data_9M69 # _entry.id 9M69 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9M69 pdb_00009m69 10.2210/pdb9m69/pdb WWPDB D_1300057219 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-09-16 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9M69 _pdbx_database_status.recvd_initial_deposition_date 2025-03-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, M.' 1 ? 'Huang, L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of xanthine/guanine RNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, M.' 1 ? primary 'Huang, L.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (42-MER)' 13470.997 2 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? 3 non-polymer syn XANTHINE 152.111 2 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 2 ? ? ? ? 5 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 6 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGAUGGCACGUGUAUUACCCUAGUGGUCGACGUGCCAUCGC _entity_poly.pdbx_seq_one_letter_code_can GCGAUGGCACGUGUAUUACCCUAGUGGUCGACGUGCCAUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 XANTHINE XAN 4 'SODIUM ION' NA 5 "GUANOSINE-5'-DIPHOSPHATE" GDP 6 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 U n 1 6 G n 1 7 G n 1 8 C n 1 9 A n 1 10 C n 1 11 G n 1 12 U n 1 13 G n 1 14 U n 1 15 A n 1 16 U n 1 17 U n 1 18 A n 1 19 C n 1 20 C n 1 21 C n 1 22 U n 1 23 A n 1 24 G n 1 25 U n 1 26 G n 1 27 G n 1 28 U n 1 29 C n 1 30 G n 1 31 A n 1 32 C n 1 33 G n 1 34 U n 1 35 G n 1 36 C n 1 37 C n 1 38 A n 1 39 U n 1 40 C n 1 41 G n 1 42 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 42 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 XAN non-polymer . XANTHINE ? 'C5 H4 N4 O2' 152.111 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 -4 ? ? ? A . n A 1 2 C 2 -3 -3 C C A . n A 1 3 G 3 -2 -2 G G A . n A 1 4 A 4 -1 -1 A A A . n A 1 5 U 5 0 0 U U A . n A 1 6 G 6 1 1 G G A . n A 1 7 G 7 2 2 G G A . n A 1 8 C 8 3 3 C C A . n A 1 9 A 9 4 4 A A A . n A 1 10 C 10 5 5 C C A . n A 1 11 G 11 6 6 G G A . n A 1 12 U 12 7 7 U U A . n A 1 13 G 13 8 8 G G A . n A 1 14 U 14 9 9 U U A . n A 1 15 A 15 10 10 A A A . n A 1 16 U 16 11 11 U U A . n A 1 17 U 17 12 12 U U A . n A 1 18 A 18 13 13 A A A . n A 1 19 C 19 14 14 C C A . n A 1 20 C 20 15 15 C C A . n A 1 21 C 21 16 16 C C A . n A 1 22 U 22 17 17 U U A . n A 1 23 A 23 18 18 A A A . n A 1 24 G 24 19 19 G G A . n A 1 25 U 25 20 20 U U A . n A 1 26 G 26 21 21 G G A . n A 1 27 G 27 22 22 G G A . n A 1 28 U 28 23 23 U U A . n A 1 29 C 29 24 24 C C A . n A 1 30 G 30 25 25 G G A . n A 1 31 A 31 26 26 A A A . n A 1 32 C 32 27 27 C C A . n A 1 33 G 33 28 28 G G A . n A 1 34 U 34 29 29 U U A . n A 1 35 G 35 30 30 G G A . n A 1 36 C 36 31 31 C C A . n A 1 37 C 37 32 32 C C A . n A 1 38 A 38 33 33 A A A . n A 1 39 U 39 34 34 U U A . n A 1 40 C 40 35 35 C C A . n A 1 41 G 41 36 36 G G A . n A 1 42 C 42 37 37 C C A . n B 1 1 G 1 -4 ? ? ? B . n B 1 2 C 2 -3 -3 C C B . n B 1 3 G 3 -2 -2 G G B . n B 1 4 A 4 -1 -1 A A B . n B 1 5 U 5 0 0 U U B . n B 1 6 G 6 1 1 G G B . n B 1 7 G 7 2 2 G G B . n B 1 8 C 8 3 3 C C B . n B 1 9 A 9 4 4 A A B . n B 1 10 C 10 5 5 C C B . n B 1 11 G 11 6 6 G G B . n B 1 12 U 12 7 7 U U B . n B 1 13 G 13 8 8 G G B . n B 1 14 U 14 9 9 U U B . n B 1 15 A 15 10 10 A A B . n B 1 16 U 16 11 11 U U B . n B 1 17 U 17 12 12 U U B . n B 1 18 A 18 13 13 A A B . n B 1 19 C 19 14 14 C C B . n B 1 20 C 20 15 15 C C B . n B 1 21 C 21 16 16 C C B . n B 1 22 U 22 17 17 U U B . n B 1 23 A 23 18 18 A A B . n B 1 24 G 24 19 19 G G B . n B 1 25 U 25 20 20 U U B . n B 1 26 G 26 21 21 G G B . n B 1 27 G 27 22 22 G G B . n B 1 28 U 28 23 23 U U B . n B 1 29 C 29 24 24 C C B . n B 1 30 G 30 25 25 G G B . n B 1 31 A 31 26 26 A A B . n B 1 32 C 32 27 27 C C B . n B 1 33 G 33 28 28 G G B . n B 1 34 U 34 29 29 U U B . n B 1 35 G 35 30 30 G G B . n B 1 36 C 36 31 31 C C B . n B 1 37 C 37 32 32 C C B . n B 1 38 A 38 33 33 A A B . n B 1 39 U 39 34 34 U U B . n B 1 40 C 40 35 35 C C B . n B 1 41 G 41 36 36 G G B . n B 1 42 C 42 37 37 C C B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id XAN _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id XAN _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP 1 101 -4 GTP GTP A . D 3 XAN 1 102 96 XAN XAN A . E 4 NA 1 103 1 NA NA A . F 5 GDP 1 101 -4 GDP GTP B . G 3 XAN 1 102 96 XAN XAN B . H 4 NA 1 103 2 NA NA B . I 6 HOH 1 201 166 HOH HOH A . I 6 HOH 2 202 244 HOH HOH A . I 6 HOH 3 203 222 HOH HOH A . I 6 HOH 4 204 40 HOH HOH A . I 6 HOH 5 205 285 HOH HOH A . I 6 HOH 6 206 93 HOH HOH A . I 6 HOH 7 207 172 HOH HOH A . I 6 HOH 8 208 71 HOH HOH A . I 6 HOH 9 209 53 HOH HOH A . I 6 HOH 10 210 273 HOH HOH A . I 6 HOH 11 211 88 HOH HOH A . I 6 HOH 12 212 283 HOH HOH A . I 6 HOH 13 213 81 HOH HOH A . I 6 HOH 14 214 219 HOH HOH A . I 6 HOH 15 215 165 HOH HOH A . I 6 HOH 16 216 248 HOH HOH A . I 6 HOH 17 217 143 HOH HOH A . I 6 HOH 18 218 212 HOH HOH A . I 6 HOH 19 219 128 HOH HOH A . I 6 HOH 20 220 7 HOH HOH A . I 6 HOH 21 221 132 HOH HOH A . I 6 HOH 22 222 103 HOH HOH A . I 6 HOH 23 223 82 HOH HOH A . I 6 HOH 24 224 48 HOH HOH A . I 6 HOH 25 225 87 HOH HOH A . I 6 HOH 26 226 167 HOH HOH A . I 6 HOH 27 227 250 HOH HOH A . I 6 HOH 28 228 56 HOH HOH A . J 6 HOH 1 201 18 HOH HOH B . J 6 HOH 2 202 149 HOH HOH B . J 6 HOH 3 203 146 HOH HOH B . J 6 HOH 4 204 89 HOH HOH B . J 6 HOH 5 205 233 HOH HOH B . J 6 HOH 6 206 201 HOH HOH B . J 6 HOH 7 207 255 HOH HOH B . J 6 HOH 8 208 272 HOH HOH B . J 6 HOH 9 209 54 HOH HOH B . J 6 HOH 10 210 36 HOH HOH B . J 6 HOH 11 211 186 HOH HOH B . J 6 HOH 12 212 13 HOH HOH B . J 6 HOH 13 213 150 HOH HOH B . J 6 HOH 14 214 15 HOH HOH B . J 6 HOH 15 215 213 HOH HOH B . J 6 HOH 16 216 164 HOH HOH B . J 6 HOH 17 217 268 HOH HOH B . J 6 HOH 18 218 35 HOH HOH B . J 6 HOH 19 219 142 HOH HOH B . J 6 HOH 20 220 147 HOH HOH B . J 6 HOH 21 221 140 HOH HOH B . J 6 HOH 22 222 156 HOH HOH B . J 6 HOH 23 223 246 HOH HOH B . J 6 HOH 24 224 134 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1-4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? autoPROC ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9M69 _cell.details ? _cell.formula_units_Z ? _cell.length_a 23.006 _cell.length_a_esd ? _cell.length_b 44.742 _cell.length_b_esd ? _cell.length_c 210.543 _cell.length_c_esd ? _cell.volume 216719.164 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9M69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9M69 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.01 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.84 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Potassium chloride 0.02 M Magnesium chloride hexahydrate 50% v/v (+/-)-2-Methy1-2,4-pentanediol 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-12-09 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97895 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97895 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 47.34 _reflns.entry_id 9M69 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.19 _reflns.d_resolution_low 105.27 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11672 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.2 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.073 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.993 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.164 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.19 _reflns_shell.d_res_low 2.30 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1401 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.939 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.476 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 80.3 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.266 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 57.28 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9M69 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.19 _refine.ls_d_res_low 34.09 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11359 _refine.ls_number_reflns_R_free 565 _refine.ls_number_reflns_R_work 10794 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 93.89 _refine.ls_percent_reflns_R_free 4.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2531 _refine.ls_R_factor_R_free 0.2959 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2509 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 40.7431 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.4482 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.19 _refine_hist.d_res_low 34.09 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1876 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1740 _refine_hist.pdbx_number_atoms_ligand 84 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0100 ? 2028 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.4627 ? 3153 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0589 ? 418 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0119 ? 86 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 25.1721 ? 1244 ? f_dihedral_angle_d ? ? # _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id d_2 _refine_ls_restr_ncs.pdbx_ens_id ens_1 _refine_ls_restr_ncs.rms_dev_position 0.763247744341 _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type 'Torsion NCS' _refine_ls_restr_ncs.pdbx_asym_id C _refine_ls_restr_ncs.pdbx_auth_asym_id A _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? _refine_ls_restr_ncs.ncs_model_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.19 2.41 . . 102 2255 80.33 . . . . 0.4020 . . . . . . . . . . . . . . . 0.4062 'X-RAY DIFFRACTION' 2.41 2.75 . . 167 2748 98.51 . . . . 0.3686 . . . . . . . . . . . . . . . 0.4145 'X-RAY DIFFRACTION' 2.75 3.47 . . 142 2764 96.67 . . . . 0.2911 . . . . . . . . . . . . . . . 0.3545 'X-RAY DIFFRACTION' 3.47 34.09 . . 154 3027 99.44 . . . . 0.1894 . . . . . . . . . . . . . . . 0.2282 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.matrix[1][1] -0.997330003988 _struct_ncs_oper.matrix[1][2] 0.0729609641217 _struct_ncs_oper.matrix[1][3] 0.00309206383842 _struct_ncs_oper.matrix[2][1] -0.0728426648908 _struct_ncs_oper.matrix[2][2] -0.990925655987 _struct_ncs_oper.matrix[2][3] -0.112961455724 _struct_ncs_oper.matrix[3][1] -0.00517777133075 _struct_ncs_oper.matrix[3][2] -0.112885083257 _struct_ncs_oper.matrix[3][3] 0.993594559497 _struct_ncs_oper.vector[1] -0.828004610462 _struct_ncs_oper.vector[2] 35.9029744053 _struct_ncs_oper.vector[3] -7.31121714704 _struct_ncs_oper.details ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and ((resid -4 and (name C1" or name C2 or name C2" or name C3" or name C4 or name C4" or name C5 or name C5" or name C6 or name C8 or name N1 or name N2 or name N3 or name N7 or name N9 or name O1A or name O1B or name O2" or name O2A or name O2B or name O3" or name O3A or name O3B or name O4" or name O5" or name O6 or name PA or name PB )) or resid -3 or (resid -2 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid -1 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 0 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 1 through 2 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 3 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 4 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 5 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 6 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 7 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 8 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 9 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 10 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 11 through 12 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 13 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 14 through 16 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 17 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 18 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 19 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 20 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 21 through 22 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 23 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 24 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 25 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 26 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 27 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 28 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 29 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 30 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 31 through 32 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 33 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 34 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 35 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 36 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 37 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 96 and (name C2 or name C4 or name C5 or name C6 or name C8 or name N1 or name N3 or name N7 or name N9 or name O2 or name O6 )))) ; ens_1 d_2 ;(chain "B" and (resid -4 through -3 or (resid -2 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid -1 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 0 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 1 through 2 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 3 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 4 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 5 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 6 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 7 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 8 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 9 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 10 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 11 through 12 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 13 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 14 through 16 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 17 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 18 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 19 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 20 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 21 through 22 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 23 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 24 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 25 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 26 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 27 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 28 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 29 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 30 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 31 through 32 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 33 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 34 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 35 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 36 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 37 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 96 and (name C2 or name C4 or name C5 or name C6 or name C8 or name N1 or name N3 or name N7 or name N9 or name O2 or name O6 )))) ; # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # _struct_ncs_ens_gen.ens_id ens_1 _struct_ncs_ens_gen.dom_id_1 d_2 _struct_ncs_ens_gen.dom_id_2 d_1 _struct_ncs_ens_gen.oper_id 1 # _struct.entry_id 9M69 _struct.title 'Crystal structure of xanthine/guanine RNA aptamer (P1 12bp) with xanthine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9M69 _struct_keywords.text 'xanthine/guanine RNA aptamer, xanthine, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 3 ? H N N 4 ? I N N 6 ? J N N 6 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9M69 _struct_ref.pdbx_db_accession 9M69 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9M69 A 1 ? 42 ? 9M69 -4 ? 37 ? -4 37 2 1 9M69 B 1 ? 42 ? 9M69 -4 ? 37 ? -4 37 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,I 1 2 B,F,G,H,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_545 -x,y-1/2,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 -22.3710000000 0.0000000000 0.0000000000 -1.0000000000 105.2715000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 2 P ? ? ? 1_555 C GTP . "O3'" ? ? A C -3 A GTP 101 1_555 ? ? ? ? ? ? ? 1.535 ? ? covale2 covale both ? B C 2 P ? ? ? 1_555 F GDP . "O3'" ? ? B C -3 B GDP 101 1_555 ? ? ? ? ? ? ? 1.556 ? ? metalc1 metalc ? ? A G 26 O6 ? ? ? 1_555 E NA . NA ? ? A G 21 A NA 103 1_555 ? ? ? ? ? ? ? 2.476 ? ? metalc2 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 103 A HOH 211 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc3 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 103 A HOH 223 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc4 metalc ? ? E NA . NA ? ? ? 1_555 I HOH . O ? ? A NA 103 A HOH 227 1_555 ? ? ? ? ? ? ? 2.742 ? ? metalc5 metalc ? ? B G 26 O6 ? ? ? 1_555 H NA . NA ? ? B G 21 B NA 103 1_555 ? ? ? ? ? ? ? 2.595 ? ? metalc6 metalc ? ? H NA . NA ? ? ? 1_555 J HOH . O ? ? B NA 103 B HOH 221 1_555 ? ? ? ? ? ? ? 2.073 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 41 N1 ? ? A C -3 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 41 O6 ? ? A C -3 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 41 N2 ? ? A C -3 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 40 N3 ? ? A G -2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 40 O2 ? ? A G -2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 40 N4 ? ? A G -2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 39 N3 ? ? A A -1 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 39 O4 ? ? A A -1 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 0 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 0 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 4 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 4 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 7 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 7 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 30 O6 ? ? A G 8 A G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog31 hydrog ? ? A G 13 O6 ? ? ? 1_555 A G 30 N1 ? ? A G 8 A G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog32 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 18 N7 ? ? A U 11 A A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 11 A A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog34 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 13 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 13 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 41 N1 ? ? B C -3 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 41 O6 ? ? B C -3 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 41 N2 ? ? B C -3 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 40 N3 ? ? B G -2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 40 O2 ? ? B G -2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 40 N4 ? ? B G -2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 39 N3 ? ? B A -1 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 39 O4 ? ? B A -1 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 38 N1 ? ? B U 0 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 38 N6 ? ? B U 0 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 37 N3 ? ? B G 1 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 37 O2 ? ? B G 1 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 37 N4 ? ? B G 1 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 36 N3 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 36 O2 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 36 N4 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 35 N1 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 35 O6 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 35 N2 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 34 N3 ? ? B A 4 B U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 34 O4 ? ? B A 4 B U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 33 N1 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 33 O6 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 33 N2 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 31 N1 ? ? B U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 31 N6 ? ? B U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B G 13 N1 ? ? ? 1_555 B G 30 O6 ? ? B G 8 B G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog75 hydrog ? ? B G 13 O6 ? ? ? 1_555 B G 30 N1 ? ? B G 8 B G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog76 hydrog ? ? B U 16 N3 ? ? ? 1_555 B A 18 N7 ? ? B U 11 B A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog77 hydrog ? ? B U 16 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 11 B A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog78 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 28 N3 ? ? B A 13 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 28 O4 ? ? B A 13 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 27 N1 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 27 O6 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 27 N2 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 26 N1 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 26 O6 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 26 N2 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B C 21 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 21 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 21 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A G 26 ? A G 21 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 211 ? 1_555 84.8 ? 2 O6 ? A G 26 ? A G 21 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 223 ? 1_555 125.1 ? 3 O ? I HOH . ? A HOH 211 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 223 ? 1_555 104.9 ? 4 O6 ? A G 26 ? A G 21 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 227 ? 1_555 119.3 ? 5 O ? I HOH . ? A HOH 211 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 227 ? 1_555 47.7 ? 6 O ? I HOH . ? A HOH 223 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? I HOH . ? A HOH 227 ? 1_555 58.4 ? 7 O6 ? B G 26 ? B G 21 ? 1_555 NA ? H NA . ? B NA 103 ? 1_555 O ? J HOH . ? B HOH 221 ? 1_555 114.4 ? # _pdbx_entry_details.entry_id 9M69 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 N7 B A 18 ? ? O B HOH 201 ? ? 1.73 2 1 "O2'" A U 12 ? ? O A HOH 201 ? ? 1.94 3 1 O1A B GDP 101 ? ? O B HOH 202 ? ? 1.94 4 1 N7 B GDP 101 ? ? O B HOH 203 ? ? 2.04 5 1 O4 B U 29 ? ? O B HOH 204 ? ? 2.05 6 1 OP1 A A 13 ? ? O A HOH 202 ? ? 2.07 7 1 OP1 A G 21 ? ? O A HOH 203 ? ? 2.10 8 1 O6 A G 1 ? ? O A HOH 204 ? ? 2.10 9 1 O A HOH 211 ? ? O A HOH 220 ? ? 2.11 10 1 O A HOH 211 ? ? O A HOH 227 ? ? 2.12 11 1 O2 B U 29 ? ? O B HOH 205 ? ? 2.13 12 1 OP1 A C -3 ? ? "O3'" A GTP 101 ? ? 2.16 13 1 O6 B G 30 ? ? O B HOH 204 ? ? 2.18 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C5 A A 10 ? ? C6 A A 10 ? ? N1 A A 10 ? ? 121.02 117.70 3.32 0.50 N 2 1 C4 A A 18 ? ? C5 A A 18 ? ? N7 A A 18 ? ? 114.85 110.70 4.15 0.50 N 3 1 C5 A A 18 ? ? N7 A A 18 ? ? C8 A A 18 ? ? 99.52 103.90 -4.38 0.50 N 4 1 N1 A A 18 ? ? C6 A A 18 ? ? N6 A A 18 ? ? 123.27 118.60 4.67 0.60 N 5 1 C5 A A 18 ? ? C6 A A 18 ? ? N6 A A 18 ? ? 118.13 123.70 -5.57 0.80 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 5.64770218829 2.02759393493 95.361782471 0.362337181591 ? 0.0914377394594 ? -0.0419500283236 ? 0.870897769058 ? -0.0732085187416 ? 0.446272816349 ? 1.39636455834 ? 0.00533565844712 ? 0.521242309573 ? 5.16076117918 ? 0.878740673904 ? 2.11191668624 ? 0.330507214742 ? -0.373899328578 ? -0.142350610011 ? -0.62705469664 ? -0.356414544776 ? 0.167180166533 ? -0.0736148111419 ? -0.391498439373 ? -0.0258786483222 ? 2 'X-RAY DIFFRACTION' ? refined 5.45179189817 -0.614926102477 76.0503565269 0.834675594779 ? 0.0588517106172 ? -0.0123509184589 ? 0.60197582157 ? 0.0162936766838 ? 0.457293301951 ? 0.531495006982 ? -0.0835013513862 ? -0.284545234832 ? 0.682764786876 ? 1.08675152753 ? 2.07044099671 ? -0.249849573071 ? -0.568996907421 ? -0.0694053849748 ? -0.844643199628 ? 0.457779158517 ? -0.104135381435 ? -0.533523206581 ? 0.144100829711 ? -0.176792411974 ? 3 'X-RAY DIFFRACTION' ? refined -3.98386533237 25.5558402971 78.1670230151 0.702477321082 ? 0.0893856500361 ? 0.0667856206751 ? 0.60397000064 ? 0.0235855646899 ? 0.448055821863 ? 2.58060755945 ? -0.377977469448 ? -0.958311230595 ? 0.108386115262 ? -0.0607653116739 ? 1.02141675877 ? -0.177549295404 ? -1.08517153727 ? -0.179822296764 ? -0.469649952548 ? 0.220254827444 ? -0.0882628126804 ? 0.123854229862 ? 0.180468501291 ? 0.0942004213529 ? 4 'X-RAY DIFFRACTION' ? refined -7.12509538913 25.5815473716 74.9216750712 0.643059412864 ? 0.10256341424 ? -0.0354950420974 ? 0.62859823754 ? -0.0424856020489 ? 0.437830179918 ? 1.27994686483 ? 0.208631134929 ? -1.18645419375 ? 1.85244191315 ? -0.934518709251 ? 3.35801643581 ? 0.0080480055809 ? -0.445961292256 ? -0.147169928955 ? -0.78154006764 ? -0.128341539473 ? 0.0840032320522 ? 0.118792649862 ? 0.765403960811 ? 0.0710578017498 ? 5 'X-RAY DIFFRACTION' ? refined 1.52870665628 -2.52470086382 68.0814840078 1.03796141237 ? 0.00311595049956 ? -0.063106037777 ? 0.309869450667 ? -0.0385077548781 ? 0.364628624828 ? 3.05538371307 ? -1.31822970277 ? -0.150201948443 ? 1.98999392141 ? -2.1748442635 ? 3.55169858232 ? 0.414156267325 ? -0.195039825661 ? -0.257236344375 ? 0.12360521814 ? 0.0621022868498 ? 0.0879302989902 ? -0.33859511667 ? 0.403369059151 ? -0.428542526191 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 B ? A 2 ? B ? A 21 ? ? ;chain 'A' and (resid 2 through 21 ) ; 2 'X-RAY DIFFRACTION' 2 B ? A 22 ? B ? A 37 ? ? ;chain 'A' and (resid 22 through 37 ) ; 3 'X-RAY DIFFRACTION' 3 E ? B -3 ? E ? B 16 ? ? ;chain 'B' and (resid -3 through 16 ) ; 4 'X-RAY DIFFRACTION' 4 E ? B 17 ? E ? B 37 ? ? ;chain 'B' and (resid 17 through 37 ) ; 5 'X-RAY DIFFRACTION' 5 B ? A -3 ? B ? A 1 ? ? ;chain 'A' and (resid -3 through 1 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G -4 ? A G 1 2 1 Y 1 B G -4 ? B G 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GDP PB P N N 111 GDP O1B O N N 112 GDP O2B O N N 113 GDP O3B O N N 114 GDP O3A O N N 115 GDP PA P N N 116 GDP O1A O N N 117 GDP O2A O N N 118 GDP "O5'" O N N 119 GDP "C5'" C N N 120 GDP "C4'" C N R 121 GDP "O4'" O N N 122 GDP "C3'" C N S 123 GDP "O3'" O N N 124 GDP "C2'" C N R 125 GDP "O2'" O N N 126 GDP "C1'" C N R 127 GDP N9 N Y N 128 GDP C8 C Y N 129 GDP N7 N Y N 130 GDP C5 C Y N 131 GDP C6 C N N 132 GDP O6 O N N 133 GDP N1 N N N 134 GDP C2 C N N 135 GDP N2 N N N 136 GDP N3 N N N 137 GDP C4 C Y N 138 GDP HOB2 H N N 139 GDP HOB3 H N N 140 GDP HOA2 H N N 141 GDP "H5'" H N N 142 GDP "H5''" H N N 143 GDP "H4'" H N N 144 GDP "H3'" H N N 145 GDP "HO3'" H N N 146 GDP "H2'" H N N 147 GDP "HO2'" H N N 148 GDP "H1'" H N N 149 GDP H8 H N N 150 GDP HN1 H N N 151 GDP HN21 H N N 152 GDP HN22 H N N 153 GTP PG P N N 154 GTP O1G O N N 155 GTP O2G O N N 156 GTP O3G O N N 157 GTP O3B O N N 158 GTP PB P N N 159 GTP O1B O N N 160 GTP O2B O N N 161 GTP O3A O N N 162 GTP PA P N N 163 GTP O1A O N N 164 GTP O2A O N N 165 GTP "O5'" O N N 166 GTP "C5'" C N N 167 GTP "C4'" C N R 168 GTP "O4'" O N N 169 GTP "C3'" C N S 170 GTP "O3'" O N N 171 GTP "C2'" C N R 172 GTP "O2'" O N N 173 GTP "C1'" C N R 174 GTP N9 N Y N 175 GTP C8 C Y N 176 GTP N7 N Y N 177 GTP C5 C Y N 178 GTP C6 C N N 179 GTP O6 O N N 180 GTP N1 N N N 181 GTP C2 C N N 182 GTP N2 N N N 183 GTP N3 N N N 184 GTP C4 C Y N 185 GTP HOG2 H N N 186 GTP HOG3 H N N 187 GTP HOB2 H N N 188 GTP HOA2 H N N 189 GTP "H5'" H N N 190 GTP "H5''" H N N 191 GTP "H4'" H N N 192 GTP "H3'" H N N 193 GTP "HO3'" H N N 194 GTP "H2'" H N N 195 GTP "HO2'" H N N 196 GTP "H1'" H N N 197 GTP H8 H N N 198 GTP HN1 H N N 199 GTP HN21 H N N 200 GTP HN22 H N N 201 HOH O O N N 202 HOH H1 H N N 203 HOH H2 H N N 204 NA NA NA N N 205 U OP3 O N N 206 U P P N N 207 U OP1 O N N 208 U OP2 O N N 209 U "O5'" O N N 210 U "C5'" C N N 211 U "C4'" C N R 212 U "O4'" O N N 213 U "C3'" C N S 214 U "O3'" O N N 215 U "C2'" C N R 216 U "O2'" O N N 217 U "C1'" C N R 218 U N1 N N N 219 U C2 C N N 220 U O2 O N N 221 U N3 N N N 222 U C4 C N N 223 U O4 O N N 224 U C5 C N N 225 U C6 C N N 226 U HOP3 H N N 227 U HOP2 H N N 228 U "H5'" H N N 229 U "H5''" H N N 230 U "H4'" H N N 231 U "H3'" H N N 232 U "HO3'" H N N 233 U "H2'" H N N 234 U "HO2'" H N N 235 U "H1'" H N N 236 U H3 H N N 237 U H5 H N N 238 U H6 H N N 239 XAN N9 N Y N 240 XAN C4 C Y N 241 XAN N3 N Y N 242 XAN C2 C Y N 243 XAN O2 O N N 244 XAN N1 N Y N 245 XAN C6 C Y N 246 XAN O6 O N N 247 XAN C5 C Y N 248 XAN N7 N Y N 249 XAN C8 C Y N 250 XAN HN9 H N N 251 XAN HN3 H N N 252 XAN HN1 H N N 253 XAN H8 H N N 254 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GDP PB O1B doub N N 116 GDP PB O2B sing N N 117 GDP PB O3B sing N N 118 GDP PB O3A sing N N 119 GDP O2B HOB2 sing N N 120 GDP O3B HOB3 sing N N 121 GDP O3A PA sing N N 122 GDP PA O1A doub N N 123 GDP PA O2A sing N N 124 GDP PA "O5'" sing N N 125 GDP O2A HOA2 sing N N 126 GDP "O5'" "C5'" sing N N 127 GDP "C5'" "C4'" sing N N 128 GDP "C5'" "H5'" sing N N 129 GDP "C5'" "H5''" sing N N 130 GDP "C4'" "O4'" sing N N 131 GDP "C4'" "C3'" sing N N 132 GDP "C4'" "H4'" sing N N 133 GDP "O4'" "C1'" sing N N 134 GDP "C3'" "O3'" sing N N 135 GDP "C3'" "C2'" sing N N 136 GDP "C3'" "H3'" sing N N 137 GDP "O3'" "HO3'" sing N N 138 GDP "C2'" "O2'" sing N N 139 GDP "C2'" "C1'" sing N N 140 GDP "C2'" "H2'" sing N N 141 GDP "O2'" "HO2'" sing N N 142 GDP "C1'" N9 sing N N 143 GDP "C1'" "H1'" sing N N 144 GDP N9 C8 sing Y N 145 GDP N9 C4 sing Y N 146 GDP C8 N7 doub Y N 147 GDP C8 H8 sing N N 148 GDP N7 C5 sing Y N 149 GDP C5 C6 sing N N 150 GDP C5 C4 doub Y N 151 GDP C6 O6 doub N N 152 GDP C6 N1 sing N N 153 GDP N1 C2 sing N N 154 GDP N1 HN1 sing N N 155 GDP C2 N2 sing N N 156 GDP C2 N3 doub N N 157 GDP N2 HN21 sing N N 158 GDP N2 HN22 sing N N 159 GDP N3 C4 sing N N 160 GTP PG O1G doub N N 161 GTP PG O2G sing N N 162 GTP PG O3G sing N N 163 GTP PG O3B sing N N 164 GTP O2G HOG2 sing N N 165 GTP O3G HOG3 sing N N 166 GTP O3B PB sing N N 167 GTP PB O1B doub N N 168 GTP PB O2B sing N N 169 GTP PB O3A sing N N 170 GTP O2B HOB2 sing N N 171 GTP O3A PA sing N N 172 GTP PA O1A doub N N 173 GTP PA O2A sing N N 174 GTP PA "O5'" sing N N 175 GTP O2A HOA2 sing N N 176 GTP "O5'" "C5'" sing N N 177 GTP "C5'" "C4'" sing N N 178 GTP "C5'" "H5'" sing N N 179 GTP "C5'" "H5''" sing N N 180 GTP "C4'" "O4'" sing N N 181 GTP "C4'" "C3'" sing N N 182 GTP "C4'" "H4'" sing N N 183 GTP "O4'" "C1'" sing N N 184 GTP "C3'" "O3'" sing N N 185 GTP "C3'" "C2'" sing N N 186 GTP "C3'" "H3'" sing N N 187 GTP "O3'" "HO3'" sing N N 188 GTP "C2'" "O2'" sing N N 189 GTP "C2'" "C1'" sing N N 190 GTP "C2'" "H2'" sing N N 191 GTP "O2'" "HO2'" sing N N 192 GTP "C1'" N9 sing N N 193 GTP "C1'" "H1'" sing N N 194 GTP N9 C8 sing Y N 195 GTP N9 C4 sing Y N 196 GTP C8 N7 doub Y N 197 GTP C8 H8 sing N N 198 GTP N7 C5 sing Y N 199 GTP C5 C6 sing N N 200 GTP C5 C4 doub Y N 201 GTP C6 O6 doub N N 202 GTP C6 N1 sing N N 203 GTP N1 C2 sing N N 204 GTP N1 HN1 sing N N 205 GTP C2 N2 sing N N 206 GTP C2 N3 doub N N 207 GTP N2 HN21 sing N N 208 GTP N2 HN22 sing N N 209 GTP N3 C4 sing N N 210 HOH O H1 sing N N 211 HOH O H2 sing N N 212 U OP3 P sing N N 213 U OP3 HOP3 sing N N 214 U P OP1 doub N N 215 U P OP2 sing N N 216 U P "O5'" sing N N 217 U OP2 HOP2 sing N N 218 U "O5'" "C5'" sing N N 219 U "C5'" "C4'" sing N N 220 U "C5'" "H5'" sing N N 221 U "C5'" "H5''" sing N N 222 U "C4'" "O4'" sing N N 223 U "C4'" "C3'" sing N N 224 U "C4'" "H4'" sing N N 225 U "O4'" "C1'" sing N N 226 U "C3'" "O3'" sing N N 227 U "C3'" "C2'" sing N N 228 U "C3'" "H3'" sing N N 229 U "O3'" "HO3'" sing N N 230 U "C2'" "O2'" sing N N 231 U "C2'" "C1'" sing N N 232 U "C2'" "H2'" sing N N 233 U "O2'" "HO2'" sing N N 234 U "C1'" N1 sing N N 235 U "C1'" "H1'" sing N N 236 U N1 C2 sing N N 237 U N1 C6 sing N N 238 U C2 O2 doub N N 239 U C2 N3 sing N N 240 U N3 C4 sing N N 241 U N3 H3 sing N N 242 U C4 O4 doub N N 243 U C4 C5 sing N N 244 U C5 C6 doub N N 245 U C5 H5 sing N N 246 U C6 H6 sing N N 247 XAN N9 C4 sing Y N 248 XAN N9 C8 sing Y N 249 XAN N9 HN9 sing N N 250 XAN C4 N3 sing Y N 251 XAN C4 C5 doub Y N 252 XAN N3 C2 sing Y N 253 XAN N3 HN3 sing N N 254 XAN C2 O2 doub N N 255 XAN C2 N1 sing Y N 256 XAN N1 C6 sing Y N 257 XAN N1 HN1 sing N N 258 XAN C6 O6 doub N N 259 XAN C6 C5 sing Y N 260 XAN C5 N7 sing Y N 261 XAN N7 C8 doub Y N 262 XAN C8 H8 sing N N 263 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9M69 'double helix' 9M69 'a-form double helix' 9M69 'hairpin loop' 9M69 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 A G 41 1_555 0.310 -0.229 -0.134 4.475 -10.962 -0.315 1 A_C-3:G36_A A -3 ? A 36 ? 19 1 1 A G 3 1_555 A C 40 1_555 -0.159 -0.111 0.139 -3.125 -9.475 0.904 2 A_G-2:C35_A A -2 ? A 35 ? 19 1 1 A A 4 1_555 A U 39 1_555 -0.111 -0.198 0.230 1.785 -2.831 0.284 3 A_A-1:U34_A A -1 ? A 34 ? 20 1 1 A U 5 1_555 A A 38 1_555 -0.030 -0.246 0.240 2.731 -2.975 0.879 4 A_U0:A33_A A 0 ? A 33 ? 20 1 1 A G 6 1_555 A C 37 1_555 -0.264 -0.173 -0.017 -7.553 -12.440 1.500 5 A_G1:C32_A A 1 ? A 32 ? 19 1 1 A G 7 1_555 A C 36 1_555 -0.207 -0.157 0.116 -5.582 -7.481 -0.682 6 A_G2:C31_A A 2 ? A 31 ? 19 1 1 A C 8 1_555 A G 35 1_555 0.224 -0.143 0.251 -2.141 -7.630 1.087 7 A_C3:G30_A A 3 ? A 30 ? 19 1 1 A A 9 1_555 A U 34 1_555 -0.061 -0.121 0.165 -2.671 -11.056 2.461 8 A_A4:U29_A A 4 ? A 29 ? 20 1 1 A C 10 1_555 A G 33 1_555 0.234 -0.170 0.237 2.940 -10.876 0.252 9 A_C5:G28_A A 5 ? A 28 ? 19 1 1 A G 11 1_555 A C 32 1_555 -0.188 -0.149 0.042 -8.938 -10.247 -0.592 10 A_G6:C27_A A 6 ? A 27 ? 19 1 1 A U 12 1_555 A A 31 1_555 0.037 -0.081 0.576 -3.666 -9.881 1.803 11 A_U7:A26_A A 7 ? A 26 ? 20 1 1 A G 13 1_555 A G 30 1_555 1.285 0.959 -0.398 -17.980 1.803 -174.217 12 A_G8:G25_A A 8 ? A 25 ? 3 2 1 A A 18 1_555 A U 28 1_555 0.108 -0.089 -0.023 -0.389 -1.953 1.077 13 A_A13:U23_A A 13 ? A 23 ? 20 1 1 A C 19 1_555 A G 27 1_555 0.234 -0.189 -0.102 4.345 -3.481 2.285 14 A_C14:G22_A A 14 ? A 22 ? 19 1 1 A C 20 1_555 A G 26 1_555 0.164 -0.169 0.324 -1.202 -0.016 -1.756 15 A_C15:G21_A A 15 ? A 21 ? 19 1 1 A C 21 1_555 A G 24 1_555 0.268 -0.043 0.214 4.310 1.319 2.329 16 A_C16:G19_A A 16 ? A 19 ? 19 1 1 B C 2 1_555 B G 41 1_555 0.110 -0.084 0.384 1.779 -9.495 -0.019 17 B_C-3:G36_B B -3 ? B 36 ? 19 1 1 B G 3 1_555 B C 40 1_555 -0.188 -0.118 0.321 3.339 -12.110 -3.183 18 B_G-2:C35_B B -2 ? B 35 ? 19 1 1 B A 4 1_555 B U 39 1_555 -0.046 -0.109 0.503 5.787 -11.640 2.818 19 B_A-1:U34_B B -1 ? B 34 ? 20 1 1 B U 5 1_555 B A 38 1_555 -0.005 -0.060 0.117 3.233 -9.654 1.597 20 B_U0:A33_B B 0 ? B 33 ? 20 1 1 B G 6 1_555 B C 37 1_555 -0.182 -0.104 0.229 -6.099 -10.106 -0.673 21 B_G1:C32_B B 1 ? B 32 ? 19 1 1 B G 7 1_555 B C 36 1_555 -0.256 -0.152 0.253 -0.603 -8.164 1.904 22 B_G2:C31_B B 2 ? B 31 ? 19 1 1 B C 8 1_555 B G 35 1_555 0.255 -0.126 0.294 3.400 -5.334 1.527 23 B_C3:G30_B B 3 ? B 30 ? 19 1 1 B A 9 1_555 B U 34 1_555 0.060 -0.034 -0.125 -3.292 -13.346 1.638 24 B_A4:U29_B B 4 ? B 29 ? 20 1 1 B C 10 1_555 B G 33 1_555 0.207 -0.203 0.439 -1.270 -11.019 -0.135 25 B_C5:G28_B B 5 ? B 28 ? 19 1 1 B G 11 1_555 B C 32 1_555 -0.251 -0.079 -0.106 -11.606 -18.599 2.007 26 B_G6:C27_B B 6 ? B 27 ? 19 1 1 B U 12 1_555 B A 31 1_555 -0.004 -0.018 -0.021 -3.064 -12.869 0.227 27 B_U7:A26_B B 7 ? B 26 ? 20 1 1 B G 13 1_555 B G 30 1_555 1.466 1.377 -0.433 -17.876 4.741 -175.607 28 B_G8:G25_B B 8 ? B 25 ? 3 2 1 B A 18 1_555 B U 28 1_555 0.129 -0.128 -0.015 0.171 -2.687 1.545 29 B_A13:U23_B B 13 ? B 23 ? 20 1 1 B C 19 1_555 B G 27 1_555 0.274 -0.179 -0.272 3.811 -11.623 2.961 30 B_C14:G22_B B 14 ? B 22 ? 19 1 1 B C 20 1_555 B G 26 1_555 0.270 -0.100 0.266 -3.611 0.275 0.426 31 B_C15:G21_B B 15 ? B 21 ? 19 1 1 B C 21 1_555 B G 24 1_555 0.191 -0.057 0.015 6.118 3.725 2.528 32 B_C16:G19_B B 16 ? B 19 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 A G 41 1_555 A G 3 1_555 A C 40 1_555 0.526 -1.680 3.209 -0.301 10.518 30.346 -4.738 -1.001 2.497 19.375 0.555 32.078 1 AA_C-3G-2:C35G36_AA A -3 ? A 36 ? A -2 ? A 35 ? 1 A G 3 1_555 A C 40 1_555 A A 4 1_555 A U 39 1_555 -0.677 -1.554 3.080 -1.599 4.444 34.137 -3.257 0.915 2.888 7.525 2.708 34.452 2 AA_G-2A-1:U34C35_AA A -2 ? A 35 ? A -1 ? A 34 ? 1 A A 4 1_555 A U 39 1_555 A U 5 1_555 A A 38 1_555 0.187 -1.250 3.265 0.163 10.034 30.296 -3.994 -0.312 2.723 18.569 -0.301 31.878 3 AA_A-1U0:A33U34_AA A -1 ? A 34 ? A 0 ? A 33 ? 1 A U 5 1_555 A A 38 1_555 A G 6 1_555 A C 37 1_555 0.516 -1.561 3.292 3.507 14.073 33.252 -4.344 -0.375 2.491 23.265 -5.797 36.195 4 AA_U0G1:C32A33_AA A 0 ? A 33 ? A 1 ? A 32 ? 1 A G 6 1_555 A C 37 1_555 A G 7 1_555 A C 36 1_555 -0.444 -1.594 3.106 -2.299 4.473 31.000 -3.720 0.423 2.878 8.301 4.266 31.396 5 AA_G1G2:C31C32_AA A 1 ? A 32 ? A 2 ? A 31 ? 1 A G 7 1_555 A C 36 1_555 A C 8 1_555 A G 35 1_555 0.232 -1.355 3.154 -1.064 4.284 36.107 -2.731 -0.512 2.972 6.881 1.709 36.367 6 AA_G2C3:G30C31_AA A 2 ? A 31 ? A 3 ? A 30 ? 1 A C 8 1_555 A G 35 1_555 A A 9 1_555 A U 34 1_555 -0.118 -1.450 3.097 1.577 12.603 30.028 -4.484 0.447 2.309 23.070 -2.886 32.547 7 AA_C3A4:U29G30_AA A 3 ? A 30 ? A 4 ? A 29 ? 1 A A 9 1_555 A U 34 1_555 A C 10 1_555 A G 33 1_555 0.334 -1.263 3.114 -0.922 7.170 33.282 -3.200 -0.705 2.780 12.338 1.586 34.036 8 AA_A4C5:G28U29_AA A 4 ? A 29 ? A 5 ? A 28 ? 1 A C 10 1_555 A G 33 1_555 A G 11 1_555 A C 32 1_555 0.124 -1.758 3.209 1.860 14.415 31.040 -4.972 0.045 2.204 25.272 -3.261 34.198 9 AA_C5G6:C27G28_AA A 5 ? A 28 ? A 6 ? A 27 ? 1 A G 11 1_555 A C 32 1_555 A U 12 1_555 A A 31 1_555 0.169 -1.256 3.182 -0.451 2.882 32.823 -2.684 -0.372 3.061 5.088 0.796 32.949 10 AA_G6U7:A26C27_AA A 6 ? A 27 ? A 7 ? A 26 ? 1 A U 12 1_555 A A 31 1_555 A G 13 1_555 A G 30 1_555 2.822 -1.333 -1.071 -86.317 -149.219 -39.200 0.305 1.623 -0.116 76.798 -44.424 -172.827 11 AA_U7G8:G25A26_AA A 7 ? A 26 ? A 8 ? A 25 ? 1 A G 13 1_555 A G 30 1_555 A A 18 1_555 A U 28 1_555 -3.867 5.347 -1.743 -159.956 -19.765 -92.047 -2.819 -0.908 -3.456 10.203 -82.568 -166.957 12 AA_G8A13:U23G25_AA A 8 ? A 25 ? A 13 ? A 23 ? 1 A A 18 1_555 A U 28 1_555 A C 19 1_555 A G 27 1_555 0.265 -1.868 3.093 0.771 2.619 32.759 -3.715 -0.346 2.945 4.634 -1.364 32.869 13 AA_A13C14:G22U23_AA A 13 ? A 23 ? A 14 ? A 22 ? 1 A C 19 1_555 A G 27 1_555 A C 20 1_555 A G 26 1_555 -0.589 -2.089 3.312 -2.371 8.612 32.071 -4.999 0.657 2.711 15.222 4.191 33.260 14 AA_C14C15:G21G22_AA A 14 ? A 22 ? A 15 ? A 21 ? 1 A C 20 1_555 A G 26 1_555 A C 21 1_555 A G 24 1_555 -0.558 -1.764 3.108 2.868 -0.718 16.756 -5.524 3.639 3.042 -2.439 -9.743 17.013 15 AA_C15C16:G19G21_AA A 15 ? A 21 ? A 16 ? A 19 ? 1 B C 2 1_555 B G 41 1_555 B G 3 1_555 B C 40 1_555 -1.060 -1.802 3.014 -4.113 9.477 28.562 -5.082 1.315 2.431 18.463 8.013 30.337 16 BB_C-3G-2:C35G36_BB B -3 ? B 36 ? B -2 ? B 35 ? 1 B G 3 1_555 B C 40 1_555 B A 4 1_555 B U 39 1_555 0.433 -1.606 3.005 -2.496 7.061 34.773 -3.524 -1.024 2.603 11.648 4.117 35.546 17 BB_G-2A-1:U34C35_BB B -2 ? B 35 ? B -1 ? B 34 ? 1 B A 4 1_555 B U 39 1_555 B U 5 1_555 B A 38 1_555 0.045 -1.328 3.340 1.026 3.923 31.489 -3.146 0.105 3.156 7.191 -1.882 31.742 18 BB_A-1U0:A33U34_BB B -1 ? B 34 ? B 0 ? B 33 ? 1 B U 5 1_555 B A 38 1_555 B G 6 1_555 B C 37 1_555 -0.090 -1.652 3.220 -1.559 11.969 32.338 -4.463 -0.066 2.473 20.616 2.685 34.460 19 BB_U0G1:C32A33_BB B 0 ? B 33 ? B 1 ? B 32 ? 1 B G 6 1_555 B C 37 1_555 B G 7 1_555 B C 36 1_555 -0.118 -1.597 3.029 0.424 6.639 28.997 -4.327 0.307 2.605 13.043 -0.834 29.735 20 BB_G1G2:C31C32_BB B 1 ? B 32 ? B 2 ? B 31 ? 1 B G 7 1_555 B C 36 1_555 B C 8 1_555 B G 35 1_555 0.187 -1.300 3.128 -1.009 3.577 36.593 -2.518 -0.424 2.986 5.680 1.602 36.775 21 BB_G2C3:G30C31_BB B 2 ? B 31 ? B 3 ? B 30 ? 1 B C 8 1_555 B G 35 1_555 B A 9 1_555 B U 34 1_555 -0.471 -1.662 3.113 3.888 17.037 28.913 -5.125 1.328 1.806 30.826 -7.035 33.687 22 BB_C3A4:U29G30_BB B 3 ? B 30 ? B 4 ? B 29 ? 1 B A 9 1_555 B U 34 1_555 B C 10 1_555 B G 33 1_555 0.227 -1.368 3.182 -4.304 3.656 33.546 -2.892 -1.040 2.969 6.279 7.393 34.005 23 BB_A4C5:G28U29_BB B 4 ? B 29 ? B 5 ? B 28 ? 1 B C 10 1_555 B G 33 1_555 B G 11 1_555 B C 32 1_555 0.185 -1.727 3.245 5.202 14.450 30.899 -4.916 0.407 2.242 25.260 -9.094 34.422 24 BB_C5G6:C27G28_BB B 5 ? B 28 ? B 6 ? B 27 ? 1 B G 11 1_555 B C 32 1_555 B U 12 1_555 B A 31 1_555 -0.276 -1.065 3.040 -0.611 3.386 32.025 -2.471 0.398 2.919 6.115 1.103 32.204 25 BB_G6U7:A26C27_BB B 6 ? B 27 ? B 7 ? B 26 ? 1 B U 12 1_555 B A 31 1_555 B G 13 1_555 B G 30 1_555 2.702 -1.431 -1.317 -88.195 -154.252 11.859 -1.323 -1.004 -0.234 -78.027 44.613 177.698 26 BB_U7G8:G25A26_BB B 7 ? B 26 ? B 8 ? B 25 ? 1 B G 13 1_555 B G 30 1_555 B A 18 1_555 B U 28 1_555 -4.085 5.294 -1.477 -158.537 -23.846 -79.144 -2.842 -0.917 -3.441 12.449 -82.764 -164.861 27 BB_G8A13:U23G25_BB B 8 ? B 25 ? B 13 ? B 23 ? 1 B A 18 1_555 B U 28 1_555 B C 19 1_555 B G 27 1_555 0.159 -1.797 3.130 2.137 3.866 33.683 -3.651 0.045 2.916 6.636 -3.668 33.963 28 BB_A13C14:G22U23_BB B 13 ? B 23 ? B 14 ? B 22 ? 1 B C 19 1_555 B G 27 1_555 B C 20 1_555 B G 26 1_555 -0.561 -1.960 3.369 -3.538 7.207 32.776 -4.523 0.406 2.927 12.539 6.156 33.719 29 BB_C14C15:G21G22_BB B 14 ? B 22 ? B 15 ? B 21 ? 1 B C 20 1_555 B G 26 1_555 B C 21 1_555 B G 24 1_555 -0.516 -1.693 3.077 2.467 -1.640 16.962 -4.671 3.206 3.119 -5.505 -8.281 17.217 30 BB_C15C16:G19G21_BB B 15 ? B 21 ? B 16 ? B 19 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details RNAComposer # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9M69 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.043467 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022350 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004750 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #