PRO ALA ASN LEU GLU ALA VAL LYS GLY SEQRES 9 A 124 ALA LYS ASN PRO LYS LYS ALA GLN GLU ARG LEU ASP ALA SEQRES 10 A 124 ALA LEU ALA ALA LEU GLY ASN SEQRES 1 B 124 ALA ASP PHE GLU VAL HIS MET LEU ASN LYS GLY LYS ASP SEQRES 2 B 124 GLY ALA ARG VAL PHE GLU PRO ALA SER LEU LYS VAL ALA SEQRES 3 B 124 PRO GLY ASP THR VAL THR PHE ILE PRO THR ASP LYS GLY SEQRES 4 B 124 HIS ASN VAL GLU THR ILE LYS GLY MET ILE PRO ASP GLY SEQRES 5 B 124 ALA GLU ALA PHE LYS SER LYS ILE ASN GLU ASN TYR LYS SEQRES 6 B 124 VAL THR PHE THR ALA PRO GLY VAL TYR GLY VAL LYS CYS SEQRES 7 B 124 THR PRO HIS TYR GLY MET GLY MET VAL GLY VAL VAL GLN SEQRES 8 B 124 VAL GLY ASP ALA PRO ALA ASN LEU GLU ALA VAL LYS GLY SEQRES 9 B 124 ALA LYS ASN PRO LYS LYS ALA GLN GLU ARG LEU ASP ALA SEQRES 10 B 124 ALA LEU ALA ALA LEU GLY ASN HET CU A 201 1 HET PO4 A 202 5 HET CU B 201 1 HETNAM CU COPPER (II) ION HETNAM PO4 PHOSPHATE ION FORMUL 3 CU 2(CU 2+) FORMUL 4 PO4 O4 P 3- FORMUL 6 HOH *474(H2 O) HELIX 1 AA1 HIS A 81 GLY A 85 5 5 HELIX 2 AA2 ASN A 98 ALA A 105 1 8 HELIX 3 AA3 PRO A 108 LEU A 122 1 15 HELIX 4 AA4 HIS B 81 GLY B 85 5 5 HELIX 5 AA5 ASN B 98 GLY B 104 1 7 HELIX 6 AA6 PRO B 108 LEU B 122 1 15 SHEET 1 AA1 4 GLY A 14 GLU A 19 0 SHEET 2 AA1 4 ASP A 2 GLY A 11 -1 N HIS A 6 O GLU A 19 SHEET 3 AA1 4 ASP A 29 ILE A 34 1 O ILE A 34 N VAL A 5 SHEET 4 AA1 4 TYR A 64 PHE A 68 -1 O TYR A 64 N PHE A 33 SHEET 1 AA2 4 SER A 22 VAL A 25 0 SHEET 2 AA2 4 VAL A 87 VAL A 92 1 O GLN A 91 N VAL A 25 SHEET 3 AA2 4 GLY A 72 LYS A 77 -1 N GLY A 72 O VAL A 92 SHEET 4 AA2 4 GLU A 43 THR A 44 -1 N GLU A 43 O LYS A 77 SHEET 1 AA3 4 GLY B 14 GLU B 19 0 SHEET 2 AA3 4 ASP B 2 GLY B 11 -1 N HIS B 6 O GLU B 19 SHEET 3 AA3 4 THR B 30 ILE B 34 1 O ILE B 34 N VAL B 5 SHEET 4 AA3 4 TYR B 64 THR B 67 -1 O TYR B 64 N PHE B 33 SHEET 1 AA4 4 SER B 22 VAL B 25 0 SHEET 2 AA4 4 VAL B 87 VAL B 92 1 O GLN B 91 N LEU B 23 SHEET 3 AA4 4 GLY B 72 LYS B 77 -1 N GLY B 72 O VAL B 92 SHEET 4 AA4 4 GLU B 43 THR B 44 -1 N GLU B 43 O LYS B 77 LINK ND1 HIS A 40 CU CU A 201 1555 1555 2.00 LINK SG CYS A 78 CU CU A 201 1555 1555 2.14 LINK ND1 HIS A 81 CU CU A 201 1555 1555 1.95 LINK SD MET A 86 CU CU A 201 1555 1555 2.53 LINK ND1 HIS B 40 CU CU B 201 1555 1555 2.08 LINK SG CYS B 78 CU CU B 201 1555 1555 2.22 LINK ND1 HIS B 81 CU CU B 201 1555 1555 2.09 LINK SD MET B 86 CU CU B 201 1555 1555 2.54 CISPEP 1 GLU A 19 PRO A 20 0 -5.82 CISPEP 2 GLU B 19 PRO B 20 0 -2.87 CRYST1 35.164 60.110 54.345 90.00 106.57 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028438 0.000000 0.008460 0.00000 SCALE2 0.000000 0.016636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019198 0.00000 CONECT 305 1856 CONECT 600 1856 CONECT 621 1856 CONECT 659 1856 CONECT 1237 1862 CONECT 1528 1862 CONECT 1549 1862 CONECT 1587 1862 CONECT 1856 305 600 621 659 CONECT 1857 1858 1859 1860 1861 CONECT 1858 1857 CONECT 1859 1857 CONECT 1860 1857 CONECT 1861 1857 CONECT 1862 1237 1528 1549 1587 MASTER 445 0 3 6 16 0 0 6 2313 2 15 20 END