data_9M6D # _entry.id 9M6D # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.417 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9M6D pdb_00009m6d 10.2210/pdb9m6d/pdb WWPDB D_1300057221 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2026-09-16 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9M6D _pdbx_database_status.recvd_initial_deposition_date 2025-03-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBC _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 3 _pdbx_contact_author.email huanglin36@mail.sysu.edu.cn _pdbx_contact_author.name_first Lin _pdbx_contact_author.name_last Huang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2121-365X # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Li, M.' 1 ? 'Huang, L.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal structure of xanthine/guanine RNA aptamer' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, M.' 1 ? primary 'Huang, L.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (42-MER)' 13470.997 2 ? ? ? ? 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 2 ? ? ? ? 3 non-polymer syn '3-methyl-7~{H}-purine-2,6-dione' 166.137 2 ? ? ? ? 4 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 5 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GCGAUGGCACGUGUAUUACCCUAGUGGUCGACGUGCCAUCGC _entity_poly.pdbx_seq_one_letter_code_can GCGAUGGCACGUGUAUUACCCUAGUGGUCGACGUGCCAUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-TRIPHOSPHATE" GTP 3 '3-methyl-7~{H}-purine-2,6-dione' I7U 4 'SODIUM ION' NA 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 A n 1 5 U n 1 6 G n 1 7 G n 1 8 C n 1 9 A n 1 10 C n 1 11 G n 1 12 U n 1 13 G n 1 14 U n 1 15 A n 1 16 U n 1 17 U n 1 18 A n 1 19 C n 1 20 C n 1 21 C n 1 22 U n 1 23 A n 1 24 G n 1 25 U n 1 26 G n 1 27 G n 1 28 U n 1 29 C n 1 30 G n 1 31 A n 1 32 C n 1 33 G n 1 34 U n 1 35 G n 1 36 C n 1 37 C n 1 38 A n 1 39 U n 1 40 C n 1 41 G n 1 42 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 42 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 I7U non-polymer . '3-methyl-7~{H}-purine-2,6-dione' '3-Methylxanthine; 1076-22-8' 'C6 H6 N4 O2' 166.137 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 -4 ? ? ? A . n A 1 2 C 2 -3 -3 C C A . n A 1 3 G 3 -2 -2 G G A . n A 1 4 A 4 -1 -1 A A A . n A 1 5 U 5 0 0 U U A . n A 1 6 G 6 1 1 G G A . n A 1 7 G 7 2 2 G G A . n A 1 8 C 8 3 3 C C A . n A 1 9 A 9 4 4 A A A . n A 1 10 C 10 5 5 C C A . n A 1 11 G 11 6 6 G G A . n A 1 12 U 12 7 7 U U A . n A 1 13 G 13 8 8 G G A . n A 1 14 U 14 9 9 U U A . n A 1 15 A 15 10 10 A A A . n A 1 16 U 16 11 11 U U A . n A 1 17 U 17 12 12 U U A . n A 1 18 A 18 13 13 A A A . n A 1 19 C 19 14 14 C C A . n A 1 20 C 20 15 15 C C A . n A 1 21 C 21 16 16 C C A . n A 1 22 U 22 17 17 U U A . n A 1 23 A 23 18 18 A A A . n A 1 24 G 24 19 19 G G A . n A 1 25 U 25 20 20 U U A . n A 1 26 G 26 21 21 G G A . n A 1 27 G 27 22 22 G G A . n A 1 28 U 28 23 23 U U A . n A 1 29 C 29 24 24 C C A . n A 1 30 G 30 25 25 G G A . n A 1 31 A 31 26 26 A A A . n A 1 32 C 32 27 27 C C A . n A 1 33 G 33 28 28 G G A . n A 1 34 U 34 29 29 U U A . n A 1 35 G 35 30 30 G G A . n A 1 36 C 36 31 31 C C A . n A 1 37 C 37 32 32 C C A . n A 1 38 A 38 33 33 A A A . n A 1 39 U 39 34 34 U U A . n A 1 40 C 40 35 35 C C A . n A 1 41 G 41 36 36 G G A . n A 1 42 C 42 37 37 C C A . n B 1 1 G 1 -4 ? ? ? B . n B 1 2 C 2 -3 -3 C C B . n B 1 3 G 3 -2 -2 G G B . n B 1 4 A 4 -1 -1 A A B . n B 1 5 U 5 0 0 U U B . n B 1 6 G 6 1 1 G G B . n B 1 7 G 7 2 2 G G B . n B 1 8 C 8 3 3 C C B . n B 1 9 A 9 4 4 A A B . n B 1 10 C 10 5 5 C C B . n B 1 11 G 11 6 6 G G B . n B 1 12 U 12 7 7 U U B . n B 1 13 G 13 8 8 G G B . n B 1 14 U 14 9 9 U U B . n B 1 15 A 15 10 10 A A B . n B 1 16 U 16 11 11 U U B . n B 1 17 U 17 12 12 U U B . n B 1 18 A 18 13 13 A A B . n B 1 19 C 19 14 14 C C B . n B 1 20 C 20 15 15 C C B . n B 1 21 C 21 16 16 C C B . n B 1 22 U 22 17 17 U U B . n B 1 23 A 23 18 18 A A B . n B 1 24 G 24 19 19 G G B . n B 1 25 U 25 20 20 U U B . n B 1 26 G 26 21 21 G G B . n B 1 27 G 27 22 22 G G B . n B 1 28 U 28 23 23 U U B . n B 1 29 C 29 24 24 C C B . n B 1 30 G 30 25 25 G G B . n B 1 31 A 31 26 26 A A B . n B 1 32 C 32 27 27 C C B . n B 1 33 G 33 28 28 G G B . n B 1 34 U 34 29 29 U U B . n B 1 35 G 35 30 30 G G B . n B 1 36 C 36 31 31 C C B . n B 1 37 C 37 32 32 C C B . n B 1 38 A 38 33 33 A A B . n B 1 39 U 39 34 34 U U B . n B 1 40 C 40 35 35 C C B . n B 1 41 G 41 36 36 G G B . n B 1 42 C 42 37 37 C C B . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id I7U _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id I7U _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GTP 1 101 -4 GTP GTP A . D 3 I7U 1 102 101 I7U I7U A . E 4 NA 1 103 1 NA NA A . F 2 GTP 1 101 -4 GTP GTP B . G 3 I7U 1 102 101 I7U I7U B . H 5 HOH 1 201 209 HOH HOH A . H 5 HOH 2 202 229 HOH HOH A . H 5 HOH 3 203 133 HOH HOH A . H 5 HOH 4 204 18 HOH HOH A . H 5 HOH 5 205 50 HOH HOH A . H 5 HOH 6 206 110 HOH HOH A . H 5 HOH 7 207 63 HOH HOH A . H 5 HOH 8 208 83 HOH HOH A . H 5 HOH 9 209 42 HOH HOH A . H 5 HOH 10 210 143 HOH HOH A . H 5 HOH 11 211 1 HOH HOH A . H 5 HOH 12 212 7 HOH HOH A . H 5 HOH 13 213 26 HOH HOH A . H 5 HOH 14 214 35 HOH HOH A . H 5 HOH 15 215 13 HOH HOH A . H 5 HOH 16 216 226 HOH HOH A . H 5 HOH 17 217 193 HOH HOH A . H 5 HOH 18 218 3 HOH HOH A . H 5 HOH 19 219 19 HOH HOH A . H 5 HOH 20 220 4 HOH HOH A . H 5 HOH 21 221 112 HOH HOH A . H 5 HOH 22 222 55 HOH HOH A . H 5 HOH 23 223 9 HOH HOH A . H 5 HOH 24 224 118 HOH HOH A . H 5 HOH 25 225 16 HOH HOH A . H 5 HOH 26 226 201 HOH HOH A . H 5 HOH 27 227 17 HOH HOH A . H 5 HOH 28 228 139 HOH HOH A . H 5 HOH 29 229 217 HOH HOH A . H 5 HOH 30 230 154 HOH HOH A . H 5 HOH 31 231 88 HOH HOH A . H 5 HOH 32 232 171 HOH HOH A . H 5 HOH 33 233 85 HOH HOH A . H 5 HOH 34 234 177 HOH HOH A . I 5 HOH 1 201 227 HOH HOH B . I 5 HOH 2 202 10 HOH HOH B . I 5 HOH 3 203 231 HOH HOH B . I 5 HOH 4 204 206 HOH HOH B . I 5 HOH 5 205 21 HOH HOH B . I 5 HOH 6 206 57 HOH HOH B . I 5 HOH 7 207 68 HOH HOH B . I 5 HOH 8 208 129 HOH HOH B . I 5 HOH 9 209 74 HOH HOH B . I 5 HOH 10 210 205 HOH HOH B . I 5 HOH 11 211 127 HOH HOH B . I 5 HOH 12 212 11 HOH HOH B . I 5 HOH 13 213 84 HOH HOH B . I 5 HOH 14 214 163 HOH HOH B . I 5 HOH 15 215 179 HOH HOH B . I 5 HOH 16 216 32 HOH HOH B . I 5 HOH 17 217 198 HOH HOH B . I 5 HOH 18 218 149 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1-4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9M6D _cell.details ? _cell.formula_units_Z ? _cell.length_a 208.370 _cell.length_a_esd ? _cell.length_b 22.600 _cell.length_b_esd ? _cell.length_c 44.960 _cell.length_c_esd ? _cell.volume 211723.924 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9M6D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9M6D _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.96 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 37.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.08 M Potassium chloride 0.02 M Magnesium chloride hexahydrate 50% v/v (+/-)-2-Methyl-2,4-pentanediol 0.012 M Spermine tetrahydrochloride ; _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 291 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER2 S 9M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-12-09 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97895 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL02U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97895 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL02U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate 47.71 _reflns.entry_id 9M6D _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.18 _reflns.d_resolution_low 34.73 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 11974 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.9 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.065 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.993 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.154 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.18 _reflns_shell.d_res_low 2.24 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 878 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.561 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.680 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 1.251 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 58.64 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9M6D _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.18 _refine.ls_d_res_low 30.56 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 11873 _refine.ls_number_reflns_R_free 599 _refine.ls_number_reflns_R_work 11274 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.56 _refine.ls_percent_reflns_R_free 5.05 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2468 _refine.ls_R_factor_R_free 0.2788 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2451 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.correlation_coeff_I_to_Fcsqd_work ? _refine.correlation_coeff_I_to_Fcsqd_free ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 33.6604 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.3033 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.18 _refine_hist.d_res_low 30.56 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 1881 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1740 _refine_hist.pdbx_number_atoms_ligand 89 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0046 ? 2034 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.0967 ? 3164 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0433 ? 418 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0054 ? 86 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 26.1011 ? 1246 ? f_dihedral_angle_d ? ? # _refine_ls_restr_ncs.pdbx_ordinal 1 _refine_ls_restr_ncs.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_restr_ncs.dom_id d_2 _refine_ls_restr_ncs.pdbx_ens_id ens_1 _refine_ls_restr_ncs.rms_dev_position 0.726050151458 _refine_ls_restr_ncs.weight_position ? _refine_ls_restr_ncs.rms_dev_B_iso ? _refine_ls_restr_ncs.weight_B_iso ? _refine_ls_restr_ncs.pdbx_type 'Torsion NCS' _refine_ls_restr_ncs.pdbx_asym_id C _refine_ls_restr_ncs.pdbx_auth_asym_id A _refine_ls_restr_ncs.pdbx_number ? _refine_ls_restr_ncs.pdbx_rms ? _refine_ls_restr_ncs.pdbx_weight ? _refine_ls_restr_ncs.ncs_model_details ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.correlation_coeff_Fo_to_Fc _refine_ls_shell.correlation_coeff_Fo_to_Fc_free _refine_ls_shell.correlation_coeff_I_to_Fcsqd_work _refine_ls_shell.correlation_coeff_I_to_Fcsqd_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.18 2.40 . . 155 2745 100.00 . . . . 0.3142 . . . . . . . . . . . . . . . 0.3403 'X-RAY DIFFRACTION' 2.40 2.75 . . 143 2765 99.97 . . . . 0.3332 . . . . . . . . . . . . . . . 0.3827 'X-RAY DIFFRACTION' 2.75 3.46 . . 130 2792 98.65 . . . . 0.2728 . . . . . . . . . . . . . . . 0.3016 'X-RAY DIFFRACTION' 3.46 30.56 . . 171 2972 99.65 . . . . 0.2049 . . . . . . . . . . . . . . . 0.2431 # _struct_ncs_oper.id 1 _struct_ncs_oper.code given _struct_ncs_oper.matrix[1][1] 0.992877908965 _struct_ncs_oper.matrix[1][2] -0.00478083496625 _struct_ncs_oper.matrix[1][3] 0.119040335627 _struct_ncs_oper.matrix[2][1] -0.00240912518642 _struct_ncs_oper.matrix[2][2] -0.999795885063 _struct_ncs_oper.matrix[2][3] -0.0200595196269 _struct_ncs_oper.matrix[3][1] 0.119111938969 _struct_ncs_oper.matrix[3][2] 0.0196298708312 _struct_ncs_oper.matrix[3][3] -0.992686765383 _struct_ncs_oper.vector[1] -7.92837306481 _struct_ncs_oper.vector[2] -0.117638199097 _struct_ncs_oper.vector[3] -22.6618940362 _struct_ncs_oper.details ? # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details ens_1 d_1 ;(chain "A" and ((resid -4 and (name C1" or name C2 or name C2" or name C3" or name C4 or name C4" or name C5 or name C5" or name C6 or name C8 or name N1 or name N2 or name N3 or name N7 or name N9 or name O1A or name O1B or name O1G or name O2" or name O2A or name O2B or name O2G or name O3" or name O3A or name O3B or name O3G or name O4" or name O5" or name O6 or name PA or name PB or name PG )) or (resid -3 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid -2 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid -1 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 0 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 1 through 2 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 3 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 4 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 5 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 6 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 7 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 8 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 9 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 10 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 11 through 12 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 13 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 14 through 16 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 17 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 18 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 19 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 20 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 21 through 22 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 23 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 24 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 25 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 26 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 27 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 28 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 29 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 30 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 31 through 32 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 33 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 34 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 35 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 36 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 37 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 101 and (name C01 or name C03 or name C04 or name C05 or name C08 or name C11 or name N02 or name N07 or name N10 or name N12 or name O06 or name O09)))) ; ens_1 d_2 ;(chain "B" and ((resid -4 and (name C1" or name C2 or name C2" or name C3" or name C4 or name C4" or name C5 or name C5" or name C6 or name C8 or name N1 or name N2 or name N3 or name N7 or name N9 or name O1A or name O1B or name O1G or name O2" or name O2A or name O2B or name O2G or name O3" or name O3A or name O3B or name O3G or name O4" or name O5" or name O6 or name PA or name PB or name PG )) or (resid -3 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid -2 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid -1 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 0 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 1 through 2 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 3 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 4 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 5 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 6 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 7 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 8 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 9 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 10 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 11 through 12 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 13 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 14 through 16 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 17 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 18 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 19 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 20 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 21 through 22 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 23 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 24 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 25 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 26 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 27 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 28 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 29 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 30 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 31 through 32 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 33 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name N6 or name N1 or name C2 or name N3 or name C4 )) or (resid 34 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name O4 or name C5 or name C6 )) or (resid 35 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 36 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N9 or name C8 or name N7 or name C5 or name C6 or name O6 or name N1 or name C2 or name N2 or name N3 or name C4 )) or (resid 37 and (name P or name OP1 or name OP2 or name O5" or name C5" or name C4" or name O4" or name C3" or name O3" or name C2" or name O2" or name C1" or name N1 or name C2 or name O2 or name N3 or name C4 or name N4 or name C5 or name C6 )) or (resid 101 and (name C01 or name C03 or name C04 or name C05 or name C08 or name C11 or name N02 or name N07 or name N10 or name N12 or name O06 or name O09)))) ; # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.selection_details ens_1 d_1 1 C GTP . . C GTP . . A GTP 101 A GTP 101 ? ? ens_1 d_1 2 A C 2 . A C 2 . A C -3 A C -3 ? ? ens_1 d_1 3 D I7U . . D I7U . . A I7U 102 A I7U 102 ? ? ens_1 d_2 1 F GTP . . F GTP . . B GTP 101 B GTP 101 ? ? ens_1 d_2 2 B C 2 . B C 2 . B C -3 B C -3 ? ? ens_1 d_2 3 G I7U . . G I7U . . B I7U 102 B I7U 102 ? ? # _struct_ncs_ens.id ens_1 _struct_ncs_ens.details ? # _struct_ncs_ens_gen.ens_id ens_1 _struct_ncs_ens_gen.dom_id_1 d_2 _struct_ncs_ens_gen.dom_id_2 d_1 _struct_ncs_ens_gen.oper_id 1 # _struct.entry_id 9M6D _struct.title 'Crystal structure of xanthine/guanine RNA aptamer (P1-12bp) with 3-methylxanthine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9M6D _struct_keywords.text '3-methylxanthine, xanthine/guanine RNA aptamer, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 2 ? G N N 3 ? H N N 5 ? I N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9M6D _struct_ref.pdbx_db_accession 9M6D _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 9M6D A 1 ? 42 ? 9M6D -4 ? 37 ? -4 37 2 1 9M6D B 1 ? 42 ? 9M6D -4 ? 37 ? -4 37 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,H 1 2 B,F,G,I # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x+1/2,-y,z+1/2 -1.0000000000 0.0000000000 0.0000000000 104.1850000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 22.4800000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A C 2 P ? ? ? 1_555 C GTP . "O3'" ? ? A C -3 A GTP 101 1_555 ? ? ? ? ? ? ? 1.590 ? ? covale2 covale both ? B C 2 P ? ? ? 1_555 F GTP . "O3'" ? ? B C -3 B GTP 101 1_555 ? ? ? ? ? ? ? 1.560 ? ? metalc1 metalc ? ? C GTP . O2G ? ? ? 1_555 E NA . NA ? ? A GTP 101 A NA 103 1_555 ? ? ? ? ? ? ? 2.818 ? ? metalc2 metalc ? ? C GTP . O1B ? ? ? 1_555 E NA . NA ? ? A GTP 101 A NA 103 1_555 ? ? ? ? ? ? ? 2.107 ? ? metalc3 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 103 A HOH 208 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc4 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 103 A HOH 213 1_555 ? ? ? ? ? ? ? 3.089 ? ? metalc5 metalc ? ? E NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 103 A HOH 231 1_555 ? ? ? ? ? ? ? 2.325 ? ? hydrog1 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 41 N1 ? ? A C -3 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 41 O6 ? ? A C -3 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 41 N2 ? ? A C -3 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 40 N3 ? ? A G -2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 40 O2 ? ? A G -2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 40 N4 ? ? A G -2 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 39 N3 ? ? A A -1 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 39 O4 ? ? A A -1 A U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 38 N1 ? ? A U 0 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 38 N6 ? ? A U 0 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 1 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 2 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 A G 35 N1 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 A G 35 O6 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 A G 35 N2 ? ? A C 3 A G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N1 ? ? ? 1_555 A U 34 N3 ? ? A A 4 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A A 9 N6 ? ? ? 1_555 A U 34 O4 ? ? A A 4 A U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 5 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 6 A C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 7 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 7 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 13 N1 ? ? ? 1_555 A G 30 O6 ? ? A G 8 A G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog31 hydrog ? ? A G 13 O6 ? ? ? 1_555 A G 30 N1 ? ? A G 8 A G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog32 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 18 N7 ? ? A U 11 A A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog33 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 18 N6 ? ? A U 11 A A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog34 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 28 N3 ? ? A A 13 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 28 O4 ? ? A A 13 A U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 14 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 26 N1 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 26 O6 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 26 N2 ? ? A C 15 A G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 16 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? B C 2 N3 ? ? ? 1_555 B G 41 N1 ? ? B C -3 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? B C 2 N4 ? ? ? 1_555 B G 41 O6 ? ? B C -3 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? B C 2 O2 ? ? ? 1_555 B G 41 N2 ? ? B C -3 B G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? B G 3 N1 ? ? ? 1_555 B C 40 N3 ? ? B G -2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? B G 3 N2 ? ? ? 1_555 B C 40 O2 ? ? B G -2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? B G 3 O6 ? ? ? 1_555 B C 40 N4 ? ? B G -2 B C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? B A 4 N1 ? ? ? 1_555 B U 39 N3 ? ? B A -1 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? B A 4 N6 ? ? ? 1_555 B U 39 O4 ? ? B A -1 B U 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 38 N1 ? ? B U 0 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 38 N6 ? ? B U 0 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? B G 6 N1 ? ? ? 1_555 B C 37 N3 ? ? B G 1 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 37 O2 ? ? B G 1 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? B G 6 O6 ? ? ? 1_555 B C 37 N4 ? ? B G 1 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? B G 7 N1 ? ? ? 1_555 B C 36 N3 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? B G 7 N2 ? ? ? 1_555 B C 36 O2 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? B G 7 O6 ? ? ? 1_555 B C 36 N4 ? ? B G 2 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? B C 8 N3 ? ? ? 1_555 B G 35 N1 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? B C 8 N4 ? ? ? 1_555 B G 35 O6 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? B C 8 O2 ? ? ? 1_555 B G 35 N2 ? ? B C 3 B G 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? B A 9 N1 ? ? ? 1_555 B U 34 N3 ? ? B A 4 B U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? B A 9 N6 ? ? ? 1_555 B U 34 O4 ? ? B A 4 B U 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? B C 10 N3 ? ? ? 1_555 B G 33 N1 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? B C 10 N4 ? ? ? 1_555 B G 33 O6 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? B C 10 O2 ? ? ? 1_555 B G 33 N2 ? ? B C 5 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 6 B C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? B U 12 N3 ? ? ? 1_555 B A 31 N1 ? ? B U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? B U 12 O4 ? ? ? 1_555 B A 31 N6 ? ? B U 7 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? B G 13 N1 ? ? ? 1_555 B G 30 O6 ? ? B G 8 B G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog75 hydrog ? ? B G 13 O6 ? ? ? 1_555 B G 30 N1 ? ? B G 8 B G 25 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog76 hydrog ? ? B U 16 N3 ? ? ? 1_555 B A 18 N7 ? ? B U 11 B A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog77 hydrog ? ? B U 16 O4 ? ? ? 1_555 B A 18 N6 ? ? B U 11 B A 13 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog78 hydrog ? ? B A 18 N1 ? ? ? 1_555 B U 28 N3 ? ? B A 13 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B A 18 N6 ? ? ? 1_555 B U 28 O4 ? ? B A 13 B U 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 19 N3 ? ? ? 1_555 B G 27 N1 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B C 19 N4 ? ? ? 1_555 B G 27 O6 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? B C 19 O2 ? ? ? 1_555 B G 27 N2 ? ? B C 14 B G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? B C 20 N3 ? ? ? 1_555 B G 26 N1 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B C 20 N4 ? ? ? 1_555 B G 26 O6 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B C 20 O2 ? ? ? 1_555 B G 26 N2 ? ? B C 15 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B C 21 N3 ? ? ? 1_555 B G 24 N1 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 21 N4 ? ? ? 1_555 B G 24 O6 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 21 O2 ? ? ? 1_555 B G 24 N2 ? ? B C 16 B G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O2G ? C GTP . ? A GTP 101 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O1B ? C GTP . ? A GTP 101 ? 1_555 64.6 ? 2 O2G ? C GTP . ? A GTP 101 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? H HOH . ? A HOH 208 ? 1_555 76.8 ? 3 O1B ? C GTP . ? A GTP 101 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? H HOH . ? A HOH 208 ? 1_555 74.4 ? 4 O2G ? C GTP . ? A GTP 101 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? H HOH . ? A HOH 213 ? 1_555 171.8 ? 5 O1B ? C GTP . ? A GTP 101 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? H HOH . ? A HOH 213 ? 1_555 109.2 ? 6 O ? H HOH . ? A HOH 208 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? H HOH . ? A HOH 213 ? 1_555 107.3 ? 7 O2G ? C GTP . ? A GTP 101 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? H HOH . ? A HOH 231 ? 1_555 78.3 ? 8 O1B ? C GTP . ? A GTP 101 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? H HOH . ? A HOH 231 ? 1_555 104.2 ? 9 O ? H HOH . ? A HOH 208 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? H HOH . ? A HOH 231 ? 1_555 152.8 ? 10 O ? H HOH . ? A HOH 213 ? 1_555 NA ? E NA . ? A NA 103 ? 1_555 O ? H HOH . ? A HOH 231 ? 1_555 98.8 ? # _pdbx_entry_details.entry_id 9M6D _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B HOH 217 ? ? O B HOH 218 ? ? 1.97 2 1 O6 A G 1 ? ? O A HOH 201 ? ? 2.11 3 1 O1A A GTP 101 ? ? O A HOH 202 ? ? 2.11 4 1 O2B A GTP 101 ? ? O A HOH 203 ? ? 2.12 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 B C 37 ? ? N3 B C 37 ? ? C4 B C 37 ? ? 124.23 119.90 4.33 0.50 N 2 1 N3 B C 37 ? ? C4 B C 37 ? ? C5 B C 37 ? ? 118.58 121.90 -3.32 0.40 N 3 1 N1 B C 37 ? ? C2 B C 37 ? ? O2 B C 37 ? ? 114.96 118.90 -3.94 0.60 N 4 1 N3 B C 37 ? ? C2 B C 37 ? ? O2 B C 37 ? ? 127.84 121.90 5.94 0.70 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 31.870013677 3.70498881557 1.58436670041 0.431625198805 ? 0.002926873111 ? 0.019500020688 ? 0.46014820345 ? -0.025785371334 ? 0.3856668013 ? 0.97335803443 ? -0.551942720689 ? 1.16728645187 ? -0.00792241991114 ? -0.272030429715 ? 0.365413356794 ? 0.0762715197889 ? 0.0420902020085 ? -0.0731548681096 ? 0.125505017468 ? -0.161991223091 ? 0.322220814449 ? 0.00845362678683 ? 0.315515001819 ? 0.146356406487 ? 2 'X-RAY DIFFRACTION' ? refined 14.3756830611 6.31036928557 3.53479301134 0.406722929904 ? -0.0395834218758 ? 0.00052229208098 ? 0.394982495548 ? 0.0475428911139 ? 0.562063863228 ? 3.98181081139 ? 0.0465916417704 ? -0.016155087517 ? 2.2308749805 ? -0.734516935279 ? 4.037697108 ? -0.0549349149054 ? -0.475927115219 ? -0.374080069238 ? -0.198542330581 ? 0.13402496892 ? -0.419880790659 ? 0.144484130451 ? 0.0901560901288 ? 0.0183701711142 ? 3 'X-RAY DIFFRACTION' ? refined 43.9482307978 4.7982835288 4.47387755038 0.370597232205 ? -0.0362806982633 ? 0.0380813747845 ? 0.302471563849 ? 0.0371350176118 ? 0.331718015265 ? 2.28358973341 ? -1.55794083095 ? 1.9301645871 ? 1.14215989649 ? -0.889442737372 ? 2.54858340386 ? -0.0300399660963 ? 0.140794856455 ? -0.398888077521 ? 0.240774300352 ? 0.0296106429879 ? 0.267183733513 ? -0.246484238501 ? 0.219459909148 ? 0.0605727119194 ? 4 'X-RAY DIFFRACTION' ? refined 23.8569649043 -3.87959750697 -20.2712913571 0.414853830288 ? -0.0984247356167 ? 0.0448914662079 ? 0.61390525246 ? -0.230899420624 ? 0.434455392889 ? 6.99030541257 ? 0.310969971578 ? -1.65680829027 ? 0.714526124592 ? -0.771104544341 ? 1.00262047802 ? -0.690486118453 ? -0.925405266646 ? -0.0513781551884 ? -0.199142843326 ? 0.409448750189 ? -0.0749009388608 ? 0.141826369214 ? 0.273899745313 ? 0.251210764013 ? 5 'X-RAY DIFFRACTION' ? refined 4.36896732279 -2.57800420809 -28.6736412574 0.517287141995 ? -0.227921427465 ? -0.0164306872535 ? 1.04172425104 ? -0.155996322902 ? 0.578936403646 ? 7.73227004552 ? 0.526705762987 ? -4.41858120131 ? 0.795909659134 ? 0.430372800937 ? 9.60708468075 ? 0.203825424472 ? 0.0928323713407 ? 1.39666355819 ? -0.209500753265 ? 0.366982557099 ? 0.485440156699 ? -1.88220154809 ? -1.466665922 ? -0.216980384689 ? 6 'X-RAY DIFFRACTION' ? refined 22.5216255079 -6.75759428428 -22.1016420983 0.418761806696 ? -0.0149023337418 ? 0.0352659263353 ? 0.465534215431 ? -0.0944382878959 ? 0.570892701665 ? 3.8316434549 ? 1.86457033691 ? -0.996311573603 ? -0.407517516189 ? -0.600763922619 ? 0.326056407241 ? -0.444402596205 ? -0.308236809479 ? -0.0462002133454 ? -0.146099471375 ? 0.113949092112 ? 0.205198516196 ? 0.0554852163633 ? -0.134640366712 ? 0.263506246382 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 B ? A -3 ? B ? A 11 ? ? ;chain 'A' and (resid -3 through 11 ) ; 2 'X-RAY DIFFRACTION' 2 B ? A 12 ? B ? A 26 ? ? ;chain 'A' and (resid 12 through 26 ) ; 3 'X-RAY DIFFRACTION' 3 B ? A 27 ? B ? A 37 ? ? ;chain 'A' and (resid 27 through 37 ) ; 4 'X-RAY DIFFRACTION' 4 E ? B -3 ? E ? B 11 ? ? ;chain 'B' and (resid -3 through 11 ) ; 5 'X-RAY DIFFRACTION' 5 E ? B 12 ? E ? B 16 ? ? ;chain 'B' and (resid 12 through 16 ) ; 6 'X-RAY DIFFRACTION' 6 E ? B 17 ? E ? B 37 ? ? ;chain 'B' and (resid 17 through 37 ) ; # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A G -4 ? A G 1 2 1 Y 1 B G -4 ? B G 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GTP PG P N N 111 GTP O1G O N N 112 GTP O2G O N N 113 GTP O3G O N N 114 GTP O3B O N N 115 GTP PB P N N 116 GTP O1B O N N 117 GTP O2B O N N 118 GTP O3A O N N 119 GTP PA P N N 120 GTP O1A O N N 121 GTP O2A O N N 122 GTP "O5'" O N N 123 GTP "C5'" C N N 124 GTP "C4'" C N R 125 GTP "O4'" O N N 126 GTP "C3'" C N S 127 GTP "O3'" O N N 128 GTP "C2'" C N R 129 GTP "O2'" O N N 130 GTP "C1'" C N R 131 GTP N9 N Y N 132 GTP C8 C Y N 133 GTP N7 N Y N 134 GTP C5 C Y N 135 GTP C6 C N N 136 GTP O6 O N N 137 GTP N1 N N N 138 GTP C2 C N N 139 GTP N2 N N N 140 GTP N3 N N N 141 GTP C4 C Y N 142 GTP HOG2 H N N 143 GTP HOG3 H N N 144 GTP HOB2 H N N 145 GTP HOA2 H N N 146 GTP "H5'" H N N 147 GTP "H5''" H N N 148 GTP "H4'" H N N 149 GTP "H3'" H N N 150 GTP "HO3'" H N N 151 GTP "H2'" H N N 152 GTP "HO2'" H N N 153 GTP "H1'" H N N 154 GTP H8 H N N 155 GTP HN1 H N N 156 GTP HN21 H N N 157 GTP HN22 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 I7U C11 C Y N 162 I7U C01 C N N 163 I7U C03 C Y N 164 I7U C04 C Y N 165 I7U C05 C N N 166 I7U C08 C N N 167 I7U N02 N N N 168 I7U N07 N N N 169 I7U N10 N Y N 170 I7U N12 N Y N 171 I7U O06 O N N 172 I7U O09 O N N 173 I7U H111 H N N 174 I7U H013 H N N 175 I7U H012 H N N 176 I7U H011 H N N 177 I7U H071 H N N 178 I7U H101 H N N 179 NA NA NA N N 180 U OP3 O N N 181 U P P N N 182 U OP1 O N N 183 U OP2 O N N 184 U "O5'" O N N 185 U "C5'" C N N 186 U "C4'" C N R 187 U "O4'" O N N 188 U "C3'" C N S 189 U "O3'" O N N 190 U "C2'" C N R 191 U "O2'" O N N 192 U "C1'" C N R 193 U N1 N N N 194 U C2 C N N 195 U O2 O N N 196 U N3 N N N 197 U C4 C N N 198 U O4 O N N 199 U C5 C N N 200 U C6 C N N 201 U HOP3 H N N 202 U HOP2 H N N 203 U "H5'" H N N 204 U "H5''" H N N 205 U "H4'" H N N 206 U "H3'" H N N 207 U "HO3'" H N N 208 U "H2'" H N N 209 U "HO2'" H N N 210 U "H1'" H N N 211 U H3 H N N 212 U H5 H N N 213 U H6 H N N 214 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GTP PG O1G doub N N 116 GTP PG O2G sing N N 117 GTP PG O3G sing N N 118 GTP PG O3B sing N N 119 GTP O2G HOG2 sing N N 120 GTP O3G HOG3 sing N N 121 GTP O3B PB sing N N 122 GTP PB O1B doub N N 123 GTP PB O2B sing N N 124 GTP PB O3A sing N N 125 GTP O2B HOB2 sing N N 126 GTP O3A PA sing N N 127 GTP PA O1A doub N N 128 GTP PA O2A sing N N 129 GTP PA "O5'" sing N N 130 GTP O2A HOA2 sing N N 131 GTP "O5'" "C5'" sing N N 132 GTP "C5'" "C4'" sing N N 133 GTP "C5'" "H5'" sing N N 134 GTP "C5'" "H5''" sing N N 135 GTP "C4'" "O4'" sing N N 136 GTP "C4'" "C3'" sing N N 137 GTP "C4'" "H4'" sing N N 138 GTP "O4'" "C1'" sing N N 139 GTP "C3'" "O3'" sing N N 140 GTP "C3'" "C2'" sing N N 141 GTP "C3'" "H3'" sing N N 142 GTP "O3'" "HO3'" sing N N 143 GTP "C2'" "O2'" sing N N 144 GTP "C2'" "C1'" sing N N 145 GTP "C2'" "H2'" sing N N 146 GTP "O2'" "HO2'" sing N N 147 GTP "C1'" N9 sing N N 148 GTP "C1'" "H1'" sing N N 149 GTP N9 C8 sing Y N 150 GTP N9 C4 sing Y N 151 GTP C8 N7 doub Y N 152 GTP C8 H8 sing N N 153 GTP N7 C5 sing Y N 154 GTP C5 C6 sing N N 155 GTP C5 C4 doub Y N 156 GTP C6 O6 doub N N 157 GTP C6 N1 sing N N 158 GTP N1 C2 sing N N 159 GTP N1 HN1 sing N N 160 GTP C2 N2 sing N N 161 GTP C2 N3 doub N N 162 GTP N2 HN21 sing N N 163 GTP N2 HN22 sing N N 164 GTP N3 C4 sing N N 165 HOH O H1 sing N N 166 HOH O H2 sing N N 167 I7U C01 N02 sing N N 168 I7U C03 C04 doub Y N 169 I7U C03 N02 sing N N 170 I7U C03 N12 sing Y N 171 I7U C04 C05 sing N N 172 I7U C04 N10 sing Y N 173 I7U C05 N07 sing N N 174 I7U C05 O06 doub N N 175 I7U C08 N02 sing N N 176 I7U C08 N07 sing N N 177 I7U C08 O09 doub N N 178 I7U C11 N10 sing Y N 179 I7U C11 N12 doub Y N 180 I7U C11 H111 sing N N 181 I7U C01 H013 sing N N 182 I7U C01 H012 sing N N 183 I7U C01 H011 sing N N 184 I7U N07 H071 sing N N 185 I7U N10 H101 sing N N 186 U OP3 P sing N N 187 U OP3 HOP3 sing N N 188 U P OP1 doub N N 189 U P OP2 sing N N 190 U P "O5'" sing N N 191 U OP2 HOP2 sing N N 192 U "O5'" "C5'" sing N N 193 U "C5'" "C4'" sing N N 194 U "C5'" "H5'" sing N N 195 U "C5'" "H5''" sing N N 196 U "C4'" "O4'" sing N N 197 U "C4'" "C3'" sing N N 198 U "C4'" "H4'" sing N N 199 U "O4'" "C1'" sing N N 200 U "C3'" "O3'" sing N N 201 U "C3'" "C2'" sing N N 202 U "C3'" "H3'" sing N N 203 U "O3'" "HO3'" sing N N 204 U "C2'" "O2'" sing N N 205 U "C2'" "C1'" sing N N 206 U "C2'" "H2'" sing N N 207 U "O2'" "HO2'" sing N N 208 U "C1'" N1 sing N N 209 U "C1'" "H1'" sing N N 210 U N1 C2 sing N N 211 U N1 C6 sing N N 212 U C2 O2 doub N N 213 U C2 N3 sing N N 214 U N3 C4 sing N N 215 U N3 H3 sing N N 216 U C4 O4 doub N N 217 U C4 C5 sing N N 218 U C5 C6 doub N N 219 U C5 H5 sing N N 220 U C6 H6 sing N N 221 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9M6D 'double helix' 9M6D 'a-form double helix' 9M6D 'hairpin loop' 9M6D 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 2 1_555 A G 41 1_555 0.173 -0.204 0.281 2.568 -9.105 -1.610 1 A_C-3:G36_A A -3 ? A 36 ? 19 1 1 A G 3 1_555 A C 40 1_555 -0.249 -0.180 -0.094 -4.981 -9.685 1.170 2 A_G-2:C35_A A -2 ? A 35 ? 19 1 1 A A 4 1_555 A U 39 1_555 -0.120 -0.120 0.228 1.727 -9.874 -0.306 3 A_A-1:U34_A A -1 ? A 34 ? 20 1 1 A U 5 1_555 A A 38 1_555 0.024 -0.001 0.335 1.592 -9.107 5.265 4 A_U0:A33_A A 0 ? A 33 ? 20 1 1 A G 6 1_555 A C 37 1_555 -0.186 -0.089 0.208 -1.998 -10.646 1.394 5 A_G1:C32_A A 1 ? A 32 ? 19 1 1 A G 7 1_555 A C 36 1_555 -0.135 -0.123 0.052 1.445 -6.411 1.384 6 A_G2:C31_A A 2 ? A 31 ? 19 1 1 A C 8 1_555 A G 35 1_555 0.075 -0.180 0.372 1.449 -6.618 0.738 7 A_C3:G30_A A 3 ? A 30 ? 19 1 1 A A 9 1_555 A U 34 1_555 0.076 -0.157 0.305 1.501 -12.584 0.181 8 A_A4:U29_A A 4 ? A 29 ? 20 1 1 A C 10 1_555 A G 33 1_555 0.269 -0.316 0.230 0.883 -11.198 -1.531 9 A_C5:G28_A A 5 ? A 28 ? 19 1 1 A G 11 1_555 A C 32 1_555 -0.200 -0.028 -0.301 -9.081 -14.065 2.244 10 A_G6:C27_A A 6 ? A 27 ? 19 1 1 A U 12 1_555 A A 31 1_555 0.127 -0.073 -0.052 -2.850 -11.252 -3.495 11 A_U7:A26_A A 7 ? A 26 ? 20 1 1 A G 13 1_555 A G 30 1_555 1.406 1.164 -0.143 -12.044 4.811 -171.465 12 A_G8:G25_A A 8 ? A 25 ? 3 2 1 A A 18 1_555 A U 28 1_555 0.055 -0.175 -0.039 0.523 -6.701 -0.989 13 A_A13:U23_A A 13 ? A 23 ? 20 1 1 A C 19 1_555 A G 27 1_555 0.233 -0.201 -0.250 4.043 -7.873 1.673 14 A_C14:G22_A A 14 ? A 22 ? 19 1 1 A C 20 1_555 A G 26 1_555 0.164 -0.151 0.102 -6.577 -2.789 -0.996 15 A_C15:G21_A A 15 ? A 21 ? 19 1 1 A C 21 1_555 A G 24 1_555 0.174 -0.095 0.257 -1.508 3.794 2.007 16 A_C16:G19_A A 16 ? A 19 ? 19 1 1 B C 2 1_555 B G 41 1_555 0.366 -0.296 -0.073 -0.096 -13.497 0.860 17 B_C-3:G36_B B -3 ? B 36 ? 19 1 1 B G 3 1_555 B C 40 1_555 -0.249 -0.235 0.012 -10.097 -11.688 1.446 18 B_G-2:C35_B B -2 ? B 35 ? 19 1 1 B A 4 1_555 B U 39 1_555 0.011 -0.200 0.251 0.460 -8.151 3.032 19 B_A-1:U34_B B -1 ? B 34 ? 20 1 1 B U 5 1_555 B A 38 1_555 0.079 -0.292 0.027 3.492 -9.328 -2.406 20 B_U0:A33_B B 0 ? B 33 ? 20 1 1 B G 6 1_555 B C 37 1_555 -0.240 -0.203 -0.049 -1.318 -8.612 -0.851 21 B_G1:C32_B B 1 ? B 32 ? 19 1 1 B G 7 1_555 B C 36 1_555 -0.209 -0.196 -0.177 -1.286 -7.178 1.970 22 B_G2:C31_B B 2 ? B 31 ? 19 1 1 B C 8 1_555 B G 35 1_555 0.226 -0.140 0.075 0.844 -6.406 3.805 23 B_C3:G30_B B 3 ? B 30 ? 19 1 1 B A 9 1_555 B U 34 1_555 -0.115 -0.162 0.296 -1.066 -9.025 1.234 24 B_A4:U29_B B 4 ? B 29 ? 20 1 1 B C 10 1_555 B G 33 1_555 0.214 -0.209 0.133 0.515 -10.657 -0.269 25 B_C5:G28_B B 5 ? B 28 ? 19 1 1 B G 11 1_555 B C 32 1_555 -0.246 -0.188 -0.059 -10.209 -15.906 2.031 26 B_G6:C27_B B 6 ? B 27 ? 19 1 1 B U 12 1_555 B A 31 1_555 0.057 -0.134 0.202 -4.484 -11.430 2.494 27 B_U7:A26_B B 7 ? B 26 ? 20 1 1 B G 13 1_555 B G 30 1_555 -1.319 -1.372 -0.162 14.770 -6.275 178.179 28 B_G8:G25_B B 8 ? B 25 ? 3 2 1 B A 18 1_555 B U 28 1_555 0.101 -0.049 -0.002 -1.177 -2.749 0.084 29 B_A13:U23_B B 13 ? B 23 ? 20 1 1 B C 19 1_555 B G 27 1_555 0.235 -0.231 0.198 -1.080 -6.038 1.991 30 B_C14:G22_B B 14 ? B 22 ? 19 1 1 B C 20 1_555 B G 26 1_555 0.200 -0.097 0.337 -4.591 -2.682 1.961 31 B_C15:G21_B B 15 ? B 21 ? 19 1 1 B C 21 1_555 B G 24 1_555 0.168 -0.165 0.050 3.343 1.113 1.642 32 B_C16:G19_B B 16 ? B 19 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 2 1_555 A G 41 1_555 A G 3 1_555 A C 40 1_555 -0.593 -1.648 3.255 -0.864 15.621 29.188 -5.224 0.914 2.137 28.557 1.580 33.036 1 AA_C-3G-2:C35G36_AA A -3 ? A 36 ? A -2 ? A 35 ? 1 A G 3 1_555 A C 40 1_555 A A 4 1_555 A U 39 1_555 -0.062 -1.121 2.978 -3.084 7.521 35.666 -2.697 -0.275 2.690 12.087 4.956 36.552 2 AA_G-2A-1:U34C35_AA A -2 ? A 35 ? A -1 ? A 34 ? 1 A A 4 1_555 A U 39 1_555 A U 5 1_555 A A 38 1_555 0.868 -1.292 3.280 0.385 5.723 30.444 -3.490 -1.554 3.004 10.777 -0.725 30.967 3 AA_A-1U0:A33U34_AA A -1 ? A 34 ? A 0 ? A 33 ? 1 A U 5 1_555 A A 38 1_555 A G 6 1_555 A C 37 1_555 -0.101 -1.555 2.892 0.721 16.447 32.981 -4.214 0.236 1.925 26.979 -1.182 36.759 4 AA_U0G1:C32A33_AA A 0 ? A 33 ? A 1 ? A 32 ? 1 A G 6 1_555 A C 37 1_555 A G 7 1_555 A C 36 1_555 -0.142 -1.577 3.115 -0.423 6.150 28.562 -4.335 0.199 2.724 12.285 0.844 29.206 5 AA_G1G2:C31C32_AA A 1 ? A 32 ? A 2 ? A 31 ? 1 A G 7 1_555 A C 36 1_555 A C 8 1_555 A G 35 1_555 0.117 -1.444 3.260 -2.015 6.768 35.992 -3.184 -0.451 2.939 10.825 3.222 36.656 6 AA_G2C3:G30C31_AA A 2 ? A 31 ? A 3 ? A 30 ? 1 A C 8 1_555 A G 35 1_555 A A 9 1_555 A U 34 1_555 -0.482 -1.604 2.931 0.047 13.176 30.393 -4.601 0.853 2.075 23.778 -0.085 33.065 7 AA_C3A4:U29G30_AA A 3 ? A 30 ? A 4 ? A 29 ? 1 A A 9 1_555 A U 34 1_555 A C 10 1_555 A G 33 1_555 -0.015 -1.345 3.294 -1.316 3.906 33.043 -2.989 -0.189 3.117 6.834 2.302 33.292 8 AA_A4C5:G28U29_AA A 4 ? A 29 ? A 5 ? A 28 ? 1 A C 10 1_555 A G 33 1_555 A G 11 1_555 A C 32 1_555 0.217 -1.869 3.277 4.749 13.509 30.819 -5.145 0.311 2.289 23.871 -8.392 33.910 9 AA_C5G6:C27G28_AA A 5 ? A 28 ? A 6 ? A 27 ? 1 A G 11 1_555 A C 32 1_555 A U 12 1_555 A A 31 1_555 -0.257 -1.016 3.134 0.048 3.056 32.662 -2.295 0.463 3.029 5.420 -0.084 32.801 10 AA_G6U7:A26C27_AA A 6 ? A 27 ? A 7 ? A 26 ? 1 A U 12 1_555 A A 31 1_555 A G 13 1_555 A G 30 1_555 2.974 -0.957 -0.929 -86.940 -152.411 -58.590 0.269 1.607 0.105 77.211 -44.044 -176.045 11 AA_U7G8:G25A26_AA A 7 ? A 26 ? A 8 ? A 25 ? 1 A G 13 1_555 A G 30 1_555 A A 18 1_555 A U 28 1_555 -4.645 5.209 -0.880 -155.555 -23.940 -66.487 -2.827 -1.142 -3.647 12.739 -82.770 -161.125 12 AA_G8A13:U23G25_AA A 8 ? A 25 ? A 13 ? A 23 ? 1 A A 18 1_555 A U 28 1_555 A C 19 1_555 A G 27 1_555 0.369 -1.490 3.198 0.656 1.638 33.207 -2.868 -0.539 3.130 2.863 -1.146 33.253 13 AA_A13C14:G22U23_AA A 13 ? A 23 ? A 14 ? A 22 ? 1 A C 19 1_555 A G 27 1_555 A C 20 1_555 A G 26 1_555 -0.448 -1.941 3.466 -0.982 10.222 33.454 -4.741 0.601 2.782 17.259 1.658 34.952 14 AA_C14C15:G21G22_AA A 14 ? A 22 ? A 15 ? A 21 ? 1 A C 20 1_555 A G 26 1_555 A C 21 1_555 A G 24 1_555 -0.460 -1.833 3.206 -0.423 -0.584 17.789 -5.582 1.241 3.274 -1.889 1.368 17.804 15 AA_C15C16:G19G21_AA A 15 ? A 21 ? A 16 ? A 19 ? 1 B C 2 1_555 B G 41 1_555 B G 3 1_555 B C 40 1_555 0.145 -1.790 3.349 -0.566 15.987 29.772 -5.410 -0.332 2.135 28.660 1.014 33.711 16 BB_C-3G-2:C35G36_BB B -3 ? B 36 ? B -2 ? B 35 ? 1 B G 3 1_555 B C 40 1_555 B A 4 1_555 B U 39 1_555 -0.277 -0.858 2.881 -3.500 7.574 35.431 -2.281 0.025 2.661 12.236 5.655 36.370 17 BB_G-2A-1:U34C35_BB B -2 ? B 35 ? B -1 ? B 34 ? 1 B A 4 1_555 B U 39 1_555 B U 5 1_555 B A 38 1_555 -0.172 -1.192 3.214 0.880 8.503 29.158 -3.869 0.494 2.758 16.449 -1.702 30.360 18 BB_A-1U0:A33U34_BB B -1 ? B 34 ? B 0 ? B 33 ? 1 B U 5 1_555 B A 38 1_555 B G 6 1_555 B C 37 1_555 0.182 -1.636 3.205 0.080 14.669 32.296 -4.589 -0.289 2.273 24.836 -0.135 35.390 19 BB_U0G1:C32A33_BB B 0 ? B 33 ? B 1 ? B 32 ? 1 B G 6 1_555 B C 37 1_555 B G 7 1_555 B C 36 1_555 -0.023 -1.510 3.276 -0.131 6.185 29.331 -4.141 0.020 2.904 12.046 0.255 29.962 20 BB_G1G2:C31C32_BB B 1 ? B 32 ? B 2 ? B 31 ? 1 B G 7 1_555 B C 36 1_555 B C 8 1_555 B G 35 1_555 0.556 -1.283 3.176 -0.520 6.340 35.696 -2.897 -0.962 2.905 10.242 0.840 36.240 21 BB_G2C3:G30C31_BB B 2 ? B 31 ? B 3 ? B 30 ? 1 B C 8 1_555 B G 35 1_555 B A 9 1_555 B U 34 1_555 -0.312 -1.466 3.033 -1.498 14.487 30.142 -4.552 0.336 2.136 26.032 2.691 33.403 22 BB_C3A4:U29G30_BB B 3 ? B 30 ? B 4 ? B 29 ? 1 B A 9 1_555 B U 34 1_555 B C 10 1_555 B G 33 1_555 0.137 -1.382 3.150 -0.602 7.200 34.952 -3.217 -0.303 2.816 11.832 0.989 35.668 23 BB_A4C5:G28U29_BB B 4 ? B 29 ? B 5 ? B 28 ? 1 B C 10 1_555 B G 33 1_555 B G 11 1_555 B C 32 1_555 0.216 -1.823 3.292 3.470 16.169 30.572 -5.247 0.108 2.104 28.222 -6.057 34.664 24 BB_C5G6:C27G28_BB B 5 ? B 28 ? B 6 ? B 27 ? 1 B G 11 1_555 B C 32 1_555 B U 12 1_555 B A 31 1_555 0.106 -1.121 3.184 -1.220 6.390 30.063 -3.289 -0.425 2.884 12.141 2.318 30.743 25 BB_G6U7:A26C27_BB B 6 ? B 27 ? B 7 ? B 26 ? 1 B U 12 1_555 B A 31 1_555 B G 13 1_555 B G 30 1_555 -0.854 -3.043 -0.681 -154.302 85.231 119.932 -1.416 0.619 -0.952 42.736 77.370 178.137 26 BB_U7G8:G25A26_BB B 7 ? B 26 ? B 8 ? B 25 ? 1 B G 13 1_555 B G 30 1_555 B A 18 1_555 B U 28 1_555 -5.421 -3.691 -1.895 27.399 -158.161 83.583 -2.115 2.688 0.735 -82.248 -14.248 165.505 27 BB_G8A13:U23G25_BB B 8 ? B 25 ? B 13 ? B 23 ? 1 B A 18 1_555 B U 28 1_555 B C 19 1_555 B G 27 1_555 0.218 -1.694 3.238 -1.298 2.597 32.405 -3.463 -0.610 3.086 4.642 2.320 32.531 28 BB_A13C14:G22U23_BB B 13 ? B 23 ? B 14 ? B 22 ? 1 B C 19 1_555 B G 27 1_555 B C 20 1_555 B G 26 1_555 -0.166 -1.890 3.205 0.312 7.497 33.344 -4.307 0.327 2.726 12.864 -0.535 34.154 29 BB_C14C15:G21G22_BB B 14 ? B 22 ? B 15 ? B 21 ? 1 B C 20 1_555 B G 26 1_555 B C 21 1_555 B G 24 1_555 -0.902 -1.745 3.082 1.686 -0.316 16.362 -5.896 4.239 3.007 -1.108 -5.904 16.451 30 BB_C15C16:G19G21_BB B 15 ? B 21 ? B 16 ? B 19 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 32171191 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 9M69 _pdbx_initial_refinement_model.details 'XBA12-XAN structure' # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9M6D _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.004799 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.044248 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022242 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? NA ? ? 9.38062 1.54875 ? ? 3.38349 72.32734 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O1- ? ? 5.12366 3.84317 ? ? 3.49406 27.47979 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #